RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ZNF589Q86UQ0 364 aaPredicted RBP14.29□□□□□ -0.12
CUX1-210ENST00000497815 TICAM2Q86XR7 235 aa14.29□□□□□ -0.12
CUX1-210ENST00000497815 ZFPM1Q8IX07 1006 aa14.29□□□□□ -0.12
CUX1-210ENST00000497815 STRBPQ96SI9 672 aaKnown RBP14.29□□□□□ -0.12
CUX1-210ENST00000497815 IDI2Q9BXS1 227 aa14.29□□□□□ -0.12
CUX1-210ENST00000497815 TMEM39BQ9GZU3 492 aa14.29□□□□□ -0.12
CUX1-210ENST00000497815 SAP30BPQ9UHR5 308 aaKnown RBP14.29□□□□□ -0.12
CUX1-210ENST00000497815 CNTNAP1P78357 1384 aa14.29□□□□□ -0.12
CUX1-210ENST00000497815 ECM29Q5VYK3 1845 aa14.29□□□□□ -0.12
CUX1-210ENST00000497815 APPP05067 770 aa14.28□□□□□ -0.12
CUX1-210ENST00000497815 FLT1P17948 1338 aa14.28□□□□□ -0.12
CUX1-210ENST00000497815 FMR1Q06787 632 aaKnown RBP eCLIP14.28□□□□□ -0.12
CUX1-210ENST00000497815 SLC4A8Q2Y0W8 1093 aa14.28□□□□□ -0.12
CUX1-210ENST00000497815 ZSCAN29Q8IWY8 852 aaPredicted RBP14.28□□□□□ -0.12
CUX1-210ENST00000497815 SMC1BQ8NDV3 1235 aa14.28□□□□□ -0.12
CUX1-210ENST00000497815 RUFY2Q8WXA3 655 aa14.28□□□□□ -0.12
CUX1-210ENST00000497815 CCDC171Q6TFL3 1326 aa14.27□□□□□ -0.12
CUX1-210ENST00000497815 ENTPD3O75355 529 aa14.27□□□□□ -0.13
CUX1-210ENST00000497815 FKBP1CQ5VVH2 108 aa14.27□□□□□ -0.13
CUX1-210ENST00000497815 CASC1Q6TDU7 716 aa14.27□□□□□ -0.13
CUX1-210ENST00000497815 FAM83AQ86UY5 434 aa14.27□□□□□ -0.13
CUX1-210ENST00000497815 CDAN1Q8IWY9 1227 aa14.27□□□□□ -0.13
CUX1-210ENST00000497815 RBM46Q8TBY0 533 aaKnown RBP14.27□□□□□ -0.13
CUX1-210ENST00000497815 FAM151AQ8WW52 585 aa14.27□□□□□ -0.13
CUX1-210ENST00000497815 CDCA5Q96FF9 252 aa14.27□□□□□ -0.13
CUX1-210ENST00000497815 IL25Q9H293 177 aa14.27□□□□□ -0.13
CUX1-210ENST00000497815 ZNF408Q9H9D4 720 aa14.27□□□□□ -0.13
CUX1-210ENST00000497815 GNAT2P19087 354 aa14.26□□□□□ -0.13
CUX1-210ENST00000497815 VPS53Q5VIR6 699 aa14.26□□□□□ -0.13
CUX1-210ENST00000497815 DDRGK1Q96HY6 314 aa14.26□□□□□ -0.13
CUX1-210ENST00000497815 OSBPL5Q9H0X9 879 aaPredicted RBP14.26□□□□□ -0.13
CUX1-210ENST00000497815 MCM9Q9NXL9 1143 aa14.26□□□□□ -0.13
CUX1-210ENST00000497815 PALD1Q9ULE6 856 aa14.26□□□□□ -0.13
CUX1-210ENST00000497815 DDTLA6NHG4 134 aaPredicted RBP14.25□□□□□ -0.13
CUX1-210ENST00000497815 GSG1L2A8MUP6 293 aa14.25□□□□□ -0.13
CUX1-210ENST00000497815 PATL2C9JE40 543 aaKnown RBP14.25□□□□□ -0.13
CUX1-210ENST00000497815 ITGBL1O95965 494 aaPredicted RBP14.25□□□□□ -0.13
CUX1-210ENST00000497815 TDO2P48775 406 aa14.25□□□□□ -0.13
CUX1-210ENST00000497815 MFAP1P55081 439 aaKnown RBP14.25□□□□□ -0.13
CUX1-210ENST00000497815 NBPF12Q5TAG4 269 aaPredicted RBP14.25□□□□□ -0.13
CUX1-210ENST00000497815 SH3BP5LQ7L8J4 393 aa14.25□□□□□ -0.13
CUX1-210ENST00000497815 TEPSINQ96N21 525 aa14.25□□□□□ -0.13
CUX1-210ENST00000497815 ESYT1Q9BSJ8 1104 aa14.25□□□□□ -0.13
CUX1-210ENST00000497815 DCP1AQ9NPI6 582 aaPredicted RBP14.25□□□□□ -0.13
CUX1-210ENST00000497815 ATP8A2Q9NTI2 1148 aa14.25□□□□□ -0.13
CUX1-210ENST00000497815 PPP2R3BQ9Y5P8 575 aa14.25□□□□□ -0.13
CUX1-210ENST00000497815 RAD50Q92878 1312 aa14.24□□□□□ -0.13
CUX1-210ENST00000497815 SGSM2O43147 1006 aa14.24□□□□□ -0.13
CUX1-210ENST00000497815 POLR3DP05423 398 aaPredicted RBP14.24□□□□□ -0.13
CUX1-210ENST00000497815 CYP2D6P10635 497 aa14.24□□□□□ -0.13
CUX1-210ENST00000497815 PRKG1Q13976 671 aa14.24□□□□□ -0.13
CUX1-210ENST00000497815 CSRNP1Q96S65 589 aa14.24□□□□□ -0.13
CUX1-210ENST00000497815 NACAP1Q9BZK3 213 aa14.24□□□□□ -0.13
CUX1-210ENST00000497815 EPB41L4AQ9HCS5 686 aaPredicted RBP14.24□□□□□ -0.13
CUX1-210ENST00000497815 CYP2D7A0A087X1C5 515 aa14.23□□□□□ -0.13
CUX1-210ENST00000497815 FOXP2O15409 715 aa14.23□□□□□ -0.13
CUX1-210ENST00000497815 SLURP2P0DP57 97 aa14.23□□□□□ -0.13
CUX1-210ENST00000497815 HSPD1P10809 573 aaKnown RBP14.23□□□□□ -0.13
CUX1-210ENST00000497815 EVX2Q03828 476 aa14.23□□□□□ -0.13
CUX1-210ENST00000497815 FSTL1Q12841 308 aa14.23□□□□□ -0.13
CUX1-210ENST00000497815 MIGA2Q7L4E1 593 aa14.23□□□□□ -0.13
CUX1-210ENST00000497815 IFNL3Q8IZI9 196 aa14.23□□□□□ -0.13
CUX1-210ENST00000497815 NAPBQ9H115 298 aa14.23□□□□□ -0.13
CUX1-210ENST00000497815 MKRN1Q9UHC7 482 aaKnown RBP14.23□□□□□ -0.13
CUX1-210ENST00000497815 FZD1Q9UP38 647 aa14.23□□□□□ -0.13
CUX1-210ENST00000497815 CDK5RAP2Q96SN8 1893 aa14.23□□□□□ -0.13
CUX1-210ENST00000497815 MINDY4BA8MYZ0 360 aa14.22□□□□□ -0.13
CUX1-210ENST00000497815 USP17L12C9JPN9 530 aa14.22□□□□□ -0.13
CUX1-210ENST00000497815 USP17L21D6R901 530 aa14.22□□□□□ -0.13
CUX1-210ENST00000497815 CELF2O95319 508 aaKnown RBP14.22□□□□□ -0.13
CUX1-210ENST00000497815 HLA-DOAP06340 250 aa14.22□□□□□ -0.13
CUX1-210ENST00000497815 NF2P35240 595 aa14.22□□□□□ -0.13
CUX1-210ENST00000497815 TTLL12Q14166 644 aaPredicted RBP14.22□□□□□ -0.13
CUX1-210ENST00000497815 SUPT20HL1Q3ZLR7 823 aa14.22□□□□□ -0.13
CUX1-210ENST00000497815 AMOTL1Q8IY63 956 aa14.22□□□□□ -0.13
CUX1-210ENST00000497815 DHX36Q9H2U1 1008 aaKnown RBP14.22□□□□□ -0.13
CUX1-210ENST00000497815 NAV1Q8NEY1 1877 aa14.22□□□□□ -0.13
CUX1-210ENST00000497815 FOCADQ5VW36 1801 aa14.22□□□□□ -0.13
CUX1-210ENST00000497815 SSC5DA1L4H1 1573 aa14.22□□□□□ -0.13
CUX1-210ENST00000497815 ATRNL1Q5VV63 1379 aa14.22□□□□□ -0.13
CUX1-210ENST00000497815 RPAP1Q9BWH6 1393 aaPredicted RBP14.22□□□□□ -0.13
CUX1-210ENST00000497815 FAM196BA6NMK8 535 aa14.21□□□□□ -0.13
CUX1-210ENST00000497815 SMIM22K7EJ46 135 aa14.21□□□□□ -0.13
CUX1-210ENST00000497815 KCNA4P22459 653 aa14.21□□□□□ -0.13
CUX1-210ENST00000497815 PLCD1P51178 756 aa14.21□□□□□ -0.13
CUX1-210ENST00000497815 PTH1RQ03431 593 aa14.21□□□□□ -0.13
CUX1-210ENST00000497815 GIMAP6Q6P9H5 292 aa14.21□□□□□ -0.13
CUX1-210ENST00000497815 CTR9Q6PD62 1173 aa14.21□□□□□ -0.13
CUX1-210ENST00000497815 KIAA1211Q6ZU35 1233 aa14.21□□□□□ -0.13
CUX1-210ENST00000497815 TTC6Q86TZ1 520 aa14.21□□□□□ -0.13
CUX1-210ENST00000497815 STK11IPQ8N1F8 1099 aa14.21□□□□□ -0.13
CUX1-210ENST00000497815 TRIM34Q9BYJ4 488 aa14.21□□□□□ -0.13
CUX1-210ENST00000497815 ANO2Q9NQ90 1003 aa14.21□□□□□ -0.13
CUX1-210ENST00000497815 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.21□□□□□ -0.13
CUX1-210ENST00000497815 ARPP21Q9UBL0 812 aaPredicted RBP14.21□□□□□ -0.13
CUX1-210ENST00000497815 POLR2AP24928 1970 aaKnown RBP14.21□□□□□ -0.13
CUX1-210ENST00000497815 PASKQ96RG2 1323 aa14.2□□□□□ -0.14
CUX1-210ENST00000497815 COL2A1P02458 1487 aaPredicted RBP14.2□□□□□ -0.14
CUX1-210ENST00000497815 FGAP02671 866 aa14.2□□□□□ -0.14
CUX1-210ENST00000497815 MOB2Q70IA6 237 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms