RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 SNRKQ9NRH2 765 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 GNAQP50148 359 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 ASIC1P78348 528 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 APOBRQ0VD83 1088 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 WTAPQ15007 396 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 LONRF2Q1L5Z9 754 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 RGS22Q8NE09 1264 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 TSPYL2Q9H2G4 693 aaPredicted RBP11.67□□□□□ -0.54
VCL-201ENST00000211998 BICC1Q9H694 974 aaKnown RBP11.67□□□□□ -0.54
VCL-201ENST00000211998 NMIQ13287 307 aaPredicted RBP11.67□□□□□ -0.54
VCL-201ENST00000211998 KRT71Q3SY84 523 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 CCDC62Q6P9F0 684 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 MRPL50Q8N5N7 158 aaKnown RBP11.67□□□□□ -0.54
VCL-201ENST00000211998 RABGGTAQ92696 567 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 PSMB7Q99436 277 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 ZRANB1Q9UGI0 708 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 CLCN6P51797 869 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 KLHL7Q8IXQ5 586 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 SLF1Q9BQI6 1058 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 TRIM31Q9BZY9 425 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 MRFAP1Q9Y605 127 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 GPATCH8Q9UKJ3 1502 aaKnown RBP11.67□□□□□ -0.54
VCL-201ENST00000211998 PPIP5K1Q6PFW1 1433 aa11.67□□□□□ -0.54
VCL-201ENST00000211998 ESR2Q92731 530 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 RPGRIP1Q96KN7 1286 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 DDX41Q9UJV9 622 aaKnown RBP11.66□□□□□ -0.54
VCL-201ENST00000211998 PPP2R2CQ9Y2T4 447 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 BICDL2A1A5D9 508 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 KIF1CO43896 1103 aaKnown RBP11.66□□□□□ -0.54
VCL-201ENST00000211998 IL15P40933 162 aaPredicted RBP11.66□□□□□ -0.54
VCL-201ENST00000211998 FBXO18Q8NFZ0 1043 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 GSDMBQ8TAX9 411 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 FAF1Q9UNN5 650 aaPredicted RBP11.66□□□□□ -0.54
VCL-201ENST00000211998 FAM83GA6ND36 823 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 ACTN4O43707 911 aaKnown RBP11.66□□□□□ -0.54
VCL-201ENST00000211998 MTMR3Q13615 1198 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 FBXO38Q6PIJ6 1188 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 FERMT2Q96AC1 680 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 NRBP1Q9UHY1 535 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 CTNND2Q9UQB3 1225 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 SAR1BQ9Y6B6 198 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 PLCH2O75038 1416 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 URB2Q14146 1524 aaKnown RBP11.66□□□□□ -0.54
VCL-201ENST00000211998 RASSF2P50749 326 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 ADKP55263 362 aaKnown RBP11.66□□□□□ -0.54
VCL-201ENST00000211998 PHLDB3Q6NSJ2 640 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 RAPGEF6Q8TEU7 1601 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 TRIM75PA6NK02 468 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 TBCAO75347 108 aaKnown RBP11.66□□□□□ -0.54
VCL-201ENST00000211998 GUCY2FP51841 1108 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 SESN3P58005 492 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 TMCO4Q5TGY1 634 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 MIER3Q7Z3K6 550 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 RASEFQ8IZ41 740 aa11.66□□□□□ -0.54
VCL-201ENST00000211998 BIVM-ERCC5R4GMW8 1640 aa11.65□□□□□ -0.54
VCL-201ENST00000211998 ANKRD65E5RJM6 399 aa11.65□□□□□ -0.54
VCL-201ENST00000211998 RNF40O75150 1001 aa11.65□□□□□ -0.54
VCL-201ENST00000211998 POLE2P56282 527 aa11.65□□□□□ -0.54
VCL-201ENST00000211998 PKP1Q13835 747 aa11.65□□□□□ -0.54
VCL-201ENST00000211998 CROCCP2Q86T23 111 aa11.65□□□□□ -0.54
VCL-201ENST00000211998 HDAC9Q9UKV0 1011 aa11.65□□□□□ -0.54
VCL-201ENST00000211998 MTUS1Q9ULD2 1270 aa11.65□□□□□ -0.54
VCL-201ENST00000211998 KSR2Q6VAB6 950 aa11.65□□□□□ -0.54
VCL-201ENST00000211998 PPP1R13BQ96KQ4 1090 aa11.65□□□□□ -0.54
VCL-201ENST00000211998 DESI2Q9BSY9 194 aa11.65□□□□□ -0.54
VCL-201ENST00000211998 CHPF2Q9P2E5 772 aa11.65□□□□□ -0.54
VCL-201ENST00000211998 USP37Q86T82 979 aa11.65□□□□□ -0.54
VCL-201ENST00000211998 MORC4Q8TE76 937 aa11.65□□□□□ -0.54
VCL-201ENST00000211998 ABTB1Q969K4 478 aaPredicted RBP11.65□□□□□ -0.54
VCL-201ENST00000211998 PLCB1Q9NQ66 1216 aa11.65□□□□□ -0.54
VCL-201ENST00000211998 EIF2AK4Q9P2K8 1649 aaKnown RBP11.65□□□□□ -0.54
VCL-201ENST00000211998 A2MP01023 1474 aa11.65□□□□□ -0.54
VCL-201ENST00000211998 SYCP3Q8IZU3 236 aa11.65□□□□□ -0.55
VCL-201ENST00000211998 XAGE3Q8WTP9 111 aa11.65□□□□□ -0.55
VCL-201ENST00000211998 NOX5Q96PH1 765 aa11.65□□□□□ -0.55
VCL-201ENST00000211998 SETDB2Q96T68 719 aa11.65□□□□□ -0.55
VCL-201ENST00000211998 ZNF219Q9P2Y4 722 aaPredicted RBP11.65□□□□□ -0.55
VCL-201ENST00000211998 GRM8O00222 908 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 TSPY3P0CV98 308 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 TSPY8P0CW00 308 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 ATP8B2P98198 1209 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 ZBTB17Q13105 803 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 MCMDC2Q4G0Z9 681 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 CEP85Q6P2H3 762 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 TRIM6Q9C030 488 aaPredicted RBP11.64□□□□□ -0.55
VCL-201ENST00000211998 NYXQ9GZU5 481 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 PSDA5PKW4 1024 aaPredicted RBP11.64□□□□□ -0.55
VCL-201ENST00000211998 PNMA6AP0CW24 399 aaPredicted RBP11.64□□□□□ -0.55
VCL-201ENST00000211998 CTNNA1P35221 906 aaKnown RBP11.64□□□□□ -0.55
VCL-201ENST00000211998 GJC1P36383 396 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 NCBP1Q09161 790 aaKnown RBP11.64□□□□□ -0.55
VCL-201ENST00000211998 TBC1D8BQ0IIM8 1120 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 CHRNA2Q15822 529 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 CFAP221Q4G0U5 840 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 CFAP157Q5JU67 520 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 TADA2BQ86TJ2 420 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 MGARPQ8TDB4 240 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 VAT1LQ9HCJ6 419 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 VCX3AQ9NNX9 186 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 RIMS2Q9UQ26 1411 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms