RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 MYO1BO43795 1136 aa20.64■□□□□ 0.89
LIME1-208ENST00000493265 TICAM2Q86XR7 235 aa20.64■□□□□ 0.89
LIME1-208ENST00000493265 TEX11Q8IYF3 940 aa20.64■□□□□ 0.89
LIME1-208ENST00000493265 ZBED3Q96IU2 234 aaPredicted RBP20.64■□□□□ 0.89
LIME1-208ENST00000493265 RIOK1Q9BRS2 568 aaKnown RBP20.64■□□□□ 0.89
LIME1-208ENST00000493265 PLCG2P16885 1265 aa20.63■□□□□ 0.89
LIME1-208ENST00000493265 MAP2K2P36507 400 aa20.63■□□□□ 0.89
LIME1-208ENST00000493265 PPP4CP60510 307 aa20.63■□□□□ 0.89
LIME1-208ENST00000493265 ZNF589Q86UQ0 364 aaPredicted RBP20.63■□□□□ 0.89
LIME1-208ENST00000493265 IL25Q9H293 177 aa20.63■□□□□ 0.89
LIME1-208ENST00000493265 TMOD2Q9NZR1 351 aa20.63■□□□□ 0.89
LIME1-208ENST00000493265 ZNF70Q9UC06 446 aaPredicted RBP20.63■□□□□ 0.89
LIME1-208ENST00000493265 PGAP2Q9UHJ9 254 aa20.63■□□□□ 0.89
LIME1-208ENST00000493265 SCAF8Q9UPN6 1271 aaKnown RBP20.63■□□□□ 0.89
LIME1-208ENST00000493265 TCP10L2B9ZVM9 353 aa20.62■□□□□ 0.89
LIME1-208ENST00000493265 PRKAB2O43741 272 aa20.62■□□□□ 0.89
LIME1-208ENST00000493265 APPP05067 770 aa20.62■□□□□ 0.89
LIME1-208ENST00000493265 RHBDL3P58872 404 aa20.62■□□□□ 0.89
LIME1-208ENST00000493265 PICALMQ13492 652 aa20.62■□□□□ 0.89
LIME1-208ENST00000493265 TGFBRAP1Q8WUH2 860 aa20.62■□□□□ 0.89
LIME1-208ENST00000493265 STRBPQ96SI9 672 aaKnown RBP20.62■□□□□ 0.89
LIME1-208ENST00000493265 ESYT1Q9BSJ8 1104 aa20.62■□□□□ 0.89
LIME1-208ENST00000493265 CRNKL1Q9BZJ0 848 aaKnown RBP20.62■□□□□ 0.89
LIME1-208ENST00000493265 SLC4A4Q9Y6R1 1079 aa20.62■□□□□ 0.89
LIME1-208ENST00000493265 CCDC171Q6TFL3 1326 aa20.61■□□□□ 0.89
LIME1-208ENST00000493265 USP5P45974 858 aa20.61■□□□□ 0.89
LIME1-208ENST00000493265 ANGEL2Q5VTE6 544 aaKnown RBP20.61■□□□□ 0.89
LIME1-208ENST00000493265 CDC37L1Q7L3B6 337 aa20.61■□□□□ 0.89
LIME1-208ENST00000493265 ZC3H15Q8WU90 426 aaKnown RBP20.61■□□□□ 0.89
LIME1-208ENST00000493265 SDR42E1Q8WUS8 393 aa20.61■□□□□ 0.89
LIME1-208ENST00000493265 CASP8AP2Q9UKL3 1982 aa20.61■□□□□ 0.89
LIME1-208ENST00000493265 POLR2AP24928 1970 aaKnown RBP20.6■□□□□ 0.89
LIME1-208ENST00000493265 CCDC85CA6NKD9 419 aa20.6■□□□□ 0.89
LIME1-208ENST00000493265 SGSM2O43147 1006 aa20.6■□□□□ 0.89
LIME1-208ENST00000493265 MFAP1P55081 439 aaKnown RBP20.6■□□□□ 0.89
LIME1-208ENST00000493265 SPDYE2Q495Y8 402 aa20.6■□□□□ 0.89
LIME1-208ENST00000493265 MAPKAPK5Q8IW41 473 aa20.6■□□□□ 0.89
LIME1-208ENST00000493265 GGA3Q9NZ52 723 aa20.6■□□□□ 0.89
LIME1-208ENST00000493265 RAD50Q92878 1312 aa20.59■□□□□ 0.89
LIME1-208ENST00000493265 TCP10Q12799 353 aa20.59■□□□□ 0.89
LIME1-208ENST00000493265 NFIAQ12857 509 aa20.59■□□□□ 0.89
LIME1-208ENST00000493265 VPS53Q5VIR6 699 aa20.59■□□□□ 0.89
LIME1-208ENST00000493265 DLK2Q6UY11 383 aa20.59■□□□□ 0.89
LIME1-208ENST00000493265 USP48Q86UV5 1035 aa20.59■□□□□ 0.89
LIME1-208ENST00000493265 CERS3Q8IU89 383 aa20.59■□□□□ 0.89
LIME1-208ENST00000493265 ECM29Q5VYK3 1845 aa20.58■□□□□ 0.89
LIME1-208ENST00000493265 WDHD1O75717 1129 aaPredicted RBP20.58■□□□□ 0.89
LIME1-208ENST00000493265 SLC4A8Q2Y0W8 1093 aa20.58■□□□□ 0.89
LIME1-208ENST00000493265 HHIPL1Q96JK4 782 aa20.58■□□□□ 0.89
LIME1-208ENST00000493265 DDX4Q9NQI0 724 aaKnown RBP20.58■□□□□ 0.89
LIME1-208ENST00000493265 SAP30BPQ9UHR5 308 aaKnown RBP20.58■□□□□ 0.89
LIME1-208ENST00000493265 GNAT2P19087 354 aa20.57■□□□□ 0.88
LIME1-208ENST00000493265 KIAA1211Q6ZU35 1233 aa20.57■□□□□ 0.88
LIME1-208ENST00000493265 DCPSQ96C86 337 aaKnown RBP20.57■□□□□ 0.88
LIME1-208ENST00000493265 ANO2Q9NQ90 1003 aa20.57■□□□□ 0.88
LIME1-208ENST00000493265 PATL2C9JE40 543 aaKnown RBP20.56■□□□□ 0.88
LIME1-208ENST00000493265 ZFPM1Q8IX07 1006 aa20.56■□□□□ 0.88
LIME1-208ENST00000493265 FAM198AQ9UFP1 575 aa20.56■□□□□ 0.88
LIME1-208ENST00000493265 FLT1P17948 1338 aa20.55■□□□□ 0.88
LIME1-208ENST00000493265 GSG1L2A8MUP6 293 aa20.55■□□□□ 0.88
LIME1-208ENST00000493265 CA12O43570 354 aa20.55■□□□□ 0.88
LIME1-208ENST00000493265 HSPD1P10809 573 aaKnown RBP20.55■□□□□ 0.88
LIME1-208ENST00000493265 TDO2P48775 406 aa20.55■□□□□ 0.88
LIME1-208ENST00000493265 HUNKP57058 714 aa20.55■□□□□ 0.88
LIME1-208ENST00000493265 PTH1RQ03431 593 aa20.55■□□□□ 0.88
LIME1-208ENST00000493265 C8orf34Q49A92 452 aa20.55■□□□□ 0.88
LIME1-208ENST00000493265 APOBEC3FQ8IUX4 373 aaKnown RBP20.55■□□□□ 0.88
LIME1-208ENST00000493265 ZSCAN29Q8IWY8 852 aaPredicted RBP20.55■□□□□ 0.88
LIME1-208ENST00000493265 DDRGK1Q96HY6 314 aa20.55■□□□□ 0.88
LIME1-208ENST00000493265 ZIC5Q96T25 663 aa20.55■□□□□ 0.88
LIME1-208ENST00000493265 CDK5RAP2Q96SN8 1893 aa20.54■□□□□ 0.88
LIME1-208ENST00000493265 TNNI2P48788 182 aa20.54■□□□□ 0.88
LIME1-208ENST00000493265 KRT26Q7Z3Y9 468 aa20.54■□□□□ 0.88
LIME1-208ENST00000493265 IFNL3Q8IZI9 196 aa20.54■□□□□ 0.88
LIME1-208ENST00000493265 IDI2Q9BXS1 227 aa20.54■□□□□ 0.88
LIME1-208ENST00000493265 NACAP1Q9BZK3 213 aa20.54■□□□□ 0.88
LIME1-208ENST00000493265 TMEM39BQ9GZU3 492 aa20.54■□□□□ 0.88
LIME1-208ENST00000493265 EPB41L4AQ9HCS5 686 aaPredicted RBP20.54■□□□□ 0.88
LIME1-208ENST00000493265 DCP1AQ9NPI6 582 aaPredicted RBP20.54■□□□□ 0.88
LIME1-208ENST00000493265 ATP8A2Q9NTI2 1148 aa20.54■□□□□ 0.88
LIME1-208ENST00000493265 MCM9Q9NXL9 1143 aa20.54■□□□□ 0.88
LIME1-208ENST00000493265 ADM5C9JUS6 153 aa20.53■□□□□ 0.88
LIME1-208ENST00000493265 FOXP2O15409 715 aa20.53■□□□□ 0.88
LIME1-208ENST00000493265 TNFAIP1Q13829 316 aa20.53■□□□□ 0.88
LIME1-208ENST00000493265 RASA3Q14644 834 aa20.53■□□□□ 0.88
LIME1-208ENST00000493265 PRAMEF18Q5VWM3 479 aa20.53■□□□□ 0.88
LIME1-208ENST00000493265 SULF1Q8IWU6 871 aa20.53■□□□□ 0.88
LIME1-208ENST00000493265 MCOLN1Q9GZU1 580 aa20.53■□□□□ 0.88
LIME1-208ENST00000493265 OSBPL5Q9H0X9 879 aaPredicted RBP20.53■□□□□ 0.88
LIME1-208ENST00000493265 NAPBQ9H115 298 aa20.53■□□□□ 0.88
LIME1-208ENST00000493265 PALD1Q9ULE6 856 aa20.53■□□□□ 0.88
LIME1-208ENST00000493265 NAV1Q8NEY1 1877 aa20.52■□□□□ 0.88
LIME1-208ENST00000493265 CYP2D7A0A087X1C5 515 aa20.52■□□□□ 0.88
LIME1-208ENST00000493265 POLR3DP05423 398 aaPredicted RBP20.52■□□□□ 0.88
LIME1-208ENST00000493265 CYP2D6P10635 497 aa20.52■□□□□ 0.88
LIME1-208ENST00000493265 NOGQ13253 232 aa20.52■□□□□ 0.88
LIME1-208ENST00000493265 DEFB129Q9H1M3 183 aa20.52■□□□□ 0.88
LIME1-208ENST00000493265 PITPNM2Q9BZ72 1349 aa20.52■□□□□ 0.87
LIME1-208ENST00000493265 FOCADQ5VW36 1801 aa20.51■□□□□ 0.87
LIME1-208ENST00000493265 MINDY4BA8MYZ0 360 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms