RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 MYH1P12882 1939 aa9.83□□□□□ -0.84
RNF4-220ENST00000513578 MYH6P13533 1939 aa9.83□□□□□ -0.84
RNF4-220ENST00000513578 KLF18A0A0U1RQI7 1052 aa9.82□□□□□ -0.84
RNF4-220ENST00000513578 PRPF40AO75400 957 aaKnown RBP9.82□□□□□ -0.84
RNF4-220ENST00000513578 BAG3O95817 575 aa9.82□□□□□ -0.84
RNF4-220ENST00000513578 BAG6P46379 1132 aa9.82□□□□□ -0.84
RNF4-220ENST00000513578 EN1Q05925 392 aaPredicted RBP9.82□□□□□ -0.84
RNF4-220ENST00000513578 CTDSPL2Q05D32 466 aa9.82□□□□□ -0.84
RNF4-220ENST00000513578 SART3Q15020 963 aaKnown RBP9.82□□□□□ -0.84
RNF4-220ENST00000513578 PPP2R5BQ15173 497 aa9.82□□□□□ -0.84
RNF4-220ENST00000513578 GRIPAP1Q4V328 841 aa9.82□□□□□ -0.84
RNF4-220ENST00000513578 CC2D2BQ6DHV5 1058 aa9.82□□□□□ -0.84
RNF4-220ENST00000513578 CHST3Q7LGC8 479 aa9.82□□□□□ -0.84
RNF4-220ENST00000513578 DZIP1Q86YF9 867 aaKnown RBP9.82□□□□□ -0.84
RNF4-220ENST00000513578 MPNDQ8N594 471 aa9.82□□□□□ -0.84
RNF4-220ENST00000513578 FAM184AQ8NB25 1140 aa9.82□□□□□ -0.84
RNF4-220ENST00000513578 SLC16A10Q8TF71 515 aa9.82□□□□□ -0.84
RNF4-220ENST00000513578 TMX4Q9H1E5 349 aaPredicted RBP9.82□□□□□ -0.84
RNF4-220ENST00000513578 LY9Q9HBG7 655 aa9.82□□□□□ -0.84
RNF4-220ENST00000513578 ANO8Q9HCE9 1232 aaPredicted RBP9.82□□□□□ -0.84
RNF4-220ENST00000513578 MKRN1Q9UHC7 482 aaKnown RBP9.82□□□□□ -0.84
RNF4-220ENST00000513578 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.82□□□□□ -0.84
RNF4-220ENST00000513578 DDX49Q9Y6V7 483 aaKnown RBP9.82□□□□□ -0.84
RNF4-220ENST00000513578 MROH7-TTC4A0A0A0MT08 1334 aa9.82□□□□□ -0.84
RNF4-220ENST00000513578 GAKO14976 1311 aa9.82□□□□□ -0.84
RNF4-220ENST00000513578 ELP1O95163 1332 aa9.82□□□□□ -0.84
RNF4-220ENST00000513578 ROBO3Q96MS0 1386 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 GPR75-ASB3A0A0A6YYF3 556 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 FSD2A1L4K1 749 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 PTPDC1A2A3K4 754 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 H0YIN7 160 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 JAK2O60674 1132 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 KDM4AO75164 1064 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 CDKL5O76039 1030 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 SLC3A2P08195 630 aaKnown RBP9.81□□□□□ -0.84
RNF4-220ENST00000513578 PLCG2P16885 1265 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 FKBP1AP62942 108 aaKnown RBP9.81□□□□□ -0.84
RNF4-220ENST00000513578 ATL3Q6DD88 541 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 CTR9Q6PD62 1173 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 APOA5Q6Q788 366 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 SDR42E1Q8WUS8 393 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 ESR2Q92731 530 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 CNKSR1Q969H4 720 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 EYA3Q99504 573 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 RTFDC1Q9BY42 306 aaPredicted RBP9.81□□□□□ -0.84
RNF4-220ENST00000513578 DCP1AQ9NPI6 582 aaPredicted RBP9.81□□□□□ -0.84
RNF4-220ENST00000513578 GPHNQ9NQX3 736 aaPredicted RBP9.81□□□□□ -0.84
RNF4-220ENST00000513578 SNED1Q8TER0 1413 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 STK36Q9NRP7 1315 aa9.81□□□□□ -0.84
RNF4-220ENST00000513578 ERICH2A1L162 156 aa9.8□□□□□ -0.84
RNF4-220ENST00000513578 VPS37CA5D8V6 355 aaPredicted RBP9.8□□□□□ -0.84
RNF4-220ENST00000513578 GOLGA8BA8MQT2 603 aa9.8□□□□□ -0.84
RNF4-220ENST00000513578 C6orf229H3BNL8 230 aa9.8□□□□□ -0.84
RNF4-220ENST00000513578 IFIT3O14879 490 aaKnown RBP9.8□□□□□ -0.84
RNF4-220ENST00000513578 ZBTB43O43298 467 aa9.8□□□□□ -0.84
RNF4-220ENST00000513578 FDPSP14324 419 aaKnown RBP9.8□□□□□ -0.84
RNF4-220ENST00000513578 ZNF445P59923 1031 aa9.8□□□□□ -0.84
RNF4-220ENST00000513578 CCT2P78371 535 aaKnown RBP9.8□□□□□ -0.84
RNF4-220ENST00000513578 RESTQ13127 1097 aa9.8□□□□□ -0.84
RNF4-220ENST00000513578 SF3B2Q13435 895 aaKnown RBP9.8□□□□□ -0.84
RNF4-220ENST00000513578 SEC23AQ15436 765 aa9.8□□□□□ -0.84
RNF4-220ENST00000513578 TMEM67Q5HYA8 995 aa9.8□□□□□ -0.84
RNF4-220ENST00000513578 FOXD4L5Q5VV16 416 aaPredicted RBP9.8□□□□□ -0.84
RNF4-220ENST00000513578 CPLX2Q6PUV4 134 aaKnown RBP9.8□□□□□ -0.84
RNF4-220ENST00000513578 CDC37L1Q7L3B6 337 aa9.8□□□□□ -0.84
RNF4-220ENST00000513578 USP48Q86UV5 1035 aa9.8□□□□□ -0.84
RNF4-220ENST00000513578 C2CD5Q86YS7 1000 aa9.8□□□□□ -0.84
RNF4-220ENST00000513578 ZNF784Q8NCA9 323 aaPredicted RBP9.8□□□□□ -0.84
RNF4-220ENST00000513578 NKX2-3Q8TAU0 364 aa9.8□□□□□ -0.84
RNF4-220ENST00000513578 GPT2Q8TD30 523 aa9.8□□□□□ -0.84
RNF4-220ENST00000513578 FOXD4L4Q8WXT5 416 aaPredicted RBP9.8□□□□□ -0.84
RNF4-220ENST00000513578 NOL10Q9BSC4 688 aaKnown RBP9.8□□□□□ -0.84
RNF4-220ENST00000513578 MRIQ9BWK5 157 aa9.8□□□□□ -0.84
RNF4-220ENST00000513578 ZC3H12CQ9C0D7 883 aaKnown RBP9.8□□□□□ -0.84
RNF4-220ENST00000513578 AATFQ9NY61 560 aaKnown RBP eCLIP9.8□□□□□ -0.84
RNF4-220ENST00000513578 C10orf71Q711Q0 1435 aa9.8□□□□□ -0.84
RNF4-220ENST00000513578 MINDY4BA8MYZ0 360 aa9.79□□□□□ -0.84
RNF4-220ENST00000513578 USP17L12C9JPN9 530 aa9.79□□□□□ -0.84
RNF4-220ENST00000513578 USP17L21D6R901 530 aa9.79□□□□□ -0.84
RNF4-220ENST00000513578 H3BQV1 296 aa9.79□□□□□ -0.84
RNF4-220ENST00000513578 CAPN15O75808 1086 aa9.79□□□□□ -0.84
RNF4-220ENST00000513578 NCLP19338 710 aaKnown RBP9.79□□□□□ -0.84
RNF4-220ENST00000513578 METAP2P50579 478 aaKnown RBP eCLIP9.79□□□□□ -0.84
RNF4-220ENST00000513578 UBE2HP62256 183 aa9.79□□□□□ -0.84
RNF4-220ENST00000513578 KRT85P78386 507 aa9.79□□□□□ -0.84
RNF4-220ENST00000513578 WTAPQ15007 396 aa9.79□□□□□ -0.84
RNF4-220ENST00000513578 NTRK3Q16288 839 aa9.79□□□□□ -0.84
RNF4-220ENST00000513578 L1TD1Q5T7N2 865 aaKnown RBP9.79□□□□□ -0.84
RNF4-220ENST00000513578 C12orf60Q5U649 245 aa9.79□□□□□ -0.84
RNF4-220ENST00000513578 DPP8Q6V1X1 898 aaPredicted RBP9.79□□□□□ -0.84
RNF4-220ENST00000513578 SYNE3Q6ZMZ3 975 aa9.79□□□□□ -0.84
RNF4-220ENST00000513578 PODNQ7Z5L7 613 aa9.79□□□□□ -0.84
RNF4-220ENST00000513578 SLC51AQ86UW1 340 aa9.79□□□□□ -0.84
RNF4-220ENST00000513578 C7orf43Q8WVR3 580 aa9.79□□□□□ -0.84
RNF4-220ENST00000513578 GPR101Q96P66 508 aaPredicted RBP9.79□□□□□ -0.84
RNF4-220ENST00000513578 SCAND2PQ9GZW5 306 aaPredicted RBP9.79□□□□□ -0.84
RNF4-220ENST00000513578 NCOA5Q9HCD5 579 aaKnown RBP9.79□□□□□ -0.84
RNF4-220ENST00000513578 SLC12A7Q9Y666 1083 aa9.79□□□□□ -0.84
RNF4-220ENST00000513578 MYH8P13535 1937 aa9.79□□□□□ -0.84
RNF4-220ENST00000513578 CCDC196A0A1B0GTZ2 297 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms