RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 RSBN1LQ6PCB5 846 aaPredicted RBP24.83■■□□□ 1.57
VPS28-208ENST00000527797 CHST3Q7LGC8 479 aa24.83■■□□□ 1.57
VPS28-208ENST00000527797 AMOTL1Q8IY63 956 aa24.83■■□□□ 1.57
VPS28-208ENST00000527797 INTS4Q96HW7 963 aaKnown RBP24.83■■□□□ 1.57
VPS28-208ENST00000527797 SCN9AQ15858 1988 aa24.83■■□□□ 1.57
VPS28-208ENST00000527797 COL4A5P29400 1685 aa24.83■■□□□ 1.57
VPS28-208ENST00000527797 LAMA4Q16363 1823 aa24.83■■□□□ 1.56
VPS28-208ENST00000527797 CYP2D7A0A087X1C5 515 aa24.83■■□□□ 1.56
VPS28-208ENST00000527797 B4E1Z4 1266 aa24.83■■□□□ 1.56
VPS28-208ENST00000527797 PSMD14O00487 310 aa24.83■■□□□ 1.56
VPS28-208ENST00000527797 SLC3A2P08195 630 aaKnown RBP24.83■■□□□ 1.56
VPS28-208ENST00000527797 FBXL16Q8N461 479 aa24.83■■□□□ 1.56
VPS28-208ENST00000527797 BRF1Q92994 677 aa24.83■■□□□ 1.56
VPS28-208ENST00000527797 ZDHHC15Q96MV8 337 aa24.83■■□□□ 1.56
VPS28-208ENST00000527797 AGXT2Q9BYV1 514 aa24.83■■□□□ 1.56
VPS28-208ENST00000527797 INCENPQ9NQS7 918 aa24.83■■□□□ 1.56
VPS28-208ENST00000527797 TOMM22Q9NS69 142 aa24.83■■□□□ 1.56
VPS28-208ENST00000527797 SERPINA10Q9UK55 444 aa24.83■■□□□ 1.56
VPS28-208ENST00000527797 TACC3Q9Y6A5 838 aa24.83■■□□□ 1.56
VPS28-208ENST00000527797 PCP11498 1178 aaKnown RBP24.82■■□□□ 1.56
VPS28-208ENST00000527797 MAPKAPK5Q8IW41 473 aa24.82■■□□□ 1.56
VPS28-208ENST00000527797 CWC22Q9HCG8 908 aaKnown RBP24.82■■□□□ 1.56
VPS28-208ENST00000527797 USP40Q9NVE5 1235 aa24.82■■□□□ 1.56
VPS28-208ENST00000527797 TIAM2Q8IVF5 1701 aa24.82■■□□□ 1.56
VPS28-208ENST00000527797 SOCS7O14512 581 aa24.81■■□□□ 1.56
VPS28-208ENST00000527797 USP17L8P0C7I0 530 aa24.81■■□□□ 1.56
VPS28-208ENST00000527797 RBM5P52756 815 aaKnown RBP eCLIP24.81■■□□□ 1.56
VPS28-208ENST00000527797 ANTXR2P58335 489 aa24.81■■□□□ 1.56
VPS28-208ENST00000527797 ME3Q16798 604 aa24.81■■□□□ 1.56
VPS28-208ENST00000527797 FER1L6Q2WGJ9 1857 aa24.81■■□□□ 1.56
VPS28-208ENST00000527797 APOBEC3HQ6NTF7 200 aaKnown RBP24.81■■□□□ 1.56
VPS28-208ENST00000527797 STK11IPQ8N1F8 1099 aa24.81■■□□□ 1.56
VPS28-208ENST00000527797 LARGE1O95461 756 aa24.8■■□□□ 1.56
VPS28-208ENST00000527797 RRP12Q5JTH9 1297 aaKnown RBP24.8■■□□□ 1.56
VPS28-208ENST00000527797 CYB5R4Q7L1T6 521 aa24.8■■□□□ 1.56
VPS28-208ENST00000527797 KDM4AO75164 1064 aa24.79■■□□□ 1.56
VPS28-208ENST00000527797 CYP2D6P10635 497 aa24.79■■□□□ 1.56
VPS28-208ENST00000527797 DDIT3P35638 169 aa24.79■■□□□ 1.56
VPS28-208ENST00000527797 C12orf60Q5U649 245 aa24.79■■□□□ 1.56
VPS28-208ENST00000527797 CHMP5Q9NZZ3 219 aa24.79■■□□□ 1.56
VPS28-208ENST00000527797 FLT1P17948 1338 aa24.79■■□□□ 1.56
VPS28-208ENST00000527797 POLR3DP05423 398 aaPredicted RBP24.79■■□□□ 1.56
VPS28-208ENST00000527797 FGRP09769 529 aa24.79■■□□□ 1.56
VPS28-208ENST00000527797 RASSF7Q02833 373 aa24.79■■□□□ 1.56
VPS28-208ENST00000527797 CXCL9Q07325 125 aa24.79■■□□□ 1.56
VPS28-208ENST00000527797 CDC42EP5Q6NZY7 148 aa24.79■■□□□ 1.56
VPS28-208ENST00000527797 HDAC9Q9UKV0 1011 aa24.79■■□□□ 1.56
VPS28-208ENST00000527797 SMIM22K7EJ46 135 aa24.78■■□□□ 1.56
VPS28-208ENST00000527797 CIAPIN1Q6FI81 312 aa24.78■■□□□ 1.56
VPS28-208ENST00000527797 AGBL3Q8NEM8 1001 aa24.78■■□□□ 1.56
VPS28-208ENST00000527797 ESR2Q92731 530 aa24.78■■□□□ 1.56
VPS28-208ENST00000527797 TMEM87BQ96K49 555 aa24.78■■□□□ 1.56
VPS28-208ENST00000527797 GMLQ99445 158 aa24.78■■□□□ 1.56
VPS28-208ENST00000527797 SYT17Q9BSW7 474 aa24.78■■□□□ 1.56
VPS28-208ENST00000527797 ZSWIM5Q9P217 1185 aa24.78■■□□□ 1.56
VPS28-208ENST00000527797 CIZ1Q9ULV3 898 aaPredicted RBP24.78■■□□□ 1.56
VPS28-208ENST00000527797 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.78■■□□□ 1.56
VPS28-208ENST00000527797 ZNF646O15015 1829 aaPredicted RBP24.78■■□□□ 1.56
VPS28-208ENST00000527797 PDE4BQ07343 736 aa24.77■■□□□ 1.56
VPS28-208ENST00000527797 APOBRQ0VD83 1088 aa24.77■■□□□ 1.56
VPS28-208ENST00000527797 TNIP1Q15025 636 aa24.77■■□□□ 1.56
VPS28-208ENST00000527797 NKX2-3Q8TAU0 364 aa24.77■■□□□ 1.56
VPS28-208ENST00000527797 SAP30BPQ9UHR5 308 aaKnown RBP24.77■■□□□ 1.56
VPS28-208ENST00000527797 CCDC83Q8IWF9 413 aa24.76■■□□□ 1.55
VPS28-208ENST00000527797 MTA3Q9BTC8 594 aa24.76■■□□□ 1.55
VPS28-208ENST00000527797 ORC4O43929 436 aa24.75■■□□□ 1.55
VPS28-208ENST00000527797 WDHD1O75717 1129 aaPredicted RBP24.75■■□□□ 1.55
VPS28-208ENST00000527797 CFAP100Q494V2 611 aa24.75■■□□□ 1.55
VPS28-208ENST00000527797 OGFOD1Q8N543 542 aa24.75■■□□□ 1.55
VPS28-208ENST00000527797 NECAB1Q8N987 351 aa24.75■■□□□ 1.55
VPS28-208ENST00000527797 ANGEL1Q9UNK9 670 aaKnown RBP24.75■■□□□ 1.55
VPS28-208ENST00000527797 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.75■■□□□ 1.551e-7■■■■□ 24.2
VPS28-208ENST00000527797 ZBTB12Q9Y330 459 aaPredicted RBP24.75■■□□□ 1.55
VPS28-208ENST00000527797 ARFGEF1Q9Y6D6 1849 aa24.75■■□□□ 1.55
VPS28-208ENST00000527797 SH2B2O14492 632 aaPredicted RBP24.75■■□□□ 1.55
VPS28-208ENST00000527797 EVCP57679 992 aa24.75■■□□□ 1.55
VPS28-208ENST00000527797 EVX2Q03828 476 aa24.75■■□□□ 1.55
VPS28-208ENST00000527797 STK3Q13188 491 aa24.75■■□□□ 1.55
VPS28-208ENST00000527797 PICALMQ13492 652 aa24.75■■□□□ 1.55
VPS28-208ENST00000527797 SART3Q15020 963 aaKnown RBP24.75■■□□□ 1.55
VPS28-208ENST00000527797 SLC4A8Q2Y0W8 1093 aa24.75■■□□□ 1.55
VPS28-208ENST00000527797 ARHGAP27Q6ZUM4 889 aa24.75■■□□□ 1.55
VPS28-208ENST00000527797 ZNF274Q96GC6 653 aaPredicted RBP24.75■■□□□ 1.55
VPS28-208ENST00000527797 GPHNQ9NQX3 736 aaPredicted RBP24.75■■□□□ 1.55
VPS28-208ENST00000527797 BAZ2AQ9UIF9 1905 aaKnown RBP24.74■■□□□ 1.55
VPS28-208ENST00000527797 IGDCC4Q8TDY8 1250 aa24.74■■□□□ 1.55
VPS28-208ENST00000527797 PCDHAC2Q9Y5I4 1007 aa24.74■■□□□ 1.55
VPS28-208ENST00000527797 PSME4Q14997 1843 aa24.74■■□□□ 1.55
VPS28-208ENST00000527797 ROBO3Q96MS0 1386 aa24.74■■□□□ 1.55
VPS28-208ENST00000527797 IFIT3O14879 490 aaKnown RBP24.73■■□□□ 1.55
VPS28-208ENST00000527797 RANBP6O60518 1105 aaKnown RBP24.73■■□□□ 1.55
VPS28-208ENST00000527797 PRDM1O75626 825 aa24.73■■□□□ 1.55
VPS28-208ENST00000527797 NT5C2P49902 561 aa24.73■■□□□ 1.55
VPS28-208ENST00000527797 TMEM67Q5HYA8 995 aa24.73■■□□□ 1.55
VPS28-208ENST00000527797 DDX4Q9NQI0 724 aaKnown RBP24.73■■□□□ 1.55
VPS28-208ENST00000527797 NAP1L2Q9ULW6 460 aaPredicted RBP24.73■■□□□ 1.55
VPS28-208ENST00000527797 ERICH2A1L162 156 aa24.72■■□□□ 1.55
VPS28-208ENST00000527797 PFKFB2O60825 505 aa24.72■■□□□ 1.55
VPS28-208ENST00000527797 PLCD1P51178 756 aa24.72■■□□□ 1.55
VPS28-208ENST00000527797 PRELPP51888 382 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms