RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, human

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
C9orf3-215	ENST00000478473	RAI14	Q9P0K7	980 aa		28.71	■■■□□ 2.19
C9orf3-215	ENST00000478473	LRP2BP	Q9P2M1	347 aa		28.71	■■■□□ 2.19
C9orf3-215	ENST00000478473	CAPN15	O75808	1086 aa		28.7	■■■□□ 2.18
C9orf3-215	ENST00000478473	C20orf194	Q5TEA3	1177 aa		28.7	■■■□□ 2.18
C9orf3-215	ENST00000478473	OTUD7B	Q6GQQ9	843 aa		28.7	■■■□□ 2.18
C9orf3-215	ENST00000478473	RHPN1	Q8TCX5	695 aa		28.7	■■■□□ 2.18
C9orf3-215	ENST00000478473	ZKSCAN4	Q969J2	545 aa	Predicted RBP	28.7	■■■□□ 2.18
C9orf3-215	ENST00000478473	SNRK	Q9NRH2	765 aa		28.7	■■■□□ 2.18
C9orf3-215	ENST00000478473	COL2A1	P02458	1487 aa	Predicted RBP	28.7	■■■□□ 2.18
C9orf3-215	ENST00000478473	PPP4C	P60510	307 aa		28.69	■■■□□ 2.18
C9orf3-215	ENST00000478473	PPIL2	Q13356	520 aa		28.69	■■■□□ 2.18
C9orf3-215	ENST00000478473	CTU1	Q7Z7A3	348 aa	Known RBP	28.69	■■■□□ 2.18
C9orf3-215	ENST00000478473	BRI3BP	Q8WY22	251 aa		28.69	■■■□□ 2.18
C9orf3-215	ENST00000478473	KIF1BP	Q96EK5	621 aa		28.69	■■■□□ 2.18
C9orf3-215	ENST00000478473	PHF20L1	A8MW92	1017 aa		28.68	■■■□□ 2.18
C9orf3-215	ENST00000478473	INPP5B	P32019	993 aa		28.68	■■■□□ 2.18
C9orf3-215	ENST00000478473	ZAP70	P43403	619 aa		28.68	■■■□□ 2.18
C9orf3-215	ENST00000478473	PPAT	Q06203	517 aa		28.68	■■■□□ 2.18
C9orf3-215	ENST00000478473	OTUD5	Q96G74	571 aa		28.68	■■■□□ 2.18
C9orf3-215	ENST00000478473	MAST2	Q6P0Q8	1798 aa		28.67	■■■□□ 2.18
C9orf3-215	ENST00000478473	TMED8	Q6PL24	325 aa	Predicted RBP	28.67	■■■□□ 2.18
C9orf3-215	ENST00000478473	ZCCHC17	Q9NP64	241 aa	Known RBP	28.67	■■■□□ 2.18
C9orf3-215	ENST00000478473	DDTL	A6NHG4	134 aa	Predicted RBP	28.66	■■■□□ 2.18
C9orf3-215	ENST00000478473	TBC1D12	O60347	775 aa		28.66	■■■□□ 2.18
C9orf3-215	ENST00000478473	RAB11FIP3	O75154	756 aa		28.66	■■■□□ 2.18
C9orf3-215	ENST00000478473	AACS	Q86V21	672 aa		28.66	■■■□□ 2.18
C9orf3-215	ENST00000478473	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	28.66	■■■□□ 2.18
C9orf3-215	ENST00000478473	DOCK2	Q92608	1830 aa		28.66	■■■□□ 2.18
C9orf3-215	ENST00000478473	IRF6	O14896	467 aa		28.65	■■■□□ 2.18
C9orf3-215	ENST00000478473	FKTN	O75072	461 aa		28.65	■■■□□ 2.18
C9orf3-215	ENST00000478473	PKN2	Q16513	984 aa	Known RBP	28.65	■■■□□ 2.18
C9orf3-215	ENST00000478473	NAA16	Q6N069	864 aa	Predicted RBP	28.65	■■■□□ 2.18
C9orf3-215	ENST00000478473	PIH1D3	Q9NQM4	214 aa	Known RBP	28.65	■■■□□ 2.18
C9orf3-215	ENST00000478473	CCL15-CCL14	A0A0B4J2E2	113 aa		28.64	■■■□□ 2.18
C9orf3-215	ENST00000478473	CCL15	Q16663	113 aa		28.64	■■■□□ 2.18
C9orf3-215	ENST00000478473	KCNH4	Q9UQ05	1017 aa		28.64	■■■□□ 2.18
C9orf3-215	ENST00000478473	AK9	Q5TCS8	1911 aa		28.63	■■■□□ 2.17
C9orf3-215	ENST00000478473	BAG3	O95817	575 aa		28.63	■■■□□ 2.17
C9orf3-215	ENST00000478473	CETP	P11597	493 aa		28.63	■■■□□ 2.17
C9orf3-215	ENST00000478473	CRHR2	Q13324	411 aa		28.63	■■■□□ 2.17
C9orf3-215	ENST00000478473	SNAPC2	Q13487	334 aa		28.63	■■■□□ 2.17
C9orf3-215	ENST00000478473	CLASRP	Q8N2M8	674 aa	Known RBP	28.63	■■■□□ 2.17
C9orf3-215	ENST00000478473	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	28.63	■■■□□ 2.17
C9orf3-215	ENST00000478473	IL1RAPL2	Q9NP60	686 aa		28.63	■■■□□ 2.17
C9orf3-215	ENST00000478473	PLCG2	P16885	1265 aa		28.62	■■■□□ 2.17
C9orf3-215	ENST00000478473	PICALM	Q13492	652 aa		28.61	■■■□□ 2.17
C9orf3-215	ENST00000478473	ADGRA1	Q86SQ6	560 aa		28.61	■■■□□ 2.17
C9orf3-215	ENST00000478473	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	28.61	■■■□□ 2.17
C9orf3-215	ENST00000478473	OSBPL5	Q9H0X9	879 aa	Predicted RBP	28.61	■■■□□ 2.17
C9orf3-215	ENST00000478473	SCYL3	Q8IZE3	742 aa		28.6	■■■□□ 2.17
C9orf3-215	ENST00000478473	FAM43A	Q8N2R8	423 aa		28.6	■■■□□ 2.17
C9orf3-215	ENST00000478473	MYO5A	Q9Y4I1	1855 aa	Known RBP	28.59	■■■□□ 2.17
C9orf3-215	ENST00000478473	TEX11	Q8IYF3	940 aa		28.59	■■■□□ 2.17
C9orf3-215	ENST00000478473	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	28.59	■■■□□ 2.17
C9orf3-215	ENST00000478473	NOL10	Q9BSC4	688 aa	Known RBP	28.59	■■■□□ 2.17
C9orf3-215	ENST00000478473	AATF	Q9NY61	560 aa	Known RBP eCLIP	28.59	■■■□□ 2.17
C9orf3-215	ENST00000478473	CTNND1	O60716	968 aa	Known RBP	28.58	■■■□□ 2.17
C9orf3-215	ENST00000478473	CERS3	Q8IU89	383 aa		28.58	■■■□□ 2.17
C9orf3-215	ENST00000478473	CXCL11	O14625	94 aa		28.57	■■■□□ 2.16
C9orf3-215	ENST00000478473	MOGS	Q13724	837 aa		28.57	■■■□□ 2.16
C9orf3-215	ENST00000478473	DHX36	Q9H2U1	1008 aa	Known RBP	28.57	■■■□□ 2.16
C9orf3-215	ENST00000478473	ANTXR1	Q9H6X2	564 aa		28.57	■■■□□ 2.16
C9orf3-215	ENST00000478473	BTBD19	C9JJ37	291 aa		28.56	■■■□□ 2.16
C9orf3-215	ENST00000478473	RGS19	P49795	217 aa		28.56	■■■□□ 2.16
C9orf3-215	ENST00000478473	METTL16	Q86W50	562 aa	Known RBP	28.56	■■■□□ 2.16
C9orf3-215	ENST00000478473	ZFYVE28	Q9HCC9	887 aa		28.56	■■■□□ 2.16
C9orf3-215	ENST00000478473	PTPRA	P18433	802 aa		28.55	■■■□□ 2.16
C9orf3-215	ENST00000478473	MAP3K12	Q12852	859 aa		28.55	■■■□□ 2.16
C9orf3-215	ENST00000478473	TTF1	Q15361	905 aa	Predicted RBP	28.55	■■■□□ 2.16
C9orf3-215	ENST00000478473	TAF1C	Q15572	869 aa	Predicted RBP	28.55	■■■□□ 2.16
C9orf3-215	ENST00000478473	ANKRD23	Q86SG2	305 aa		28.55	■■■□□ 2.16
C9orf3-215	ENST00000478473	HERC5	Q9UII4	1024 aa	Known RBP	28.55	■■■□□ 2.16
C9orf3-215	ENST00000478473	CCDC85C	A6NKD9	419 aa		28.54	■■■□□ 2.16
C9orf3-215	ENST00000478473	IDH1	O75874	414 aa	Known RBP	28.54	■■■□□ 2.16
C9orf3-215	ENST00000478473	IFIT2	P09913	472 aa	Known RBP	28.54	■■■□□ 2.16
C9orf3-215	ENST00000478473	SLURP2	P0DP57	97 aa		28.54	■■■□□ 2.16
C9orf3-215	ENST00000478473	CYP7A1	P22680	504 aa		28.54	■■■□□ 2.16
C9orf3-215	ENST00000478473	FBXO46	Q6PJ61	603 aa	Predicted RBP	28.54	■■■□□ 2.16
C9orf3-215	ENST00000478473	ERO1A	Q96HE7	468 aa		28.54	■■■□□ 2.16
C9orf3-215	ENST00000478473	PI4KB	Q9UBF8	816 aa		28.54	■■■□□ 2.16
C9orf3-215	ENST00000478473	FOCAD	Q5VW36	1801 aa		28.54	■■■□□ 2.16
C9orf3-215	ENST00000478473	FLT1	P17948	1338 aa		28.53	■■■□□ 2.16
C9orf3-215	ENST00000478473	SP3	Q02447	781 aa		28.53	■■■□□ 2.16
C9orf3-215	ENST00000478473	PICK1	Q9NRD5	415 aa		28.53	■■■□□ 2.16
C9orf3-215	ENST00000478473	AFG3L2	Q9Y4W6	797 aa		28.53	■■■□□ 2.16
C9orf3-215	ENST00000478473	NDUFB9	Q9Y6M9	179 aa		28.53	■■■□□ 2.16
C9orf3-215	ENST00000478473	TLR2	O60603	784 aa		28.52	■■■□□ 2.16
C9orf3-215	ENST00000478473	DCTPP1	Q9H773	170 aa		28.52	■■■□□ 2.16
C9orf3-215	ENST00000478473	CDK5RAP2	Q96SN8	1893 aa		28.52	■■■□□ 2.16
C9orf3-215	ENST00000478473	DOCK1	Q14185	1865 aa		28.51	■■■□□ 2.15
C9orf3-215	ENST00000478473	APBB1	O00213	710 aa		28.51	■■■□□ 2.15
C9orf3-215	ENST00000478473	ATP5J	P18859	108 aa		28.51	■■■□□ 2.15
C9orf3-215	ENST00000478473	MAGEB6	Q8N7X4	407 aa		28.51	■■■□□ 2.15
C9orf3-215	ENST00000478473	TGFBRAP1	Q8WUH2	860 aa		28.51	■■■□□ 2.15
C9orf3-215	ENST00000478473	LRRCC1	Q9C099	1032 aa		28.51	■■■□□ 2.15
C9orf3-215	ENST00000478473	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	28.51	■■■□□ 2.15	4e-8	■■■■■ 37.5
C9orf3-215	ENST00000478473	HPS5	Q9UPZ3	1129 aa		28.51	■■■□□ 2.15
C9orf3-215	ENST00000478473	ZHX2	Q9Y6X8	837 aa		28.51	■■■□□ 2.15
C9orf3-215	ENST00000478473		A0A0G2JLL6	359 aa	Predicted RBP	28.5	■■■□□ 2.15
C9orf3-215	ENST00000478473	OTOP1	Q7RTM1	612 aa		28.5	■■■□□ 2.15

Retrieved 100 of 20,778 RNA–protein pairs in 133.4 ms