RNA–Protein interactions for RNA: snR40

snR40, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR40, Length 97 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR40snR40 VMA1P17255 1071 aaKnown RBP2.06□□□□□ -2.08
snR40snR40 RIM101P33400 625 aa2.06□□□□□ -2.08
snR40snR40 GCR2Q01722 534 aa2.06□□□□□ -2.08
snR40snR40 BNI4P53858 892 aa2.02□□□□□ -2.09
snR40snR40 YDL176WQ12027 708 aa2.02□□□□□ -2.09
snR40snR40 MET22P32179 357 aa2.01□□□□□ -2.09
snR40snR40 PTC2P39966 464 aaKnown RBP2.01□□□□□ -2.09
snR40snR40 ENV9Q08651 330 aa2.01□□□□□ -2.09
snR40snR40 AI2P03876 854 aa1.99□□□□□ -2.09
snR40snR40 GYP5Q12344 894 aa1.99□□□□□ -2.09
snR40snR40 DRS1P32892 752 aaKnown RBP1.98□□□□□ -2.09
snR40snR40 DCW1P36091 449 aa1.98□□□□□ -2.09
snR40snR40 HAP5Q02516 242 aa1.98□□□□□ -2.09
snR40snR40 DBP1P24784 617 aaKnown RBP1.95□□□□□ -2.1
snR40snR40 MID1P41821 548 aa1.95□□□□□ -2.1
snR40snR40 LSB3P43603 459 aaKnown RBP1.94□□□□□ -2.1
snR40snR40 SDH2P21801 266 aa1.93□□□□□ -2.1
snR40snR40 OXP1P28273 1286 aa1.93□□□□□ -2.1
snR40snR40 PTP3P40048 928 aa1.93□□□□□ -2.1
snR40snR40 YDR444WQ04093 687 aa1.93□□□□□ -2.1
snR40snR40 YMR1P47147 688 aaKnown RBP RIP-Chip data1.92□□□□□ -2.1not detected
snR40snR40 YFR006WP43590 535 aa1.91□□□□□ -2.1
snR40snR40 YEL077CQ3E7X8 1277 aa1.9□□□□□ -2.11
snR40snR40 AIR1P40507 360 aaKnown RBP1.89□□□□□ -2.11
snR40snR40 YPR015CQ12531 247 aa1.89□□□□□ -2.11
snR40snR40 TRK2P28584 889 aa1.88□□□□□ -2.11
snR40snR40 STS1P38637 319 aa1.87□□□□□ -2.11
snR40snR40 RSM7P47150 247 aa1.87□□□□□ -2.11
snR40snR40 LCB5Q06147 687 aaKnown RBP1.87□□□□□ -2.11
snR40snR40 GYP1Q08484 637 aa1.87□□□□□ -2.11
snR40snR40 YIL055CP40523 627 aaKnown RBP1.86□□□□□ -2.11
snR40snR40 VPS29P38759 282 aa1.84□□□□□ -2.11
snR40snR40 ICP55P40051 511 aa1.83□□□□□ -2.12
snR40snR40 PUS1Q12211 544 aaKnown RBP1.83□□□□□ -2.12
snR40snR40 MRM1P25270 412 aa1.82□□□□□ -2.12
snR40snR40 SAS4Q04003 481 aa1.82□□□□□ -2.12
snR40snR40 RAM1P22007 431 aa1.81□□□□□ -2.12
snR40snR40 CLA4P48562 842 aa1.8□□□□□ -2.12
snR40snR40 MPC54Q08550 464 aa1.77□□□□□ -2.13
snR40snR40 MRF1P30775 413 aaPredicted RBP1.76□□□□□ -2.13
snR40snR40 YGR035CP53222 116 aa1.76□□□□□ -2.13
snR40snR40 CDC4P07834 779 aa1.75□□□□□ -2.13
snR40snR40 NMA111P53920 997 aa1.75□□□□□ -2.13
snR40snR40 NST1P53935 1240 aa1.74□□□□□ -2.13
snR40snR40 CAF120P53836 1060 aa1.73□□□□□ -2.13
snR40snR40 ACO2P39533 789 aa1.72□□□□□ -2.13
snR40snR40 PSD2P53037 1138 aaKnown RBP1.72□□□□□ -2.13
snR40snR40 PHM7Q12252 991 aa1.72□□□□□ -2.13
snR40snR40 RRD1P40454 393 aaKnown RBP1.7□□□□□ -2.14
snR40snR40 HPF1Q05164 967 aa1.7□□□□□ -2.14
snR40snR40 YPR204WQ08995 1032 aa1.7□□□□□ -2.14
snR40snR40 GRE2Q12068 342 aaKnown RBP1.7□□□□□ -2.14
snR40snR40 AI4P03878 556 aa1.69□□□□□ -2.14
snR40snR40 CST6P40535 587 aa1.69□□□□□ -2.14
snR40snR40 CCT8P47079 568 aaKnown RBP1.69□□□□□ -2.14
snR40snR40 MPH3P0CE00 602 aa1.68□□□□□ -2.14
snR40snR40 GLT1Q12680 2145 aaKnown RBP1.68□□□□□ -2.14
snR40snR40 RTG3P38165 486 aa1.67□□□□□ -2.14
snR40snR40 SBP1P10080 294 aaKnown RBP1.66□□□□□ -2.14
snR40snR40 GIS1Q03833 894 aa1.66□□□□□ -2.14
snR40snR40 ERG12P07277 443 aa1.65□□□□□ -2.15
snR40snR40 ILV3P39522 585 aaKnown RBP1.65□□□□□ -2.15
snR40snR40 LAM6Q08001 693 aa1.65□□□□□ -2.15
snR40snR40 DPL1Q05567 589 aa1.64□□□□□ -2.15
snR40snR40 GUT1P32190 709 aa1.63□□□□□ -2.15
snR40snR40 MDJ1P35191 511 aa1.62□□□□□ -2.15
snR40snR40 SOL3P38858 249 aa1.62□□□□□ -2.15
snR40snR40 IRC24P40580 263 aa1.61□□□□□ -2.15
snR40snR40 ISU2Q12056 156 aa1.61□□□□□ -2.15
snR40snR40 ATH1P48016 1211 aa1.6□□□□□ -2.15
snR40snR40 HED1Q03937 162 aa1.59□□□□□ -2.15
snR40snR40 PDR1P12383 1068 aa1.58□□□□□ -2.16
snR40snR40 AFT1P22149 690 aa1.58□□□□□ -2.16
snR40snR40 ASH1P34233 588 aa1.58□□□□□ -2.16
snR40snR40 YIR007WP40566 764 aa1.58□□□□□ -2.16
snR40snR40 YAH1Q12184 172 aaKnown RBP1.58□□□□□ -2.16
snR40snR40 YPL034WQ03083 165 aa1.57□□□□□ -2.16
snR40snR40 FRK1Q03002 865 aaPredicted RBP1.56□□□□□ -2.16
snR40snR40 SLI15P38283 698 aa1.55□□□□□ -2.16
snR40snR40 PRT1P06103 763 aaKnown RBP1.54□□□□□ -2.16
snR40snR40 YJR115WP47152 169 aa1.54□□□□□ -2.16
snR40snR40 NSG2P53898 299 aa1.54□□□□□ -2.16
snR40snR40 HST3P53687 447 aa1.53□□□□□ -2.16
snR40snR40 BUD20Q08004 166 aaPredicted RBP1.53□□□□□ -2.16
snR40snR40 MET32Q12041 191 aa1.53□□□□□ -2.16
snR40snR40 DPH6Q12429 685 aa1.53□□□□□ -2.16
snR40snR40 YLR271WQ06152 274 aa1.52□□□□□ -2.17
snR40snR40 OPT2Q06593 877 aa1.52□□□□□ -2.17
snR40snR40 RCR1P38212 213 aa1.51□□□□□ -2.17
snR40snR40 BDP1P46678 594 aa1.51□□□□□ -2.17
snR40snR40 PTC3P34221 468 aaKnown RBP1.49□□□□□ -2.17
snR40snR40 YFL066CP43538 392 aa1.49□□□□□ -2.17
snR40snR40 GLY1P37303 387 aaKnown RBP1.48□□□□□ -2.17
snR40snR40 YLR346CQ06139 101 aa1.48□□□□□ -2.17
snR40snR40 YPR053CQ6Q5F3 151 aa1.47□□□□□ -2.17
snR40snR40 SKN7P38889 622 aa1.46□□□□□ -2.18
snR40snR40 THI72Q08579 599 aa1.45□□□□□ -2.18
snR40snR40 TY1A-BLQ12266 440 aa1.45□□□□□ -2.18
snR40snR40 SCW11P53189 542 aa1.44□□□□□ -2.18
snR40snR40 MAC1P35192 417 aa1.43□□□□□ -2.18
Retrieved 100 of 5,963 RNA–protein pairs in 20.9 ms