RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 ELOA2Q8IYF1 753 aaPredicted RBP24.25■■□□□ 1.47
UPF3A-202ENST00000375299 NEK11Q8NG66 645 aa24.25■■□□□ 1.47
UPF3A-202ENST00000375299 SH2B2O14492 632 aaPredicted RBP24.24■■□□□ 1.47
UPF3A-202ENST00000375299 SCARF1Q14162 830 aa24.24■■□□□ 1.47
UPF3A-202ENST00000375299 CCDC191Q8NCU4 936 aa24.24■■□□□ 1.47
UPF3A-202ENST00000375299 RABGGTAQ92696 567 aa24.24■■□□□ 1.47
UPF3A-202ENST00000375299 ARFGAP3Q9NP61 516 aa24.24■■□□□ 1.47
UPF3A-202ENST00000375299 AKAP2Q9Y2D5 859 aa24.24■■□□□ 1.47
UPF3A-202ENST00000375299 ZAP70P43403 619 aa24.24■■□□□ 1.47
UPF3A-202ENST00000375299 SPECC1LQ69YQ0 1117 aa24.24■■□□□ 1.47
UPF3A-202ENST00000375299 SMARCE1Q969G3 411 aa24.24■■□□□ 1.47
UPF3A-202ENST00000375299 NBPF3Q9H094 633 aa24.24■■□□□ 1.47
UPF3A-202ENST00000375299 ABCC12Q96J65 1359 aa24.24■■□□□ 1.47
UPF3A-202ENST00000375299 ST5P78524 1137 aa24.23■■□□□ 1.47
UPF3A-202ENST00000375299 PHKBQ93100 1093 aa24.23■■□□□ 1.47
UPF3A-202ENST00000375299 PARP4Q9UKK3 1724 aaKnown RBP24.23■■□□□ 1.47
UPF3A-202ENST00000375299 RXRAP19793 462 aa24.23■■□□□ 1.47
UPF3A-202ENST00000375299 MDM2Q00987 491 aaPredicted RBP24.23■■□□□ 1.47
UPF3A-202ENST00000375299 HSP90AA4PQ58FG1 418 aa24.23■■□□□ 1.47
UPF3A-202ENST00000375299 CYB5R4Q7L1T6 521 aa24.23■■□□□ 1.47
UPF3A-202ENST00000375299 GOLGA1Q92805 767 aa24.23■■□□□ 1.47
UPF3A-202ENST00000375299 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.23■■□□□ 1.47
UPF3A-202ENST00000375299 PARD6BQ9BYG5 372 aa24.23■■□□□ 1.47
UPF3A-202ENST00000375299 HOOK1Q9UJC3 728 aaKnown RBP24.23■■□□□ 1.47
UPF3A-202ENST00000375299 MAN1B1Q9UKM7 699 aa24.23■■□□□ 1.47
UPF3A-202ENST00000375299 DENND2AQ9ULE3 1009 aa24.23■■□□□ 1.47
UPF3A-202ENST00000375299 MAP3K15Q6ZN16 1313 aa24.22■■□□□ 1.47
UPF3A-202ENST00000375299 FOXN1O15353 648 aa24.22■■□□□ 1.47
UPF3A-202ENST00000375299 ZNF18P17022 549 aa24.22■■□□□ 1.47
UPF3A-202ENST00000375299 CAPN2P17655 700 aa24.22■■□□□ 1.47
UPF3A-202ENST00000375299 ADKP55263 362 aaKnown RBP24.22■■□□□ 1.47
UPF3A-202ENST00000375299 TRIM29Q14134 588 aa24.22■■□□□ 1.47
UPF3A-202ENST00000375299 APOA5Q6Q788 366 aa24.22■■□□□ 1.47
UPF3A-202ENST00000375299 TAOK2Q9UL54 1235 aa24.22■■□□□ 1.47
UPF3A-202ENST00000375299 GPS2Q13227 327 aa24.22■■□□□ 1.47
UPF3A-202ENST00000375299 CCDC34Q96HJ3 373 aa24.22■■□□□ 1.47
UPF3A-202ENST00000375299 NFE2L3Q9Y4A8 694 aa24.22■■□□□ 1.47
UPF3A-202ENST00000375299 STRCP1A6NGW2 1772 aa24.22■■□□□ 1.47
UPF3A-202ENST00000375299 SPATA31A3Q5VYP0 1347 aa24.21■■□□□ 1.47
UPF3A-202ENST00000375299 SLC20A2Q08357 652 aa24.21■■□□□ 1.47
UPF3A-202ENST00000375299 MUM1L1Q5H9M0 696 aa24.21■■□□□ 1.47
UPF3A-202ENST00000375299 TBC1D10CQ8IV04 446 aa24.21■■□□□ 1.47
UPF3A-202ENST00000375299 KRI1Q8N9T8 703 aaKnown RBP24.21■■□□□ 1.47
UPF3A-202ENST00000375299 DHX58Q96C10 678 aa24.21■■□□□ 1.47
UPF3A-202ENST00000375299 ZCCHC17Q9NP64 241 aaKnown RBP24.21■■□□□ 1.47
UPF3A-202ENST00000375299 JAKMIP3Q5VZ66 844 aa24.21■■□□□ 1.47
UPF3A-202ENST00000375299 NKX2-3Q8TAU0 364 aa24.21■■□□□ 1.47
UPF3A-202ENST00000375299 ENOX1Q8TC92 643 aaKnown RBP24.21■■□□□ 1.47
UPF3A-202ENST00000375299 FUT8Q9BYC5 575 aa24.21■■□□□ 1.47
UPF3A-202ENST00000375299 DACH1Q9UI36 760 aa24.21■■□□□ 1.47
UPF3A-202ENST00000375299 IARSP41252 1262 aaKnown RBP24.2■■□□□ 1.46
UPF3A-202ENST00000375299 FMR1Q06787 632 aaKnown RBP eCLIP24.2■■□□□ 1.46
UPF3A-202ENST00000375299 CCDC57Q2TAC2 916 aa24.2■■□□□ 1.46
UPF3A-202ENST00000375299 ZBTB3Q9H5J0 574 aa24.2■■□□□ 1.46
UPF3A-202ENST00000375299 FBXO3Q9UK99 471 aa24.2■■□□□ 1.46
UPF3A-202ENST00000375299 POSTNQ15063 836 aa24.2■■□□□ 1.46
UPF3A-202ENST00000375299 MICU3Q86XE3 530 aa24.2■■□□□ 1.46
UPF3A-202ENST00000375299 MLKLQ8NB16 471 aa24.2■■□□□ 1.46
UPF3A-202ENST00000375299 RAD51AP2Q09MP3 1159 aa24.19■■□□□ 1.46
UPF3A-202ENST00000375299 NTRK3Q16288 839 aa24.19■■□□□ 1.46
UPF3A-202ENST00000375299 TSPYL1Q9H0U9 437 aa24.19■■□□□ 1.46
UPF3A-202ENST00000375299 RAI14Q9P0K7 980 aa24.19■■□□□ 1.46
UPF3A-202ENST00000375299 ZBTB43O43298 467 aa24.18■■□□□ 1.46
UPF3A-202ENST00000375299 RANBP6O60518 1105 aaKnown RBP24.18■■□□□ 1.46
UPF3A-202ENST00000375299 TXLNAP40222 546 aa24.18■■□□□ 1.46
UPF3A-202ENST00000375299 NT5DC1Q5TFE4 455 aa24.18■■□□□ 1.46
UPF3A-202ENST00000375299 PI16Q6UXB8 463 aa24.18■■□□□ 1.46
UPF3A-202ENST00000375299 CADPS2Q86UW7 1296 aa24.18■■□□□ 1.46
UPF3A-202ENST00000375299 CCDC12Q8WUD4 166 aaPredicted RBP24.18■■□□□ 1.46
UPF3A-202ENST00000375299 DESI2Q9BSY9 194 aa24.18■■□□□ 1.46
UPF3A-202ENST00000375299 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.18■■□□□ 1.46
UPF3A-202ENST00000375299 UBN2Q6ZU65 1347 aa24.18■■□□□ 1.46
UPF3A-202ENST00000375299 KARSQ15046 597 aaKnown RBP24.18■■□□□ 1.46
UPF3A-202ENST00000375299 TMEM87BQ96K49 555 aa24.18■■□□□ 1.46
UPF3A-202ENST00000375299 SENP2Q9HC62 589 aa24.18■■□□□ 1.46
UPF3A-202ENST00000375299 CCDC151A5D8V7 595 aa24.17■■□□□ 1.46
UPF3A-202ENST00000375299 SPECC1Q5M775 1068 aa24.17■■□□□ 1.46
UPF3A-202ENST00000375299 STK11IPQ8N1F8 1099 aa24.17■■□□□ 1.46
UPF3A-202ENST00000375299 GOLGA8AA7E2F4 631 aa24.17■■□□□ 1.46
UPF3A-202ENST00000375299 PRR29P0C7W0 189 aa24.17■■□□□ 1.46
UPF3A-202ENST00000375299 SARSP49591 514 aaKnown RBP24.17■■□□□ 1.46
UPF3A-202ENST00000375299 MORC3Q14149 939 aa24.17■■□□□ 1.46
UPF3A-202ENST00000375299 NUTM2AQ8IVF1 878 aaPredicted RBP24.17■■□□□ 1.46
UPF3A-202ENST00000375299 TRMT44Q8IYL2 757 aaKnown RBP24.17■■□□□ 1.46
UPF3A-202ENST00000375299 TRERF1Q96PN7 1200 aa24.17■■□□□ 1.46
UPF3A-202ENST00000375299 MRPL44Q9H9J2 332 aaKnown RBP24.17■■□□□ 1.46
UPF3A-202ENST00000375299 STK36Q9NRP7 1315 aa24.17■■□□□ 1.46
UPF3A-202ENST00000375299 ATRNO75882 1429 aa24.17■■□□□ 1.46
UPF3A-202ENST00000375299 AKAP11Q9UKA4 1901 aa24.16■■□□□ 1.46
UPF3A-202ENST00000375299 ADD2P35612 726 aa24.16■■□□□ 1.46
UPF3A-202ENST00000375299 BRD3Q15059 726 aa24.16■■□□□ 1.46
UPF3A-202ENST00000375299 LONRF2Q1L5Z9 754 aa24.16■■□□□ 1.46
UPF3A-202ENST00000375299 B4E1Z4 1266 aa24.16■■□□□ 1.46
UPF3A-202ENST00000375299 CCDC175P0C221 793 aa24.16■■□□□ 1.46
UPF3A-202ENST00000375299 TRIML1Q8N9V2 468 aa24.16■■□□□ 1.46
UPF3A-202ENST00000375299 UBR2Q8IWV8 1755 aa24.16■■□□□ 1.46
UPF3A-202ENST00000375299 A1BGP04217 495 aa24.15■■□□□ 1.46
UPF3A-202ENST00000375299 NR1I3Q14994 352 aa24.15■■□□□ 1.46
UPF3A-202ENST00000375299 NFXL1Q6ZNB6 911 aa24.15■■□□□ 1.46
UPF3A-202ENST00000375299 NOSTRINQ8IVI9 506 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 226.9 ms