RNA–Protein interactions for RNA: YIL123W

SIM1, Transcript of Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p), yeastyeast

Gene SIM1, Length 1,431 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIM1YIL123W TY1B-GR1Q12141 1755 aa16.6■□□□□ 0.25
SIM1YIL123W TY1B-BLQ12490 1755 aa16.6■□□□□ 0.25
SIM1YIL123W GEA1P47102 1408 aaPredicted RBP16.58■□□□□ 0.24
SIM1YIL123W RPA190P10964 1664 aaKnown RBP16.57■□□□□ 0.24
SIM1YIL123W IKI3Q06706 1349 aaKnown RBP16.56■□□□□ 0.24
SIM1YIL123W IFH1P39520 1085 aa16.55■□□□□ 0.24
SIM1YIL123W NTE1Q04958 1679 aa16.45■□□□□ 0.22
SIM1YIL123W GEA2P39993 1459 aaKnown RBP16.44■□□□□ 0.22
SIM1YIL123W NUP170P38181 1502 aa16.43■□□□□ 0.22
SIM1YIL123W RPO21P04050 1733 aaKnown RBP16.43■□□□□ 0.22
SIM1YIL123W RTT106P40161 455 aa16.43■□□□□ 0.22
SIM1YIL123W NUP159P40477 1460 aa16.41■□□□□ 0.22
SIM1YIL123W TY3B-GQ99315 1547 aa16.38■□□□□ 0.21
SIM1YIL123W MET5P47169 1442 aa16.37■□□□□ 0.21
SIM1YIL123W IRC20Q06554 1556 aa16.36■□□□□ 0.21
SIM1YIL123W CAT8P39113 1433 aa16.32■□□□□ 0.2
SIM1YIL123W VPS15P22219 1454 aa16.32■□□□□ 0.2
SIM1YIL123W SSM4P40318 1319 aa16.3■□□□□ 0.2
SIM1YIL123W MET10P39692 1035 aa16.26■□□□□ 0.19
SIM1YIL123W PDR12Q02785 1511 aa16.25■□□□□ 0.19
SIM1YIL123W YBT1P32386 1661 aa16.24■□□□□ 0.19
SIM1YIL123W YRF1-1P0CX20 1796 aa16.2■□□□□ 0.18
SIM1YIL123W YRF1-5P0CX21 1796 aa16.2■□□□□ 0.18
SIM1YIL123W YRF1-8P0CX22 1796 aa16.2■□□□□ 0.18
SIM1YIL123W PDR10P51533 1564 aa16.16■□□□□ 0.18
SIM1YIL123W GDB1Q06625 1536 aa16.14■□□□□ 0.17
SIM1YIL123W SPO14P36126 1683 aa16.14■□□□□ 0.17
SIM1YIL123W NUP157P40064 1391 aaKnown RBP16.12■□□□□ 0.17
SIM1YIL123W ARO1P08566 1588 aaKnown RBP16.08■□□□□ 0.16
SIM1YIL123W SRB8P25648 1427 aa16.08■□□□□ 0.16
SIM1YIL123W CKB1P43639 278 aa16.02■□□□□ 0.15
SIM1YIL123W LTE1P07866 1435 aa15.98■□□□□ 0.15
SIM1YIL123W IQG1Q12280 1495 aa15.96■□□□□ 0.15
SIM1YIL123W YSP2Q06681 1438 aa15.96■□□□□ 0.15
SIM1YIL123W MMS1Q06211 1407 aa15.92■□□□□ 0.14
SIM1YIL123W BUD3P25558 1636 aa15.91■□□□□ 0.14
SIM1YIL123W BUD21Q08492 214 aaPredicted RBP15.86■□□□□ 0.13
SIM1YIL123W BNR1P40450 1375 aa15.78■□□□□ 0.12
SIM1YIL123W SEC7P11075 2009 aaKnown RBP15.78■□□□□ 0.12
SIM1YIL123W GCN2P15442 1659 aa15.77■□□□□ 0.12
SIM1YIL123W DRS2P39524 1355 aa15.76■□□□□ 0.11
SIM1YIL123W TRM3Q07527 1436 aa15.75■□□□□ 0.11
SIM1YIL123W DOP1Q03921 1698 aa15.67■□□□□ 0.1
SIM1YIL123W ITT1Q04638 464 aa15.63■□□□□ 0.09
SIM1YIL123W BNI1P41832 1953 aa15.61■□□□□ 0.09
SIM1YIL123W CHC1P22137 1653 aaKnown RBP15.6■□□□□ 0.09
SIM1YIL123W NOP7P53261 605 aaKnown RBP15.57■□□□□ 0.08
SIM1YIL123W YOR093CQ12275 1648 aa15.56■□□□□ 0.08
SIM1YIL123W PDR5P33302 1511 aaKnown RBP15.55■□□□□ 0.08
SIM1YIL123W PAF1P38351 445 aa15.54■□□□□ 0.08
SIM1YIL123W POL5P39985 1022 aaKnown RBP15.5■□□□□ 0.07
SIM1YIL123W BFR2Q06631 534 aaKnown RBP15.48■□□□□ 0.07
SIM1YIL123W VMR1P38735 1592 aa15.45■□□□□ 0.06
SIM1YIL123W RAV1P47104 1357 aa15.44■□□□□ 0.06
SIM1YIL123W NUP188P52593 1655 aaKnown RBP15.44■□□□□ 0.06
SIM1YIL123W PDR11P40550 1411 aa15.43■□□□□ 0.06
SIM1YIL123W DNF2Q12675 1612 aa15.4■□□□□ 0.06
SIM1YIL123W RTC1Q08281 1341 aa15.39■□□□□ 0.05
SIM1YIL123W IML1P47170 1584 aa15.39■□□□□ 0.05
SIM1YIL123W URN1Q06525 465 aaKnown RBP15.37■□□□□ 0.05
SIM1YIL123W IPL1P38991 367 aa15.32■□□□□ 0.04
SIM1YIL123W YAP3P38749 330 aa15.26■□□□□ 0.03
SIM1YIL123W TYS1P36421 394 aaKnown RBP15.26■□□□□ 0.03
SIM1YIL123W TY3B-IQ7LHG5 1498 aaKnown RBP15.25■□□□□ 0.03
SIM1YIL123W ESL2P36168 1195 aa15.2■□□□□ 0.02
SIM1YIL123W TAF5P38129 798 aa15.18■□□□□ 0.02
SIM1YIL123W SEC3P33332 1336 aaKnown RBP15.18■□□□□ 0.02
SIM1YIL123W HAP1P0CE41 1502 aa15.17■□□□□ 0.02
SIM1YIL123W NUP192P47054 1683 aa15.16■□□□□ 0.02
SIM1YIL123W MHP1P43638 1398 aa15.15■□□□□ 0.02
SIM1YIL123W ORC1P54784 914 aaPredicted RBP15.12■□□□□ 0.01
SIM1YIL123W KIP3P53086 805 aaKnown RBP15.09■□□□□ 0.01
SIM1YIL123W YLR419WQ06698 1435 aaKnown RBP15.08■□□□□ 0.01
SIM1YIL123W NSR1P27476 414 aaKnown RBP RIP-Chip data15.06■□□□□ 0not detected
SIM1YIL123W SPT7P35177 1332 aa15.06■□□□□ 0
SIM1YIL123W ALD4P46367 519 aaKnown RBP15.06■□□□□ 0
SIM1YIL123W SCT1P32784 759 aa15.04■□□□□ -0
SIM1YIL123W ENP1P38333 483 aaKnown RBP15.04■□□□□ -0
SIM1YIL123W BCK1Q01389 1478 aa15.03■□□□□ -0
SIM1YIL123W DNF3Q12674 1656 aa15.02■□□□□ -0
SIM1YIL123W RAD9P14737 1309 aa15.02□□□□□ -0.01
SIM1YIL123W SPE2P21182 396 aa15□□□□□ -0.01
SIM1YIL123W TAF8Q03750 510 aa14.97□□□□□ -0.01
SIM1YIL123W ABP1P15891 592 aaKnown RBP14.96□□□□□ -0.01
SIM1YIL123W PDS5Q04264 1277 aa14.96□□□□□ -0.01
SIM1YIL123W CAB1Q04430 367 aa14.95□□□□□ -0.02
SIM1YIL123W NAP1P25293 417 aaKnown RBP14.92□□□□□ -0.02
SIM1YIL123W MAK10Q02197 733 aa14.92□□□□□ -0.02
SIM1YIL123W PSD2P53037 1138 aaKnown RBP14.92□□□□□ -0.02
SIM1YIL123W MRX12P47084 519 aa14.88□□□□□ -0.03
SIM1YIL123W KRE5P22023 1365 aa14.86□□□□□ -0.03
SIM1YIL123W CFT1Q06632 1357 aaKnown RBP14.85□□□□□ -0.03
SIM1YIL123W CHZ1P40019 153 aaPredicted RBP14.83□□□□□ -0.03
SIM1YIL123W LEU3P08638 886 aa14.81□□□□□ -0.04
SIM1YIL123W RIA1P53893 1110 aa14.81□□□□□ -0.04
SIM1YIL123W FKH1P40466 484 aa14.78□□□□□ -0.04
SIM1YIL123W RTG3P38165 486 aa14.75□□□□□ -0.05
SIM1YIL123W NST1P53935 1240 aa14.75□□□□□ -0.05
SIM1YIL123W PSK1P31374 1356 aa14.71□□□□□ -0.05
SIM1YIL123W TY1B-NL2Q99337 1749 aaKnown RBP14.7□□□□□ -0.06
Retrieved 100 of 5,963 RNA–protein pairs in 13 ms