RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 CSRNP3Q8WYN3 585 aa7.79□□□□□ -1.16
VIM-210ENST00000637053 SPDYE4A6NLX3 237 aa7.77□□□□□ -1.17
VIM-210ENST00000637053 NPM1P06748 294 aaKnown RBP eCLIP7.75□□□□□ -1.17
VIM-210ENST00000637053 C7P10643 843 aa7.75□□□□□ -1.17
VIM-210ENST00000637053 SLC39A7Q92504 469 aa7.74□□□□□ -1.17
VIM-210ENST00000637053 PCDH10Q9P2E7 1040 aa7.74□□□□□ -1.17
VIM-210ENST00000637053 POTEFA5A3E0 1075 aa7.71□□□□□ -1.18
VIM-210ENST00000637053 ATN1P54259 1190 aaPredicted RBP7.71□□□□□ -1.18
VIM-210ENST00000637053 FAM163AQ96GL9 167 aaPredicted RBP7.71□□□□□ -1.18
VIM-210ENST00000637053 MAMSTRQ6ZN01 415 aa7.69□□□□□ -1.18
VIM-210ENST00000637053 TSPYL2Q9H2G4 693 aaPredicted RBP7.67□□□□□ -1.18
VIM-210ENST00000637053 TRPC6Q9Y210 931 aa7.67□□□□□ -1.18
VIM-210ENST00000637053 CCDC61Q9Y6R9 512 aa7.67□□□□□ -1.18
VIM-210ENST00000637053 KIF12Q96FN5 646 aa7.65□□□□□ -1.18
VIM-210ENST00000637053 SCUBE2Q9NQ36 999 aa7.64□□□□□ -1.19
VIM-210ENST00000637053 BMP2KQ9NSY1 1161 aaPredicted RBP7.64□□□□□ -1.19
VIM-210ENST00000637053 COLQQ9Y215 455 aaPredicted RBP7.61□□□□□ -1.19
VIM-210ENST00000637053 MAP3K13O43283 966 aa7.58□□□□□ -1.2
VIM-210ENST00000637053 PROM2Q8N271 834 aa7.57□□□□□ -1.2
VIM-210ENST00000637053 TIE1P35590 1138 aa7.56□□□□□ -1.2
VIM-210ENST00000637053 CDAN1Q8IWY9 1227 aa7.56□□□□□ -1.2
VIM-210ENST00000637053 TTLL13PA6NNM8 815 aa7.54□□□□□ -1.2
VIM-210ENST00000637053 RASEFQ8IZ41 740 aa7.54□□□□□ -1.2
VIM-210ENST00000637053 SEC24BO95487 1268 aa7.5□□□□□ -1.21
VIM-210ENST00000637053 ST18O60284 1047 aa7.49□□□□□ -1.21
VIM-210ENST00000637053 TRIM35Q9UPQ4 493 aa7.48□□□□□ -1.21
VIM-210ENST00000637053 EHMT2Q96KQ7 1210 aa7.46□□□□□ -1.22
VIM-210ENST00000637053 IER5LQ5T953 404 aa7.45□□□□□ -1.22
VIM-210ENST00000637053 SLAIN1Q8ND83 568 aa7.45□□□□□ -1.22
VIM-210ENST00000637053 MIER1Q8N108 512 aa7.43□□□□□ -1.22
VIM-210ENST00000637053 PCDHB13Q9Y5F0 798 aa7.43□□□□□ -1.22
VIM-210ENST00000637053 MMRN1Q13201 1228 aa7.41□□□□□ -1.22
VIM-210ENST00000637053 IFNL1Q8IU54 200 aa7.41□□□□□ -1.22
VIM-210ENST00000637053 SGIP1Q9BQI5 828 aa7.41□□□□□ -1.22
VIM-210ENST00000637053 SPNS2Q8IVW8 549 aa7.4□□□□□ -1.22
VIM-210ENST00000637053 NUBP1P53384 320 aa7.38□□□□□ -1.23
VIM-210ENST00000637053 IRX5P78411 483 aaPredicted RBP7.37□□□□□ -1.23
VIM-210ENST00000637053 TMEM106CQ9BVX2 250 aa7.37□□□□□ -1.23
VIM-210ENST00000637053 PLEKHG5O94827 1062 aa7.36□□□□□ -1.23
VIM-210ENST00000637053 PLCG2P16885 1265 aa7.35□□□□□ -1.23
VIM-210ENST00000637053 MARVELD3Q96A59 401 aa7.34□□□□□ -1.23
VIM-210ENST00000637053 PLCD3Q8N3E9 789 aa7.32□□□□□ -1.24
VIM-210ENST00000637053 TMEM121BQ9BXQ6 578 aaPredicted RBP7.32□□□□□ -1.24
VIM-210ENST00000637053 OCEL1Q9H607 264 aa7.3□□□□□ -1.24
VIM-210ENST00000637053 POTEB3A0JP26 581 aa7.27□□□□□ -1.25
VIM-210ENST00000637053 POTEBQ6S5H4 581 aa7.27□□□□□ -1.25
VIM-210ENST00000637053 FAM212AQ96EL1 285 aa7.26□□□□□ -1.25
VIM-210ENST00000637053 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.26□□□□□ -1.25
VIM-210ENST00000637053 SNPHO15079 494 aa7.25□□□□□ -1.25
VIM-210ENST00000637053 KRTAP3-3Q9BYR6 98 aa7.24□□□□□ -1.25
VIM-210ENST00000637053 KRTAP3-2Q9BYR7 98 aa7.24□□□□□ -1.25
VIM-210ENST00000637053 PCDHB8Q9UN66 801 aa7.24□□□□□ -1.25
VIM-210ENST00000637053 PDCD7Q8N8D1 485 aaKnown RBP7.23□□□□□ -1.25
VIM-210ENST00000637053 ZBTB47Q9UFB7 747 aaPredicted RBP7.23□□□□□ -1.25
VIM-210ENST00000637053 PYGBP11216 843 aa7.22□□□□□ -1.25
VIM-210ENST00000637053 EMP3P54852 163 aa7.2□□□□□ -1.26
VIM-210ENST00000637053 HS3ST6Q96QI5 342 aa7.19□□□□□ -1.26
VIM-210ENST00000637053 DCAF8Q5TAQ9 597 aa7.18□□□□□ -1.26
VIM-210ENST00000637053 FAM205CA6NFA0 338 aa7.17□□□□□ -1.26
VIM-210ENST00000637053 C3orf67Q6ZVT6 689 aa7.14□□□□□ -1.27
VIM-210ENST00000637053 L3MBTL3Q96JM7 780 aaPredicted RBP7.11□□□□□ -1.27
VIM-210ENST00000637053 HOXB3P14651 431 aaPredicted RBP7.1□□□□□ -1.27
VIM-210ENST00000637053 DPY19L2Q6NUT2 758 aa7.1□□□□□ -1.27
VIM-210ENST00000637053 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.1□□□□□ -1.27
VIM-210ENST00000637053 MKRN3Q13064 507 aaKnown RBP7.09□□□□□ -1.27
VIM-210ENST00000637053 ILDR1Q86SU0 546 aaPredicted RBP7.09□□□□□ -1.27
VIM-210ENST00000637053 GOLGA2Q08379 1002 aa7.06□□□□□ -1.28
VIM-210ENST00000637053 PSEN1P49768 467 aa7.05□□□□□ -1.28
VIM-210ENST00000637053 ZNF467Q7Z7K2 595 aaPredicted RBP7.05□□□□□ -1.28
VIM-210ENST00000637053 FKBP8Q14318 412 aa7.04□□□□□ -1.28
VIM-210ENST00000637053 HOXB1P14653 301 aaPredicted RBP7.03□□□□□ -1.28
VIM-210ENST00000637053 CHRM1P11229 460 aaPredicted RBP7.02□□□□□ -1.29
VIM-210ENST00000637053 GSE1Q14687 1217 aa7□□□□□ -1.29
VIM-210ENST00000637053 RNF166Q96A37 237 aaPredicted RBP7□□□□□ -1.29
VIM-210ENST00000637053 BOLA1Q9Y3E2 137 aa7□□□□□ -1.29
VIM-210ENST00000637053 ERBB3P21860 1342 aa6.99□□□□□ -1.29
VIM-210ENST00000637053 ZNF710Q8N1W2 664 aa6.97□□□□□ -1.29
VIM-210ENST00000637053 CABP2Q9NPB3 220 aa6.97□□□□□ -1.29
VIM-210ENST00000637053 PDAP1Q13442 181 aaKnown RBP6.96□□□□□ -1.3
VIM-210ENST00000637053 VARS2Q5ST30 1063 aaKnown RBP6.96□□□□□ -1.3
VIM-210ENST00000637053 KLHL34Q8N239 644 aa6.95□□□□□ -1.3
VIM-210ENST00000637053 MYT1LQ9UL68 1186 aa6.95□□□□□ -1.3
VIM-210ENST00000637053 DOK7Q18PE1 504 aa6.94□□□□□ -1.3
VIM-210ENST00000637053 TMEM92Q6UXU6 159 aa6.93□□□□□ -1.3
VIM-210ENST00000637053 VASPP50552 380 aaPredicted RBP6.92□□□□□ -1.3
VIM-210ENST00000637053 FBXO3Q9UK99 471 aa6.92□□□□□ -1.3
VIM-210ENST00000637053 G3V3G9 751 aa6.91□□□□□ -1.3
VIM-210ENST00000637053 ZNF687Q8N1G0 1237 aa6.91□□□□□ -1.3
VIM-210ENST00000637053 GPR153Q6NV75 609 aa6.89□□□□□ -1.31
VIM-210ENST00000637053 EFCAB3Q8N7B9 438 aa6.87□□□□□ -1.31
VIM-210ENST00000637053 RIMBP2O15034 1052 aa6.86□□□□□ -1.31
VIM-210ENST00000637053 MICALL2Q8IY33 904 aa6.85□□□□□ -1.31
VIM-210ENST00000637053 ZSWIM6Q9HCJ5 1215 aa6.85□□□□□ -1.31
VIM-210ENST00000637053 ANKRD13DQ6ZTN6 518 aa6.83□□□□□ -1.32
VIM-210ENST00000637053 ARSIQ5FYB1 569 aa6.82□□□□□ -1.32
VIM-210ENST00000637053 KHSRPQ92945 711 aaKnown RBP eCLIP6.82□□□□□ -1.32
VIM-210ENST00000637053 CIZ1Q9ULV3 898 aaPredicted RBP6.82□□□□□ -1.32
VIM-210ENST00000637053 PTGER2P43116 358 aa6.81□□□□□ -1.32
VIM-210ENST00000637053 IFNLR1Q8IU57 520 aaPredicted RBP6.81□□□□□ -1.32
VIM-210ENST00000637053 MS4A4AQ96JQ5 239 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 138.1 ms