RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 NFXL1Q6ZNB6 911 aa11.05□□□□□ -0.64
CUX1-206ENST00000437600 TXNRD3Q86VQ6 643 aa11.05□□□□□ -0.64
CUX1-206ENST00000437600 MB21D2Q8IYB1 491 aaPredicted RBP11.05□□□□□ -0.64
CUX1-206ENST00000437600 FAM200AQ8TCP9 573 aa11.05□□□□□ -0.64
CUX1-206ENST00000437600 AGXT2Q9BYV1 514 aa11.05□□□□□ -0.64
CUX1-206ENST00000437600 CTNNA3Q9UI47 895 aa11.05□□□□□ -0.64
CUX1-206ENST00000437600 COL24A1Q17RW2 1714 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 UQCRFS1P1P0C7P4 283 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 ATP2B1P20020 1258 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 RPS8P62241 208 aaKnown RBP11.04□□□□□ -0.64
CUX1-206ENST00000437600 TRDNQ13061 729 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 CHAF1AQ13111 956 aaPredicted RBP11.04□□□□□ -0.64
CUX1-206ENST00000437600 NOLC1Q14978 699 aaKnown RBP eCLIP11.04□□□□□ -0.643e-6■■□□□ 12.3
CUX1-206ENST00000437600 SPECC1Q5M775 1068 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 CCDC186Q7Z3E2 898 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 FSIP1Q8NA03 581 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 ZNF274Q96GC6 653 aaPredicted RBP11.04□□□□□ -0.64
CUX1-206ENST00000437600 CLSTN2Q9H4D0 955 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 ZSCAN16Q9H4T2 348 aaPredicted RBP11.04□□□□□ -0.64
CUX1-206ENST00000437600 STK32BQ9NY57 414 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 ELP1O95163 1332 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 hCG_1642624A0A1W2PR95 340 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 PSDA5PKW4 1024 aaPredicted RBP11.04□□□□□ -0.64
CUX1-206ENST00000437600 TM4SF1P30408 202 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 SNW1Q13573 536 aaKnown RBP11.04□□□□□ -0.64
CUX1-206ENST00000437600 UVSSAQ2YD98 709 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 LRRFIP1Q32MZ4 808 aaKnown RBP11.04□□□□□ -0.64
CUX1-206ENST00000437600 OLFM4Q6UX06 510 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 ADGRA1Q86SQ6 560 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 SDR42E1Q8WUS8 393 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 SDF4Q9BRK5 362 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 RAI14Q9P0K7 980 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 ZSWIM5Q9P217 1185 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 NEDD4P46934 1319 aa11.04□□□□□ -0.64
CUX1-206ENST00000437600 ZBTB7AO95365 584 aa11.03□□□□□ -0.64
CUX1-206ENST00000437600 EVX2Q03828 476 aa11.03□□□□□ -0.64
CUX1-206ENST00000437600 KIAA2012Q0VF49 1180 aa11.03□□□□□ -0.64
CUX1-206ENST00000437600 SF3B3Q15393 1217 aaKnown RBP11.03□□□□□ -0.64
CUX1-206ENST00000437600 PTPN21Q16825 1174 aa11.03□□□□□ -0.64
CUX1-206ENST00000437600 RCOR1Q9UKL0 485 aa11.03□□□□□ -0.64
CUX1-206ENST00000437600 UQCRHLA0A096LP55 91 aa11.03□□□□□ -0.64
CUX1-206ENST00000437600 MINDY4BA8MYZ0 360 aa11.03□□□□□ -0.64
CUX1-206ENST00000437600 UQCRHP07919 91 aa11.03□□□□□ -0.64
CUX1-206ENST00000437600 NDUFA8P51970 172 aa11.03□□□□□ -0.64
CUX1-206ENST00000437600 HMGN5P82970 282 aaKnown RBP11.03□□□□□ -0.64
CUX1-206ENST00000437600 MAP3K12Q12852 859 aa11.03□□□□□ -0.64
CUX1-206ENST00000437600 TTF1Q15361 905 aaPredicted RBP11.03□□□□□ -0.64
CUX1-206ENST00000437600 LCORLQ8N3X6 602 aa11.03□□□□□ -0.64
CUX1-206ENST00000437600 STRBPQ96SI9 672 aaKnown RBP11.03□□□□□ -0.64
CUX1-206ENST00000437600 NYXQ9GZU5 481 aa11.03□□□□□ -0.64
CUX1-206ENST00000437600 CACNA1SQ13698 1873 aa11.03□□□□□ -0.64
CUX1-206ENST00000437600 CYP2D7A0A087X1C5 515 aa11.03□□□□□ -0.64
CUX1-206ENST00000437600 TCRBV5S4A2TA0A5A2 114 aa11.03□□□□□ -0.64
CUX1-206ENST00000437600 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.03□□□□□ -0.64
CUX1-206ENST00000437600 LLPHQ9BRT6 129 aaKnown RBP11.03□□□□□ -0.64
CUX1-206ENST00000437600 BSDC1Q9NW68 430 aaPredicted RBP11.03□□□□□ -0.64
CUX1-206ENST00000437600 PRDM1O75626 825 aa11.02□□□□□ -0.65
CUX1-206ENST00000437600 STK38Q15208 465 aa11.02□□□□□ -0.65
CUX1-206ENST00000437600 FBXO18Q8NFZ0 1043 aa11.02□□□□□ -0.65
CUX1-206ENST00000437600 FAM84BQ96KN1 310 aaPredicted RBP11.02□□□□□ -0.65
CUX1-206ENST00000437600 EPB41L4AQ9HCS5 686 aaPredicted RBP11.02□□□□□ -0.65
CUX1-206ENST00000437600 SALL1Q9NSC2 1324 aa11.02□□□□□ -0.65
CUX1-206ENST00000437600 GUCY1A2P33402 732 aa11.02□□□□□ -0.65
CUX1-206ENST00000437600 IFNL3Q8IZI9 196 aa11.02□□□□□ -0.65
CUX1-206ENST00000437600 NAPBQ9H115 298 aa11.02□□□□□ -0.65
CUX1-206ENST00000437600 DDX19AQ9NUU7 478 aaKnown RBP11.02□□□□□ -0.65
CUX1-206ENST00000437600 ANKIB1Q9P2G1 1089 aa11.02□□□□□ -0.65
CUX1-206ENST00000437600 ZNF219Q9P2Y4 722 aaPredicted RBP11.02□□□□□ -0.65
CUX1-206ENST00000437600 CYP7A1P22680 504 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 METAP2P50579 478 aaKnown RBP eCLIP11.01□□□□□ -0.653e-6■■■■□ 24.7
CUX1-206ENST00000437600 R3HDM1Q15032 1099 aaKnown RBP11.01□□□□□ -0.65
CUX1-206ENST00000437600 UBE3CQ15386 1083 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 NAA16Q6N069 864 aaPredicted RBP11.01□□□□□ -0.65
CUX1-206ENST00000437600 ZSCAN25Q6NSZ9 544 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 NUP133Q8WUM0 1156 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 CLIC6Q96NY7 704 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 ATF5Q9Y2D1 282 aaPredicted RBP11.01□□□□□ -0.65
CUX1-206ENST00000437600 IFIT3O14879 490 aaKnown RBP11.01□□□□□ -0.65
CUX1-206ENST00000437600 TMEM67Q5HYA8 995 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 SYNE3Q6ZMZ3 975 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 CCDC73Q6ZRK6 1079 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 FILIP1Q7Z7B0 1213 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 PIBF1Q8WXW3 757 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 ZNF512BQ96KM6 892 aaPredicted RBP11.01□□□□□ -0.65
CUX1-206ENST00000437600 ALG1Q9BT22 464 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 KCNJ14Q9UNX9 436 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 SLC4A4Q9Y6R1 1079 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 ANKRD31Q8N7Z5 1873 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 KINO60870 393 aaKnown RBP11.01□□□□□ -0.65
CUX1-206ENST00000437600 DYNLL1P63167 89 aaKnown RBP11.01□□□□□ -0.65
CUX1-206ENST00000437600 GNL2Q13823 731 aaKnown RBP11.01□□□□□ -0.65
CUX1-206ENST00000437600 CCDC144BQ3MJ40 725 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 HSP90AA4PQ58FG1 418 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 CAVIN4Q5BKX8 364 aa11.01□□□□□ -0.65
CUX1-206ENST00000437600 UPF1Q92900 1129 aaKnown RBP eCLIP11.01□□□□□ -0.65
CUX1-206ENST00000437600 ANGEL1Q9UNK9 670 aaKnown RBP11.01□□□□□ -0.65
CUX1-206ENST00000437600 WDHD1O75717 1129 aaPredicted RBP11□□□□□ -0.65
CUX1-206ENST00000437600 TDO2P48775 406 aa11□□□□□ -0.65
CUX1-206ENST00000437600 ST5P78524 1137 aa11□□□□□ -0.65
CUX1-206ENST00000437600 APOA5Q6Q788 366 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms