RNA–Protein interactions for RNA: YHL006C

SHU1, Transcript of Component of Shu complex (aka PCSS complex), yeastyeast

Gene SHU1, Length 453 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHU1YHL006C VTH2P40890 1549 aa21.87■■□□□ 1.09
SHU1YHL006C GEA2P39993 1459 aaKnown RBP21.87■■□□□ 1.09
SHU1YHL006C RPO21P04050 1733 aaKnown RBP21.78■■□□□ 1.08
SHU1YHL006C ITT1Q04638 464 aa21.77■■□□□ 1.08
SHU1YHL006C VPS15P22219 1454 aa21.75■■□□□ 1.07
SHU1YHL006C MYO4P32492 1471 aa21.71■■□□□ 1.07
SHU1YHL006C YTA7P40340 1379 aa21.65■■□□□ 1.06
SHU1YHL006C SNQ2P32568 1501 aaKnown RBP21.6■■□□□ 1.05
SHU1YHL006C MIF2P35201 549 aa21.58■■□□□ 1.05
SHU1YHL006C DRS2P39524 1355 aa21.55■■□□□ 1.04
SHU1YHL006C MMS1Q06211 1407 aa21.54■■□□□ 1.04
SHU1YHL006C SNT2P53127 1403 aa21.51■■□□□ 1.03
SHU1YHL006C STH1P32597 1359 aa21.4■■□□□ 1.02
SHU1YHL006C ABP1P15891 592 aaKnown RBP21.37■■□□□ 1.01
SHU1YHL006C SPO14P36126 1683 aa21.37■■□□□ 1.01
SHU1YHL006C NUP170P38181 1502 aa21.35■■□□□ 1.01
SHU1YHL006C MET10P39692 1035 aa21.32■■□□□ 1
SHU1YHL006C ULS1Q08562 1619 aa21.31■■□□□ 1
SHU1YHL006C MLP2P40457 1679 aa21.28■■□□□ 1
SHU1YHL006C IRC20Q06554 1556 aa21.27■■□□□ 1
SHU1YHL006C PDR12Q02785 1511 aa21.26■□□□□ 0.99
SHU1YHL006C DNF2Q12675 1612 aa21.23■□□□□ 0.99
SHU1YHL006C RTT106P40161 455 aa21.22■□□□□ 0.99
SHU1YHL006C GDB1Q06625 1536 aa21.16■□□□□ 0.98
SHU1YHL006C PDR15Q04182 1529 aaKnown RBP21.15■□□□□ 0.98
SHU1YHL006C DOP1Q03921 1698 aa21.12■□□□□ 0.97
SHU1YHL006C SAS10Q12136 610 aaPredicted RBP21.07■□□□□ 0.96
SHU1YHL006C IQG1Q12280 1495 aa21.06■□□□□ 0.96
SHU1YHL006C NUP157P40064 1391 aaKnown RBP21.05■□□□□ 0.96
SHU1YHL006C PDR10P51533 1564 aa20.98■□□□□ 0.95
SHU1YHL006C TRM3Q07527 1436 aa20.95■□□□□ 0.95
SHU1YHL006C YFR006WP43590 535 aa20.91■□□□□ 0.94
SHU1YHL006C BUD3P25558 1636 aa20.9■□□□□ 0.94
SHU1YHL006C TAF7Q05021 590 aa20.85■□□□□ 0.93
SHU1YHL006C IFH1P39520 1085 aa20.83■□□□□ 0.93
SHU1YHL006C ARO1P08566 1588 aaKnown RBP20.8■□□□□ 0.92
SHU1YHL006C CHC1P22137 1653 aaKnown RBP20.77■□□□□ 0.92
SHU1YHL006C YBT1P32386 1661 aa20.73■□□□□ 0.91
SHU1YHL006C TY3B-GQ99315 1547 aa20.73■□□□□ 0.91
SHU1YHL006C GEA1P47102 1408 aaPredicted RBP20.73■□□□□ 0.91
SHU1YHL006C YOR093CQ12275 1648 aa20.7■□□□□ 0.9
SHU1YHL006C CAT8P39113 1433 aa20.68■□□□□ 0.9
SHU1YHL006C SEC7P11075 2009 aaKnown RBP20.6■□□□□ 0.89
SHU1YHL006C YSP2Q06681 1438 aa20.53■□□□□ 0.88
SHU1YHL006C DNF3Q12674 1656 aa20.48■□□□□ 0.87
SHU1YHL006C CKB1P43639 278 aa20.48■□□□□ 0.87
SHU1YHL006C BNR1P40450 1375 aa20.42■□□□□ 0.86
SHU1YHL006C YAP3P38749 330 aa20.31■□□□□ 0.84
SHU1YHL006C SRB8P25648 1427 aa20.2■□□□□ 0.82
SHU1YHL006C MAK10Q02197 733 aa20.1■□□□□ 0.81
SHU1YHL006C URN1Q06525 465 aaKnown RBP20.07■□□□□ 0.8
SHU1YHL006C USO1P25386 1790 aa20.03■□□□□ 0.8
SHU1YHL006C NUP188P52593 1655 aaKnown RBP19.99■□□□□ 0.79
SHU1YHL006C BUD21Q08492 214 aaPredicted RBP19.98■□□□□ 0.79
SHU1YHL006C IML1P47170 1584 aa19.95■□□□□ 0.78
SHU1YHL006C VMR1P38735 1592 aa19.92■□□□□ 0.78
SHU1YHL006C IPL1P38991 367 aa19.92■□□□□ 0.78
SHU1YHL006C HAP1P0CE41 1502 aa19.86■□□□□ 0.77
SHU1YHL006C TYS1P36421 394 aaKnown RBP19.85■□□□□ 0.77
SHU1YHL006C IKI3Q06706 1349 aaKnown RBP19.77■□□□□ 0.76
SHU1YHL006C PDR5P33302 1511 aaKnown RBP19.74■□□□□ 0.75
SHU1YHL006C TY1B-NL2Q99337 1749 aaKnown RBP19.73■□□□□ 0.75
SHU1YHL006C SSM4P40318 1319 aa19.67■□□□□ 0.74
SHU1YHL006C THI12P42883 340 aa19.64■□□□□ 0.73
SHU1YHL006C THI5P43534 340 aa19.64■□□□□ 0.73
SHU1YHL006C THI11P47183 340 aa19.64■□□□□ 0.73
SHU1YHL006C THI13Q07748 340 aa19.64■□□□□ 0.73
SHU1YHL006C YMR196WQ04336 1088 aa19.62■□□□□ 0.73
SHU1YHL006C PDR11P40550 1411 aa19.56■□□□□ 0.72
SHU1YHL006C GCN2P15442 1659 aa19.56■□□□□ 0.72
SHU1YHL006C KRE5P22023 1365 aa19.35■□□□□ 0.69
SHU1YHL006C CFT1Q06632 1357 aaKnown RBP19.31■□□□□ 0.68
SHU1YHL006C RIA1P53893 1110 aa19.27■□□□□ 0.68
SHU1YHL006C BCK1Q01389 1478 aa19.24■□□□□ 0.67
SHU1YHL006C MRX12P47084 519 aa19.24■□□□□ 0.67
SHU1YHL006C RAV1P47104 1357 aa19.21■□□□□ 0.67
SHU1YHL006C NUP192P47054 1683 aa19.18■□□□□ 0.66
SHU1YHL006C YNR029CP53729 429 aaKnown RBP19.17■□□□□ 0.66
SHU1YHL006C PAF1P38351 445 aa19.14■□□□□ 0.65
SHU1YHL006C YAH1Q12184 172 aaKnown RBP19.13■□□□□ 0.65
SHU1YHL006C RAD9P14737 1309 aa19.1■□□□□ 0.65
SHU1YHL006C PTP3P40048 928 aa19.1■□□□□ 0.65
SHU1YHL006C CAB1Q04430 367 aa19.09■□□□□ 0.65
SHU1YHL006C RTC1Q08281 1341 aa19.07■□□□□ 0.64
SHU1YHL006C APP1P53933 587 aa19.06■□□□□ 0.64
SHU1YHL006C BFR2Q06631 534 aaKnown RBP19.06■□□□□ 0.64
SHU1YHL006C ALD4P46367 519 aaKnown RBP19.04■□□□□ 0.64
SHU1YHL006C TY3B-IQ7LHG5 1498 aaKnown RBP18.99■□□□□ 0.63
SHU1YHL006C GLN1P32288 370 aaKnown RBP18.92■□□□□ 0.62
SHU1YHL006C NOP7P53261 605 aaKnown RBP18.92■□□□□ 0.62
SHU1YHL006C YIL055CP40523 627 aaKnown RBP18.9■□□□□ 0.62
SHU1YHL006C REB1P21538 810 aa18.87■□□□□ 0.61
SHU1YHL006C ENT1Q12518 454 aa18.81■□□□□ 0.6
SHU1YHL006C RRP5Q05022 1729 aaKnown RBP18.77■□□□□ 0.59
SHU1YHL006C TAF8Q03750 510 aa18.75■□□□□ 0.59
SHU1YHL006C TAF5P38129 798 aa18.74■□□□□ 0.59
SHU1YHL006C ENV9Q08651 330 aa18.73■□□□□ 0.59
SHU1YHL006C ESL2P36168 1195 aa18.72■□□□□ 0.59
SHU1YHL006C NAP1P25293 417 aaKnown RBP18.7■□□□□ 0.58
SHU1YHL006C CPS1P27614 576 aa18.7■□□□□ 0.58
Retrieved 100 of 5,963 RNA–protein pairs in 12 ms