RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 VGLL2Q8N8G2 317 aa14.63□□□□□ -0.07
SHMT1-205ENST00000395684 ZNF512BQ96KM6 892 aaPredicted RBP14.63□□□□□ -0.07
SHMT1-205ENST00000395684 PHLPP2Q6ZVD8 1323 aa14.63□□□□□ -0.07
SHMT1-205ENST00000395684 PDE6AP16499 860 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 GPTP24298 496 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 CLCN6P51797 869 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 MDM2Q00987 491 aaPredicted RBP14.62□□□□□ -0.07
SHMT1-205ENST00000395684 HLFQ16534 295 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 ARHGAP29Q52LW3 1261 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 HSP90AA4PQ58FG1 418 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 OLFM4Q6UX06 510 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 NFXL1Q6ZNB6 911 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 SGMS1Q86VZ5 419 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 TMEM139Q8IV31 216 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 DNAJC10Q8IXB1 793 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 TMEM87BQ96K49 555 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 AKAP11Q9UKA4 1901 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 ATRNO75882 1429 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 TCRBV5S4A2TA0A5A2 114 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 GOLGA8AA7E2F4 631 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 TOP1P11387 765 aaKnown RBP14.62□□□□□ -0.07
SHMT1-205ENST00000395684 PHKA1P46020 1223 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 TTF1Q15361 905 aaPredicted RBP14.62□□□□□ -0.07
SHMT1-205ENST00000395684 TMEM67Q5HYA8 995 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 STRBPQ96SI9 672 aaKnown RBP14.62□□□□□ -0.07
SHMT1-205ENST00000395684 PRDM11Q9NQV5 511 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 CNNM1Q9NRU3 951 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 TACC3Q9Y6A5 838 aa14.62□□□□□ -0.07
SHMT1-205ENST00000395684 CCP110O43303 1012 aa14.61□□□□□ -0.07
SHMT1-205ENST00000395684 GUCY1A2P33402 732 aa14.61□□□□□ -0.07
SHMT1-205ENST00000395684 GRIN1Q05586 938 aa14.61□□□□□ -0.07
SHMT1-205ENST00000395684 TRIM29Q14134 588 aa14.61□□□□□ -0.07
SHMT1-205ENST00000395684 KIF6Q6ZMV9 814 aa14.61□□□□□ -0.07
SHMT1-205ENST00000395684 STK11IPQ8N1F8 1099 aa14.61□□□□□ -0.07
SHMT1-205ENST00000395684 SLC26A6Q9BXS9 759 aa14.61□□□□□ -0.07
SHMT1-205ENST00000395684 ZSWIM5Q9P217 1185 aa14.61□□□□□ -0.07
SHMT1-205ENST00000395684 FHOD1Q9Y613 1164 aa14.61□□□□□ -0.07
SHMT1-205ENST00000395684 PAPPAQ13219 1627 aa14.61□□□□□ -0.07
SHMT1-205ENST00000395684 BTBD18B2RXH4 712 aa14.61□□□□□ -0.07
SHMT1-205ENST00000395684 IL2RBP14784 551 aa14.61□□□□□ -0.07
SHMT1-205ENST00000395684 TOB1P50616 345 aaPredicted RBP14.61□□□□□ -0.07
SHMT1-205ENST00000395684 MYH7P12883 1935 aa14.61□□□□□ -0.07
SHMT1-205ENST00000395684 PDE8BO95263 885 aa14.6□□□□□ -0.07
SHMT1-205ENST00000395684 GIGYF2Q6Y7W6 1299 aaKnown RBP14.6□□□□□ -0.07
SHMT1-205ENST00000395684 NLRP10Q86W26 655 aa14.6□□□□□ -0.07
SHMT1-205ENST00000395684 KRI1Q8N9T8 703 aaKnown RBP14.6□□□□□ -0.07
SHMT1-205ENST00000395684 ASAP1Q9ULH1 1129 aa14.6□□□□□ -0.07
SHMT1-205ENST00000395684 ANKRD18BA2A2Z9 1011 aa14.6□□□□□ -0.07
SHMT1-205ENST00000395684 VWA3AA6NCI4 1184 aa14.6□□□□□ -0.07
SHMT1-205ENST00000395684 CTDSPL2Q05D32 466 aa14.6□□□□□ -0.07
SHMT1-205ENST00000395684 BMS1Q14692 1282 aaKnown RBP14.6□□□□□ -0.07
SHMT1-205ENST00000395684 NOSTRINQ8IVI9 506 aa14.6□□□□□ -0.07
SHMT1-205ENST00000395684 EPB41L4AQ9HCS5 686 aaPredicted RBP14.6□□□□□ -0.07
SHMT1-205ENST00000395684 PARP3Q9Y6F1 533 aa14.6□□□□□ -0.07
SHMT1-205ENST00000395684 URI1O94763 535 aaPredicted RBP14.59□□□□□ -0.07
SHMT1-205ENST00000395684 LIFRP42702 1097 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 CTSWP56202 376 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 SSRP1Q08945 709 aaKnown RBP14.59□□□□□ -0.07
SHMT1-205ENST00000395684 CADPS2Q86UW7 1296 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 AIDAQ96BJ3 306 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 SLC12A7Q9Y666 1083 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 CDHR2Q9BYE9 1310 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 IFIT3O14879 490 aaKnown RBP14.59□□□□□ -0.07
SHMT1-205ENST00000395684 MYO1BO43795 1136 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 FMR1Q06787 632 aaKnown RBP eCLIP14.59□□□□□ -0.07
SHMT1-205ENST00000395684 TBX2Q13207 712 aaPredicted RBP14.59□□□□□ -0.07
SHMT1-205ENST00000395684 IFNL3Q8IZI9 196 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 UBXN4Q92575 508 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 TMOD3Q9NYL9 352 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 MAN1B1Q9UKM7 699 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 KCNJ14Q9UNX9 436 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 PPP2R2CQ9Y2T4 447 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 MAP3K15Q6ZN16 1313 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 ARHGAP6O43182 974 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 FMNL1O95466 1100 aaPredicted RBP14.59□□□□□ -0.07
SHMT1-205ENST00000395684 PRR29P0C7W0 189 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 ARID4AP29374 1257 aaPredicted RBP14.59□□□□□ -0.07
SHMT1-205ENST00000395684 FAM177A1Q8N128 213 aaPredicted RBP14.59□□□□□ -0.07
SHMT1-205ENST00000395684 TBC1D2BQ9UPU7 963 aa14.59□□□□□ -0.07
SHMT1-205ENST00000395684 MYO5AQ9Y4I1 1855 aaKnown RBP14.59□□□□□ -0.07
SHMT1-205ENST00000395684 DCCP43146 1447 aa14.58□□□□□ -0.08
SHMT1-205ENST00000395684 STK36Q9NRP7 1315 aa14.58□□□□□ -0.08
SHMT1-205ENST00000395684 PATL2C9JE40 543 aaKnown RBP14.58□□□□□ -0.08
SHMT1-205ENST00000395684 TADA3O75528 432 aa14.58□□□□□ -0.08
SHMT1-205ENST00000395684 MMP1P03956 469 aa14.58□□□□□ -0.08
SHMT1-205ENST00000395684 IFNAR1P17181 557 aa14.58□□□□□ -0.08
SHMT1-205ENST00000395684 ALX1Q15699 326 aa14.58□□□□□ -0.08
SHMT1-205ENST00000395684 ZNF827Q17R98 1081 aa14.58□□□□□ -0.08
SHMT1-205ENST00000395684 FCHSD1Q86WN1 690 aa14.58□□□□□ -0.08
SHMT1-205ENST00000395684 ELOA2Q8IYF1 753 aaPredicted RBP14.58□□□□□ -0.08
SHMT1-205ENST00000395684 HELBQ8NG08 1087 aaPredicted RBP14.58□□□□□ -0.08
SHMT1-205ENST00000395684 MED15Q96RN5 788 aa14.58□□□□□ -0.08
SHMT1-205ENST00000395684 CARD6Q9BX69 1037 aa14.58□□□□□ -0.08
SHMT1-205ENST00000395684 FBXO2Q9UK22 296 aaPredicted RBP14.58□□□□□ -0.08
SHMT1-205ENST00000395684 IRS4O14654 1257 aaPredicted RBP14.58□□□□□ -0.08
SHMT1-205ENST00000395684 POLR2DO15514 142 aaKnown RBP14.58□□□□□ -0.08
SHMT1-205ENST00000395684 ZSCAN12O43309 604 aa14.58□□□□□ -0.08
SHMT1-205ENST00000395684 ZRANB2O95218 330 aaKnown RBP eCLIP14.58□□□□□ -0.08
SHMT1-205ENST00000395684 PNMA6AP0CW24 399 aaPredicted RBP14.58□□□□□ -0.08
SHMT1-205ENST00000395684 ZNF18P17022 549 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms