RNA–Protein interactions for RNA: ENST00000448404.5

SF1-211, Transcript of splicing factor 1, humanhuman

TSL 1 (best)

Gene SF1, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-211ENST00000448404 SYNE3Q6ZMZ3 975 aa17.21■□□□□ 0.35
SF1-211ENST00000448404 NBPF5PQ86XG9 351 aaPredicted RBP17.21■□□□□ 0.35
SF1-211ENST00000448404 AHDC1Q5TGY3 1603 aaPredicted RBP17.21■□□□□ 0.35
SF1-211ENST00000448404 FAM205CA6NFA0 338 aa17.21■□□□□ 0.35
SF1-211ENST00000448404 DHX16O60231 1041 aaKnown RBP17.21■□□□□ 0.35
SF1-211ENST00000448404 CYP2D6P10635 497 aa17.21■□□□□ 0.35
SF1-211ENST00000448404 FMR1NBQ8N0W7 255 aaPredicted RBP17.21■□□□□ 0.35
SF1-211ENST00000448404 RTEL1Q9NZ71 1219 aa17.21■□□□□ 0.35
SF1-211ENST00000448404 DPCR1Q3MIW9 517 aa17.2■□□□□ 0.34
SF1-211ENST00000448404 MRPS27Q92552 414 aaKnown RBP17.2■□□□□ 0.34
SF1-211ENST00000448404 CDC5LQ99459 802 aaKnown RBP17.2■□□□□ 0.34
SF1-211ENST00000448404 AATFQ9NY61 560 aaKnown RBP eCLIP17.2■□□□□ 0.341e-6■■□□□ 14.4
SF1-211ENST00000448404 ZNF652Q9Y2D9 606 aa17.2■□□□□ 0.34
SF1-211ENST00000448404 PPARAQ07869 468 aa17.2■□□□□ 0.34
SF1-211ENST00000448404 ANO1Q5XXA6 986 aa17.2■□□□□ 0.34
SF1-211ENST00000448404 OXER1Q8TDS5 423 aa17.2■□□□□ 0.34
SF1-211ENST00000448404 ATRNO75882 1429 aa17.2■□□□□ 0.34
SF1-211ENST00000448404 DDX60Q8IY21 1712 aaKnown RBP17.19■□□□□ 0.34
SF1-211ENST00000448404 NOLC1Q14978 699 aaKnown RBP eCLIP17.19■□□□□ 0.34
SF1-211ENST00000448404 BARGINQ6ZT62 677 aa17.19■□□□□ 0.34
SF1-211ENST00000448404 FBXL16Q8N461 479 aa17.19■□□□□ 0.34
SF1-211ENST00000448404 AOPEPQ8N6M6 819 aa17.19■□□□□ 0.34
SF1-211ENST00000448404 MTMR7Q9Y216 660 aa17.19■□□□□ 0.34
SF1-211ENST00000448404 SRCAPQ6ZRS2 3230 aa17.19■□□□□ 0.34
SF1-211ENST00000448404 MAGEB6P1A0A0J9YX57 407 aa17.19■□□□□ 0.34
SF1-211ENST00000448404 PDIA4P13667 645 aaKnown RBP17.19■□□□□ 0.34
SF1-211ENST00000448404 IQCB1Q15051 598 aa17.19■□□□□ 0.34
SF1-211ENST00000448404 NOM1Q5C9Z4 860 aaKnown RBP17.19■□□□□ 0.34
SF1-211ENST00000448404 SHISA4Q96DD7 197 aa17.19■□□□□ 0.34
SF1-211ENST00000448404 FOXN1O15353 648 aa17.18■□□□□ 0.34
SF1-211ENST00000448404 HSP90AA4PQ58FG1 418 aa17.18■□□□□ 0.34
SF1-211ENST00000448404 FAM47AQ5JRC9 791 aa17.18■□□□□ 0.34
SF1-211ENST00000448404 AXDND1Q5T1B0 1012 aaPredicted RBP17.18■□□□□ 0.34
SF1-211ENST00000448404 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.18■□□□□ 0.34
SF1-211ENST00000448404 ARHGEF1Q92888 912 aaKnown RBP17.18■□□□□ 0.34
SF1-211ENST00000448404 CCNL1Q9UK58 526 aaPredicted RBP17.18■□□□□ 0.34
SF1-211ENST00000448404 PFKFB1P16118 471 aa17.18■□□□□ 0.34
SF1-211ENST00000448404 SETDB2Q96T68 719 aa17.18■□□□□ 0.34
SF1-211ENST00000448404 PRDM4Q9UKN5 801 aa17.18■□□□□ 0.34
SF1-211ENST00000448404 ZNF75DP51815 510 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 WTAPQ15007 396 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 GRIK5Q16478 980 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 ADALQ6DHV7 355 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 SMARCC1Q92922 1105 aaPredicted RBP17.17■□□□□ 0.34
SF1-211ENST00000448404 UQCRHLA0A096LP55 91 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 UQCRHP07919 91 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 VEGFAP15692 232 aaPredicted RBP17.17■□□□□ 0.34
SF1-211ENST00000448404 RIOK1Q9BRS2 568 aaKnown RBP17.17■□□□□ 0.34
SF1-211ENST00000448404 BCL9LQ86UU0 1499 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 LRP5O75197 1615 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 LTBP4Q8N2S1 1624 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 NRAPQ86VF7 1730 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 USP17L12C9JPN9 530 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 USP17L21D6R901 530 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 ZNF202O95125 648 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 RPS8P62241 208 aaKnown RBP17.17■□□□□ 0.34
SF1-211ENST00000448404 NFIXQ14938 502 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 FILIP1Q7Z7B0 1213 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 DHX40Q8IX18 779 aaKnown RBP17.17■□□□□ 0.34
SF1-211ENST00000448404 AK7Q96M32 723 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 NACAP1Q9BZK3 213 aa17.17■□□□□ 0.34
SF1-211ENST00000448404 ZPR1O75312 459 aa17.16■□□□□ 0.34
SF1-211ENST00000448404 SHC4Q6S5L8 630 aa17.16■□□□□ 0.34
SF1-211ENST00000448404 TMEM87BQ96K49 555 aa17.16■□□□□ 0.34
SF1-211ENST00000448404 BSDC1Q9NW68 430 aaPredicted RBP17.16■□□□□ 0.34
SF1-211ENST00000448404 USP21Q9UK80 565 aa17.16■□□□□ 0.34
SF1-211ENST00000448404 COL22A1Q8NFW1 1626 aaPredicted RBP17.16■□□□□ 0.34
SF1-211ENST00000448404 TNKSO95271 1327 aa17.16■□□□□ 0.34
SF1-211ENST00000448404 PLEKHA8P1O95397 391 aa17.16■□□□□ 0.34
SF1-211ENST00000448404 MECOMQ03112 1051 aa17.16■□□□□ 0.34
SF1-211ENST00000448404 RTN1Q16799 776 aa17.16■□□□□ 0.34
SF1-211ENST00000448404 TDRD7Q8NHU6 1098 aaKnown RBP17.16■□□□□ 0.34
SF1-211ENST00000448404 BECN2A8MW95 431 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 ADAMTS3O15072 1205 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 TOM1O60784 492 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 ALX1Q15699 326 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 CAVIN4Q5BKX8 364 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 EARS2Q5JPH6 523 aaKnown RBP17.15■□□□□ 0.34
SF1-211ENST00000448404 POLR3EQ9NVU0 708 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 VPS54Q9P1Q0 977 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 CLIP2Q9UDT6 1046 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 WNK3Q9BYP7 1800 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 GOLGA6L19H0YKK7 550 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 WNT7AO00755 349 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 SSRP1Q08945 709 aaKnown RBP17.15■□□□□ 0.34
SF1-211ENST00000448404 PNOCQ13519 176 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 USP49Q70CQ1 688 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 SGMS1Q86VZ5 419 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 TICAM2Q86XR7 235 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 GRAMD1CQ8IYS0 662 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 ZNF654Q8IZM8 581 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 UBAC1Q9BSL1 405 aa17.15■□□□□ 0.34
SF1-211ENST00000448404 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.15■□□□□ 0.34
SF1-211ENST00000448404 TOB1P50616 345 aaPredicted RBP17.14■□□□□ 0.33
SF1-211ENST00000448404 SF3B3Q15393 1217 aaKnown RBP17.14■□□□□ 0.33
SF1-211ENST00000448404 DIXDC1Q155Q3 683 aa17.14■□□□□ 0.33
SF1-211ENST00000448404 STX1AQ16623 288 aa17.14■□□□□ 0.33
SF1-211ENST00000448404 DIS3L2Q8IYB7 885 aaKnown RBP17.14■□□□□ 0.33
SF1-211ENST00000448404 PDILTQ8N807 584 aa17.14■□□□□ 0.33
SF1-211ENST00000448404 CACTINQ8WUQ7 758 aaKnown RBP17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms