RNA–Protein interactions for RNA: ENST00000556432.1

ACTN1-219, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 558 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-219ENST00000556432 TRIM75PA6NK02 468 aa17.46■□□□□ 0.39
ACTN1-219ENST00000556432 SLC5A1P13866 664 aa17.46■□□□□ 0.39
ACTN1-219ENST00000556432 IRF5Q13568 498 aa17.46■□□□□ 0.39
ACTN1-219ENST00000556432 ZSCAN29Q8IWY8 852 aaPredicted RBP17.46■□□□□ 0.39
ACTN1-219ENST00000556432 PAK6Q9NQU5 681 aaPredicted RBP17.46■□□□□ 0.39
ACTN1-219ENST00000556432 FAM198AQ9UFP1 575 aa17.46■□□□□ 0.39
ACTN1-219ENST00000556432 LRRFIP2Q9Y608 721 aaKnown RBP17.46■□□□□ 0.39
ACTN1-219ENST00000556432 KIF16BQ96L93 1317 aa17.46■□□□□ 0.38
ACTN1-219ENST00000556432 LDHBP07195 334 aaKnown RBP17.45■□□□□ 0.38
ACTN1-219ENST00000556432 PTPRAP18433 802 aa17.45■□□□□ 0.38
ACTN1-219ENST00000556432 PRDX5P30044 214 aa17.45■□□□□ 0.38
ACTN1-219ENST00000556432 CCDC184Q52MB2 194 aa17.45■□□□□ 0.38
ACTN1-219ENST00000556432 Q7L0L9 218 aa17.45■□□□□ 0.38
ACTN1-219ENST00000556432 WDR63Q8IWG1 891 aa17.45■□□□□ 0.38
ACTN1-219ENST00000556432 ANKRD13CQ8N6S4 541 aa17.45■□□□□ 0.38
ACTN1-219ENST00000556432 ANKRD44Q8N8A2 993 aa17.45■□□□□ 0.38
ACTN1-219ENST00000556432 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.45■□□□□ 0.38
ACTN1-219ENST00000556432 RABL6Q3YEC7 729 aaPredicted RBP17.44■□□□□ 0.38
ACTN1-219ENST00000556432 ZFPM1Q8IX07 1006 aa17.44■□□□□ 0.38
ACTN1-219ENST00000556432 GDF15Q99988 308 aa17.44■□□□□ 0.38
ACTN1-219ENST00000556432 CRISPLD2Q9H0B8 497 aa17.44■□□□□ 0.38
ACTN1-219ENST00000556432 SLC45A1Q9Y2W3 748 aa17.44■□□□□ 0.38
ACTN1-219ENST00000556432 MYH13Q9UKX3 1938 aa17.44■□□□□ 0.38
ACTN1-219ENST00000556432 SYN1P17600 705 aa17.43■□□□□ 0.38
ACTN1-219ENST00000556432 FGFR2P21802 821 aa17.43■□□□□ 0.38
ACTN1-219ENST00000556432 BMP8BP34820 402 aa17.43■□□□□ 0.38
ACTN1-219ENST00000556432 RGS3P49796 1198 aa17.43■□□□□ 0.38
ACTN1-219ENST00000556432 LPIN2Q92539 896 aa17.43■□□□□ 0.38
ACTN1-219ENST00000556432 AFG3L2Q9Y4W6 797 aa17.43■□□□□ 0.38
ACTN1-219ENST00000556432 UTYO14607 1347 aa17.43■□□□□ 0.38
ACTN1-219ENST00000556432 PHF20L1A8MW92 1017 aa17.42■□□□□ 0.38
ACTN1-219ENST00000556432 GPR153Q6NV75 609 aa17.42■□□□□ 0.38
ACTN1-219ENST00000556432 GNL3LQ9NVN8 582 aaKnown RBP17.42■□□□□ 0.38
ACTN1-219ENST00000556432 DOCK2Q92608 1830 aa17.42■□□□□ 0.38
ACTN1-219ENST00000556432 ALPK3Q96L96 1907 aa17.41■□□□□ 0.38
ACTN1-219ENST00000556432 HMGCRP04035 888 aa17.41■□□□□ 0.38
ACTN1-219ENST00000556432 MAGEA10P43363 369 aaPredicted RBP17.41■□□□□ 0.38
ACTN1-219ENST00000556432 NCBP3Q53F19 620 aaKnown RBP17.41■□□□□ 0.38
ACTN1-219ENST00000556432 ANKLE1Q8NAG6 615 aa17.41■□□□□ 0.38
ACTN1-219ENST00000556432 NBPF3Q9H094 633 aa17.41■□□□□ 0.38
ACTN1-219ENST00000556432 PNMA3Q9UL41 463 aa17.41■□□□□ 0.38
ACTN1-219ENST00000556432 AGTPBP1Q9UPW5 1226 aa17.41■□□□□ 0.38
ACTN1-219ENST00000556432 STXBP5LQ9Y2K9 1186 aa17.41■□□□□ 0.38
ACTN1-219ENST00000556432 CCDC84Q86UT8 332 aaPredicted RBP17.4■□□□□ 0.38
ACTN1-219ENST00000556432 TDHQ8IZJ6 230 aa17.4■□□□□ 0.38
ACTN1-219ENST00000556432 UBE2OQ9C0C9 1292 aaKnown RBP17.4■□□□□ 0.38
ACTN1-219ENST00000556432 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.4■□□□□ 0.38
ACTN1-219ENST00000556432 ATRNL1Q5VV63 1379 aa17.4■□□□□ 0.38
ACTN1-219ENST00000556432 EYA2O00167 538 aa17.39■□□□□ 0.37
ACTN1-219ENST00000556432 CTNND1O60716 968 aaKnown RBP17.39■□□□□ 0.37
ACTN1-219ENST00000556432 ENTPD3O75355 529 aa17.39■□□□□ 0.37
ACTN1-219ENST00000556432 PICALMQ13492 652 aa17.39■□□□□ 0.37
ACTN1-219ENST00000556432 FAM110CQ1W6H9 321 aa17.39■□□□□ 0.37
ACTN1-219ENST00000556432 C11orf49Q9H6J7 331 aa17.39■□□□□ 0.37
ACTN1-219ENST00000556432 HMX1Q9NP08 348 aaPredicted RBP17.39■□□□□ 0.37
ACTN1-219ENST00000556432 SLURP2P0DP57 97 aa17.38■□□□□ 0.37
ACTN1-219ENST00000556432 LRIT3Q3SXY7 679 aa17.38■□□□□ 0.37
ACTN1-219ENST00000556432 TREML2Q5T2D2 321 aa17.38■□□□□ 0.37
ACTN1-219ENST00000556432 DZIP1Q86YF9 867 aaKnown RBP17.38■□□□□ 0.37
ACTN1-219ENST00000556432 MTMR10Q9NXD2 777 aa17.38■□□□□ 0.37
ACTN1-219ENST00000556432 RPTORQ8N122 1335 aa17.38■□□□□ 0.37
ACTN1-219ENST00000556432 DOCK1Q14185 1865 aa17.37■□□□□ 0.37
ACTN1-219ENST00000556432 DOCK3Q8IZD9 2030 aa17.37■□□□□ 0.37
ACTN1-219ENST00000556432 TRIM32Q13049 653 aa17.37■□□□□ 0.37
ACTN1-219ENST00000556432 ATP2B3Q16720 1220 aa17.37■□□□□ 0.37
ACTN1-219ENST00000556432 SH3BP5LQ7L8J4 393 aa17.37■□□□□ 0.37
ACTN1-219ENST00000556432 IDI2Q9BXS1 227 aa17.37■□□□□ 0.37
ACTN1-219ENST00000556432 SIL1Q9H173 461 aa17.37■□□□□ 0.37
ACTN1-219ENST00000556432 MRS2Q9HD23 443 aa17.37■□□□□ 0.37
ACTN1-219ENST00000556432 DENND2AQ9ULE3 1009 aa17.37■□□□□ 0.37
ACTN1-219ENST00000556432 PTPRFP10586 1907 aa17.37■□□□□ 0.37
ACTN1-219ENST00000556432 DDTLA6NHG4 134 aaPredicted RBP17.36■□□□□ 0.37
ACTN1-219ENST00000556432 GCLCP48506 637 aaPredicted RBP17.36■□□□□ 0.37
ACTN1-219ENST00000556432 ZGPATQ8N5A5 531 aaKnown RBP17.36■□□□□ 0.37
ACTN1-219ENST00000556432 PHKA1P46020 1223 aa17.35■□□□□ 0.37
ACTN1-219ENST00000556432 PABPC4Q13310 644 aaKnown RBP eCLIP17.35■□□□□ 0.37
ACTN1-219ENST00000556432 SLF2Q8IX21 1173 aa17.35■□□□□ 0.37
ACTN1-219ENST00000556432 PROCA1Q8NCQ7 364 aaPredicted RBP17.35■□□□□ 0.37
ACTN1-219ENST00000556432 DDX4Q9NQI0 724 aaKnown RBP17.35■□□□□ 0.37
ACTN1-219ENST00000556432 CEP126Q9P2H0 1117 aa17.35■□□□□ 0.37
ACTN1-219ENST00000556432 ABCF2Q9UG63 623 aa17.35■□□□□ 0.37
ACTN1-219ENST00000556432 SALL1Q9NSC2 1324 aa17.35■□□□□ 0.37
ACTN1-219ENST00000556432 DDX60LQ5H9U9 1706 aaKnown RBP17.35■□□□□ 0.37
ACTN1-219ENST00000556432 SEMA3EO15041 775 aa17.34■□□□□ 0.37
ACTN1-219ENST00000556432 HMGCS2P54868 508 aa17.34■□□□□ 0.37
ACTN1-219ENST00000556432 SPP2Q13103 211 aa17.34■□□□□ 0.37
ACTN1-219ENST00000556432 COL25A1Q9BXS0 654 aaPredicted RBP17.34■□□□□ 0.37
ACTN1-219ENST00000556432 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.34■□□□□ 0.37
ACTN1-219ENST00000556432 MYH2Q9UKX2 1941 aa17.33■□□□□ 0.37
ACTN1-219ENST00000556432 RFX7Q2KHR2 1363 aa17.33■□□□□ 0.36
ACTN1-219ENST00000556432 GAKO14976 1311 aa17.33■□□□□ 0.36
ACTN1-219ENST00000556432 FAM196BA6NMK8 535 aa17.33■□□□□ 0.36
ACTN1-219ENST00000556432 PRKAR2AP13861 404 aaKnown RBP17.33■□□□□ 0.36
ACTN1-219ENST00000556432 CYP2B6P20813 491 aa17.33■□□□□ 0.36
ACTN1-219ENST00000556432 BTDP43251 543 aa17.33■□□□□ 0.36
ACTN1-219ENST00000556432 RFX5P48382 616 aaPredicted RBP17.33■□□□□ 0.36
ACTN1-219ENST00000556432 MAP3K10Q02779 954 aa17.33■□□□□ 0.36
ACTN1-219ENST00000556432 ATG9AQ7Z3C6 839 aa17.33■□□□□ 0.36
ACTN1-219ENST00000556432 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.33■□□□□ 0.36
ACTN1-219ENST00000556432 USP44Q9H0E7 712 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms