RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SYNGAP1Q96PV0 1343 aa5.9□□□□□ -1.46
HMGB1-204ENST00000399489 TMEM238LA0A1B0GVL6 79 aa5.9□□□□□ -1.47
HMGB1-204ENST00000399489 EIF1AYO14602 144 aaKnown RBP5.9□□□□□ -1.47
HMGB1-204ENST00000399489 RECKO95980 971 aa5.9□□□□□ -1.47
HMGB1-204ENST00000399489 PPP2R3AQ06190 1150 aa5.9□□□□□ -1.47
HMGB1-204ENST00000399489 CYP27C1Q4G0S4 372 aa5.9□□□□□ -1.47
HMGB1-204ENST00000399489 GIMAP6Q6P9H5 292 aa5.9□□□□□ -1.47
HMGB1-204ENST00000399489 FLCNQ8NFG4 579 aa5.9□□□□□ -1.47
HMGB1-204ENST00000399489 ACSS3Q9H6R3 686 aa5.9□□□□□ -1.47
HMGB1-204ENST00000399489 LRRC4CQ9HCJ2 640 aa5.9□□□□□ -1.47
HMGB1-204ENST00000399489 NLRP2Q9NX02 1062 aa5.9□□□□□ -1.47
HMGB1-204ENST00000399489 PPP1R1BQ9UD71 204 aaPredicted RBP5.9□□□□□ -1.47
HMGB1-204ENST00000399489 ADGRE2Q9UHX3 823 aa5.9□□□□□ -1.47
HMGB1-204ENST00000399489 DAGLAQ9Y4D2 1042 aa5.9□□□□□ -1.47
HMGB1-204ENST00000399489 SOWAHDA6NJG2 315 aa5.89□□□□□ -1.47
HMGB1-204ENST00000399489 FAM170BA6NMN3 283 aa5.89□□□□□ -1.47
HMGB1-204ENST00000399489 CTSBP07858 339 aa5.89□□□□□ -1.47
HMGB1-204ENST00000399489 ADMP35318 185 aa5.89□□□□□ -1.47
HMGB1-204ENST00000399489 DTHD1Q6ZMT9 781 aa5.89□□□□□ -1.47
HMGB1-204ENST00000399489 CSRNP1Q96S65 589 aa5.89□□□□□ -1.47
HMGB1-204ENST00000399489 TRIM56Q9BRZ2 755 aaKnown RBP5.89□□□□□ -1.47
HMGB1-204ENST00000399489 ATXN3LQ9H3M9 355 aa5.89□□□□□ -1.47
HMGB1-204ENST00000399489 SEMA6CQ9H3T2 930 aa5.89□□□□□ -1.47
HMGB1-204ENST00000399489 LSRQ86X29 649 aaPredicted RBP5.88□□□□□ -1.47
HMGB1-204ENST00000399489 ABI1Q8IZP0 508 aa5.88□□□□□ -1.47
HMGB1-204ENST00000399489 FAM105AQ9NUU6 356 aa5.88□□□□□ -1.47
HMGB1-204ENST00000399489 B8ZZF3 427 aa5.88□□□□□ -1.47
HMGB1-204ENST00000399489 XRCC5P13010 732 aaKnown RBP5.88□□□□□ -1.47
HMGB1-204ENST00000399489 STK11IPQ8N1F8 1099 aa5.88□□□□□ -1.47
HMGB1-204ENST00000399489 WDR18Q9BV38 432 aa5.88□□□□□ -1.47
HMGB1-204ENST00000399489 GSX1Q9H4S2 264 aaPredicted RBP5.88□□□□□ -1.47
HMGB1-204ENST00000399489 ABCB6Q9NP58 842 aa5.88□□□□□ -1.47
HMGB1-204ENST00000399489 GPN3Q9UHW5 284 aaPredicted RBP5.88□□□□□ -1.47
HMGB1-204ENST00000399489 ANKRD33BA6NCL7 494 aa5.87□□□□□ -1.47
HMGB1-204ENST00000399489 ID3Q02535 119 aa5.87□□□□□ -1.47
HMGB1-204ENST00000399489 ECM1Q16610 540 aa5.87□□□□□ -1.47
HMGB1-204ENST00000399489 ZNF326Q5BKZ1 582 aaKnown RBP5.87□□□□□ -1.47
HMGB1-204ENST00000399489 OGFOD3Q6PK18 319 aa5.87□□□□□ -1.47
HMGB1-204ENST00000399489 ASIC4Q96FT7 647 aa5.87□□□□□ -1.47
HMGB1-204ENST00000399489 RBCK1Q9BYM8 510 aa5.87□□□□□ -1.47
HMGB1-204ENST00000399489 KRT82Q9NSB4 513 aa5.87□□□□□ -1.47
HMGB1-204ENST00000399489 BIN2Q9UBW5 565 aaPredicted RBP5.87□□□□□ -1.47
HMGB1-204ENST00000399489 GPR182O15218 404 aa5.86□□□□□ -1.47
HMGB1-204ENST00000399489 LIG1P18858 919 aa5.86□□□□□ -1.47
HMGB1-204ENST00000399489 ARHGAP27Q6ZUM4 889 aa5.86□□□□□ -1.47
HMGB1-204ENST00000399489 ZNF765Q7L2R6 523 aa5.86□□□□□ -1.47
HMGB1-204ENST00000399489 SHISA5Q8N114 240 aa5.86□□□□□ -1.47
HMGB1-204ENST00000399489 GATA6Q92908 595 aa5.86□□□□□ -1.47
HMGB1-204ENST00000399489 ALKBH8Q96BT7 664 aaKnown RBP5.86□□□□□ -1.47
HMGB1-204ENST00000399489 SLC5A6Q9Y289 635 aa5.86□□□□□ -1.47
HMGB1-204ENST00000399489 ECEL1O95672 775 aa5.85□□□□□ -1.47
HMGB1-204ENST00000399489 ZNF157P51786 506 aaPredicted RBP5.85□□□□□ -1.47
HMGB1-204ENST00000399489 FCGRTP55899 365 aa5.85□□□□□ -1.47
HMGB1-204ENST00000399489 GRM2Q14416 872 aa5.85□□□□□ -1.47
HMGB1-204ENST00000399489 MISP3Q96FF7 219 aa5.85□□□□□ -1.47
HMGB1-204ENST00000399489 EMILIN2Q9BXX0 1053 aa5.85□□□□□ -1.47
HMGB1-204ENST00000399489 LGR6Q9HBX8 967 aa5.85□□□□□ -1.47
HMGB1-204ENST00000399489 TMEM39AQ9NV64 488 aa5.85□□□□□ -1.47
HMGB1-204ENST00000399489 ZC3H7BQ9UGR2 993 aaKnown RBP5.85□□□□□ -1.47
HMGB1-204ENST00000399489 TMPRSS2O15393 492 aa5.85□□□□□ -1.47
HMGB1-204ENST00000399489 RNGTTO60942 597 aaKnown RBP5.85□□□□□ -1.47
HMGB1-204ENST00000399489 GSTP1P09211 210 aaKnown RBP5.85□□□□□ -1.47
HMGB1-204ENST00000399489 JUNBP17275 347 aaPredicted RBP5.85□□□□□ -1.47
HMGB1-204ENST00000399489 ZNF662Q6ZS27 426 aa5.85□□□□□ -1.47
HMGB1-204ENST00000399489 ZC3H12CQ9C0D7 883 aaKnown RBP5.85□□□□□ -1.47
HMGB1-204ENST00000399489 SSU72Q9NP77 194 aaKnown RBP5.85□□□□□ -1.47
HMGB1-204ENST00000399489 CRIM1Q9NZV1 1036 aa5.85□□□□□ -1.47
HMGB1-204ENST00000399489 PPP1R9AQ9ULJ8 1098 aa5.85□□□□□ -1.47
HMGB1-204ENST00000399489 BUD31P41223 144 aaPredicted RBP5.84□□□□□ -1.47
HMGB1-204ENST00000399489 NOL8Q76FK4 1167 aaKnown RBP5.84□□□□□ -1.47
HMGB1-204ENST00000399489 DPH6Q7L8W6 267 aa5.84□□□□□ -1.47
HMGB1-204ENST00000399489 FBXO33Q7Z6M2 555 aa5.84□□□□□ -1.47
HMGB1-204ENST00000399489 SMYD4Q8IYR2 804 aaPredicted RBP5.84□□□□□ -1.47
HMGB1-204ENST00000399489 KCNB2Q92953 911 aa5.84□□□□□ -1.47
HMGB1-204ENST00000399489 CCDC86Q9H6F5 360 aaKnown RBP5.84□□□□□ -1.47
HMGB1-204ENST00000399489 C1GALT1Q9NS00 363 aa5.84□□□□□ -1.47
HMGB1-204ENST00000399489 PCOLCE2Q9UKZ9 415 aa5.84□□□□□ -1.47
HMGB1-204ENST00000399489 BIN1O00499 593 aa5.83□□□□□ -1.48
HMGB1-204ENST00000399489 ZNF865P0CJ78 1059 aaPredicted RBP5.83□□□□□ -1.48
HMGB1-204ENST00000399489 KIF4BQ2VIQ3 1234 aa5.83□□□□□ -1.48
HMGB1-204ENST00000399489 SEZ6L2Q6UXD5 910 aa5.83□□□□□ -1.48
HMGB1-204ENST00000399489 EPS8L3Q8TE67 593 aaKnown RBP5.83□□□□□ -1.48
HMGB1-204ENST00000399489 FANCD2OSQ96PS1 177 aa5.83□□□□□ -1.48
HMGB1-204ENST00000399489 PSMD1Q99460 953 aa5.83□□□□□ -1.48
HMGB1-204ENST00000399489 DCTN4Q9UJW0 460 aa5.83□□□□□ -1.48
HMGB1-204ENST00000399489 SAMM50Q9Y512 469 aa5.83□□□□□ -1.48
HMGB1-204ENST00000399489 MARCH6O60337 910 aa5.82□□□□□ -1.48
HMGB1-204ENST00000399489 FAM87AP0C7U9 286 aa5.82□□□□□ -1.48
HMGB1-204ENST00000399489 PLCB3Q01970 1234 aa5.82□□□□□ -1.48
HMGB1-204ENST00000399489 PLCL1Q15111 1095 aa5.82□□□□□ -1.48
HMGB1-204ENST00000399489 AKAP2Q9Y2D5 859 aa5.82□□□□□ -1.48
HMGB1-204ENST00000399489 TAGLNQ01995 201 aaKnown RBP5.82□□□□□ -1.48
HMGB1-204ENST00000399489 FAAP100Q0VG06 881 aa5.82□□□□□ -1.48
HMGB1-204ENST00000399489 SULF2Q8IWU5 870 aa5.82□□□□□ -1.48
HMGB1-204ENST00000399489 GLIS3Q8NEA6 775 aa5.82□□□□□ -1.48
HMGB1-204ENST00000399489 NETO1Q8TDF5 533 aa5.82□□□□□ -1.48
HMGB1-204ENST00000399489 BCO2Q9BYV7 579 aa5.82□□□□□ -1.48
HMGB1-204ENST00000399489 PAK6Q9NQU5 681 aaPredicted RBP5.82□□□□□ -1.48
HMGB1-204ENST00000399489 DYNC1LI2O43237 492 aaPredicted RBP5.81□□□□□ -1.48
HMGB1-204ENST00000399489 ZNF862O60290 1169 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms