RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 MTFR1Q15390 333 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 NBPF6Q5VWK0 638 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 USPL1Q5W0Q7 1092 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 SLC51AQ86UW1 340 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 HELQQ8TDG4 1101 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 ARHGAP45Q92619 1136 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 SCARF2Q96GP6 870 aaPredicted RBP3.01□□□□□ -1.93
VPS54-202ENST00000354504 HSH2DQ96JZ2 352 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 NBPF4Q96M43 638 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 ORAI2Q96SN7 254 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 TERF2IPQ9NYB0 399 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 A6NJY4 79 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 DIAPH1O60610 1272 aaKnown RBP3.01□□□□□ -1.93
VPS54-202ENST00000354504 TRIP4Q15650 581 aaPredicted RBP3.01□□□□□ -1.93
VPS54-202ENST00000354504 INTS3Q68E01 1043 aaKnown RBP3.01□□□□□ -1.93
VPS54-202ENST00000354504 SV2AQ7L0J3 742 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 THEMISQ8N1K5 641 aaPredicted RBP3.01□□□□□ -1.93
VPS54-202ENST00000354504 KAZALD1Q96I82 304 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 INSM2Q96T92 566 aaPredicted RBP3.01□□□□□ -1.93
VPS54-202ENST00000354504 PAPPA2Q9BXP8 1791 aa3.01□□□□□ -1.93
VPS54-202ENST00000354504 BRCA2P51587 3418 aa3□□□□□ -1.93
VPS54-202ENST00000354504 ZIC2O95409 532 aaPredicted RBP3□□□□□ -1.93
VPS54-202ENST00000354504 PTGIRP43119 386 aa3□□□□□ -1.93
VPS54-202ENST00000354504 PHKA2P46019 1235 aa3□□□□□ -1.93
VPS54-202ENST00000354504 SMTNP53814 917 aa3□□□□□ -1.93
VPS54-202ENST00000354504 TRIM22Q8IYM9 498 aa3□□□□□ -1.93
VPS54-202ENST00000354504 POLR3GLQ9BT43 218 aa3□□□□□ -1.93
VPS54-202ENST00000354504 EFCC1Q9HA90 598 aa3□□□□□ -1.93
VPS54-202ENST00000354504 UTYO14607 1347 aa3□□□□□ -1.93
VPS54-202ENST00000354504 VAMP1P23763 118 aa3□□□□□ -1.93
VPS54-202ENST00000354504 FKBP4Q02790 459 aaKnown RBP eCLIP3□□□□□ -1.93
VPS54-202ENST00000354504 DCTN1Q14203 1278 aa3□□□□□ -1.93
VPS54-202ENST00000354504 LINC00528Q8N1L1 170 aa3□□□□□ -1.93
VPS54-202ENST00000354504 TMEM151AQ8N4L1 468 aa3□□□□□ -1.93
VPS54-202ENST00000354504 TMEM57Q8N5G2 664 aa3□□□□□ -1.93
VPS54-202ENST00000354504 IP6K1Q92551 441 aa3□□□□□ -1.93
VPS54-202ENST00000354504 XAGE2Q96GT9 111 aa3□□□□□ -1.93
VPS54-202ENST00000354504 GRIP2Q9C0E4 1043 aa3□□□□□ -1.93
VPS54-202ENST00000354504 PARP14Q460N5 1801 aa3□□□□□ -1.93
VPS54-202ENST00000354504 MAP3K5Q99683 1374 aa3□□□□□ -1.93
VPS54-202ENST00000354504 SPATA31A3Q5VYP0 1347 aa3□□□□□ -1.93
VPS54-202ENST00000354504 SOBPA7XYQ1 873 aa3□□□□□ -1.93
VPS54-202ENST00000354504 GSPT1P15170 499 aaKnown RBP3□□□□□ -1.93
VPS54-202ENST00000354504 IGFBP4P22692 258 aa3□□□□□ -1.93
VPS54-202ENST00000354504 TNNT2P45379 298 aaPredicted RBP3□□□□□ -1.93
VPS54-202ENST00000354504 LAMC2Q13753 1193 aa3□□□□□ -1.93
VPS54-202ENST00000354504 G2E3Q7L622 706 aa3□□□□□ -1.93
VPS54-202ENST00000354504 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3□□□□□ -1.933e-7■■■□□ 15.7
VPS54-202ENST00000354504 C11orf16Q9NQ32 467 aa3□□□□□ -1.93
VPS54-202ENST00000354504 ENAMQ9NRM1 1142 aa3□□□□□ -1.93
VPS54-202ENST00000354504 NOB1Q9ULX3 412 aaKnown RBP3□□□□□ -1.93
VPS54-202ENST00000354504 MYH1P12882 1939 aa3□□□□□ -1.93
VPS54-202ENST00000354504 CCDC88AQ3V6T2 1871 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 ARFGEF1Q9Y6D6 1849 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 PPP1R12BO60237 982 aaPredicted RBP2.99□□□□□ -1.93
VPS54-202ENST00000354504 ADH1AP07327 375 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 CTSHP09668 335 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 MAP2K3P46734 347 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 CENPCQ03188 943 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 DGKZQ13574 1117 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 DSC3Q14574 896 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 TLR1Q15399 786 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 FAM182BQ5T319 152 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 ZNF385CQ66K41 422 aaPredicted RBP2.99□□□□□ -1.93
VPS54-202ENST00000354504 CENPQQ7L2Z9 268 aaPredicted RBP2.99□□□□□ -1.93
VPS54-202ENST00000354504 ALDH16A1Q8IZ83 802 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 ASB16Q96NS5 453 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 IL25Q9H293 177 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 POLIQ9UNA4 740 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 LOC285556D6RIA3 1793 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 PHF20L1A8MW92 1017 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 F6X3S4 739 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 HMOX1P09601 288 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 CASP7P55210 303 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 RIPK4P57078 832 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 NUCB1Q02818 461 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 ATF7IPQ6VMQ6 1270 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 ZFP42Q96MM3 310 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 DYRK1BQ9Y463 629 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 MYH6P13533 1939 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 KIF16BQ96L93 1317 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 TREHO43280 583 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 KCNQ3O43525 872 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 PTCD1O75127 700 aaKnown RBP2.99□□□□□ -1.93
VPS54-202ENST00000354504 ATP4AP20648 1035 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 TSNAXIP1Q2TAA8 658 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 C16orf46Q6P387 395 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 PMFBP1Q8TBY8 1022 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 ESYT1Q9BSJ8 1104 aa2.99□□□□□ -1.93
VPS54-202ENST00000354504 PRAMEF22A3QJZ6 481 aa2.98□□□□□ -1.93
VPS54-202ENST00000354504 MEN1O00255 615 aa2.98□□□□□ -1.93
VPS54-202ENST00000354504 HTATSF1O43719 755 aaKnown RBP2.98□□□□□ -1.93
VPS54-202ENST00000354504 TNNI2P48788 182 aa2.98□□□□□ -1.93
VPS54-202ENST00000354504 WDR4P57081 412 aaKnown RBP2.98□□□□□ -1.93
VPS54-202ENST00000354504 COL9A3Q14050 684 aaPredicted RBP2.98□□□□□ -1.93
VPS54-202ENST00000354504 MRPL58Q14197 206 aaKnown RBP2.98□□□□□ -1.93
VPS54-202ENST00000354504 ADAMTSL4Q6UY14 1074 aa2.98□□□□□ -1.93
VPS54-202ENST00000354504 BRINP3Q76B58 766 aa2.98□□□□□ -1.93
VPS54-202ENST00000354504 HDGFL2Q7Z4V5 671 aaPredicted RBP2.98□□□□□ -1.93
VPS54-202ENST00000354504 DDX17Q92841 729 aaKnown RBP2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms