RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 RIMBP3Q9UFD9 1639 aa31.6■■■□□ 2.65
SQSTM1-216ENST00000626660 KIAA0586Q9BVV6 1533 aa31.52■■■□□ 2.64
SQSTM1-216ENST00000626660 KIF21BO75037 1637 aa31.5■■■□□ 2.63
SQSTM1-216ENST00000626660 ARHGEF11O15085 1522 aa31.47■■■□□ 2.63
SQSTM1-216ENST00000626660 SHROOM2Q13796 1616 aa31.44■■■□□ 2.62
SQSTM1-216ENST00000626660 CTTNBP2Q8WZ74 1663 aa31.44■■■□□ 2.62
SQSTM1-216ENST00000626660 IQGAP2Q13576 1575 aa31.42■■■□□ 2.62
SQSTM1-216ENST00000626660 CYB5RLQ6IPT4 315 aa31.41■■■□□ 2.62
SQSTM1-216ENST00000626660 JPH4Q96JJ6 628 aa31.4■■■□□ 2.62
SQSTM1-216ENST00000626660 GOLGA3Q08378 1498 aa31.35■■■□□ 2.61
SQSTM1-216ENST00000626660 PRG4Q92954 1404 aaPredicted RBP31.33■■■□□ 2.61
SQSTM1-216ENST00000626660 TRHP20396 242 aaPredicted RBP31.29■■■□□ 2.6
SQSTM1-216ENST00000626660 EHMT2Q96KQ7 1210 aa31.29■■■□□ 2.6
SQSTM1-216ENST00000626660 ERCC6L2Q5T890 1561 aa31.26■■■□□ 2.59
SQSTM1-216ENST00000626660 UBTFP17480 764 aaKnown RBP31.25■■■□□ 2.59
SQSTM1-216ENST00000626660 UGGT2Q9NYU1 1516 aa31.24■■■□□ 2.59
SQSTM1-216ENST00000626660 CARMIL2Q6F5E8 1435 aa31.22■■■□□ 2.59
SQSTM1-216ENST00000626660 ARAP1Q96P48 1450 aa31.21■■■□□ 2.59
SQSTM1-216ENST00000626660 DISP1Q96F81 1524 aa31.12■■■□□ 2.57
SQSTM1-216ENST00000626660 KIAA0556O60303 1618 aa31.1■■■□□ 2.57
SQSTM1-216ENST00000626660 TNIKQ9UKE5 1360 aa31.05■■■□□ 2.56
SQSTM1-216ENST00000626660 RANGAP1P46060 587 aaPredicted RBP31.04■■■□□ 2.56
SQSTM1-216ENST00000626660 PTPRGP23470 1445 aa31.01■■■□□ 2.55
SQSTM1-216ENST00000626660 SAMD9Q5K651 1589 aa31■■■□□ 2.55
SQSTM1-216ENST00000626660 TTBK1Q5TCY1 1321 aaPredicted RBP30.98■■■□□ 2.55
SQSTM1-216ENST00000626660 EFCAB5A4FU69 1503 aa30.97■■■□□ 2.55
SQSTM1-216ENST00000626660 P3H3Q8IVL6 736 aa30.93■■■□□ 2.54
SQSTM1-216ENST00000626660 LOC105371045A0A1W2PR82 267 aa30.9■■■□□ 2.54
SQSTM1-216ENST00000626660 FHOD3Q2V2M9 1422 aa30.83■■■□□ 2.53
SQSTM1-216ENST00000626660 ARHGAP35Q9NRY4 1499 aa30.82■■■□□ 2.52
SQSTM1-216ENST00000626660 UACAQ9BZF9 1416 aa30.81■■■□□ 2.52
SQSTM1-216ENST00000626660 ADCY10Q96PN6 1610 aa30.79■■■□□ 2.52
SQSTM1-216ENST00000626660 CLIP1P30622 1438 aa30.79■■■□□ 2.52
SQSTM1-216ENST00000626660 UHRF1BP1LA0JNW5 1464 aa30.76■■■□□ 2.51
SQSTM1-216ENST00000626660 ABCC2Q92887 1545 aa30.75■■■□□ 2.51
SQSTM1-216ENST00000626660 NPM1P06748 294 aaKnown RBP eCLIP30.73■■■□□ 2.51
SQSTM1-216ENST00000626660 AEBP2Q6ZN18 517 aaPredicted RBP30.73■■■□□ 2.51
SQSTM1-216ENST00000626660 PLB1Q6P1J6 1458 aa30.73■■■□□ 2.51
SQSTM1-216ENST00000626660 CEP162Q5TB80 1403 aa30.73■■■□□ 2.51
SQSTM1-216ENST00000626660 ABCA8O94911 1581 aa30.72■■■□□ 2.51
SQSTM1-216ENST00000626660 FMN1Q68DA7 1419 aa30.67■■■□□ 2.5
SQSTM1-216ENST00000626660 RAPGEF6Q8TEU7 1601 aa30.66■■■□□ 2.5
SQSTM1-216ENST00000626660 KDM5BQ9UGL1 1544 aa30.59■■■□□ 2.49
SQSTM1-216ENST00000626660 ZCCHC11Q5TAX3 1644 aaKnown RBP30.56■■■□□ 2.48
SQSTM1-216ENST00000626660 MAPKBP1O60336 1514 aa30.54■■■□□ 2.48
SQSTM1-216ENST00000626660 HECW1Q76N89 1606 aa30.51■■■□□ 2.47
SQSTM1-216ENST00000626660 NUP153P49790 1475 aaKnown RBP30.5■■■□□ 2.47
SQSTM1-216ENST00000626660 ARID3CA6NKF2 412 aa30.49■■■□□ 2.47
SQSTM1-216ENST00000626660 ATP1B4Q9UN42 357 aaPredicted RBP30.49■■■□□ 2.47
SQSTM1-216ENST00000626660 ATP10BO94823 1461 aa30.46■■■□□ 2.47
SQSTM1-216ENST00000626660 PCF11O94913 1555 aaKnown RBP30.45■■■□□ 2.47
SQSTM1-216ENST00000626660 CASKIN1Q8WXD9 1431 aa30.45■■■□□ 2.46
SQSTM1-216ENST00000626660 ASXL2Q76L83 1435 aa30.44■■■□□ 2.46
SQSTM1-216ENST00000626660 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.43■■■□□ 2.46
SQSTM1-216ENST00000626660 HNRNPUL2Q1KMD3 747 aaKnown RBP30.43■■■□□ 2.46
SQSTM1-216ENST00000626660 FYCO1Q9BQS8 1478 aa30.42■■■□□ 2.46
SQSTM1-216ENST00000626660 EPRSP07814 1512 aaKnown RBP30.37■■■□□ 2.45
SQSTM1-216ENST00000626660 WDR7Q9Y4E6 1490 aa30.36■■■□□ 2.45
SQSTM1-216ENST00000626660 CDK13Q14004 1512 aaKnown RBP30.35■■■□□ 2.45
SQSTM1-216ENST00000626660 ABCC10Q5T3U5 1492 aa30.34■■■□□ 2.45
SQSTM1-216ENST00000626660 VPS8Q8N3P4 1428 aa30.34■■■□□ 2.45
SQSTM1-216ENST00000626660 CCDC18Q5T9S5 1454 aa30.32■■■□□ 2.44
SQSTM1-216ENST00000626660 DIP2BQ9P265 1576 aa30.32■■■□□ 2.44
SQSTM1-216ENST00000626660 LRRIQ1Q96JM4 1722 aa30.3■■■□□ 2.44
SQSTM1-216ENST00000626660 KIF13AQ9H1H9 1805 aa30.3■■■□□ 2.44
SQSTM1-216ENST00000626660 PLEKHD1A6NEE1 506 aa30.28■■■□□ 2.44
SQSTM1-216ENST00000626660 FAM69CQ0P6D2 419 aa30.28■■■□□ 2.44
SQSTM1-216ENST00000626660 CDK11AQ9UQ88 783 aaPredicted RBP30.27■■■□□ 2.44
SQSTM1-216ENST00000626660 KCNH8Q96L42 1107 aa30.24■■■□□ 2.43
SQSTM1-216ENST00000626660 GLI2P10070 1586 aa30.22■■■□□ 2.43
SQSTM1-216ENST00000626660 TROQ12816 1431 aaPredicted RBP30.13■■■□□ 2.41
SQSTM1-216ENST00000626660 CFAP43Q8NDM7 1665 aa30.11■■■□□ 2.41
SQSTM1-216ENST00000626660 TSPOAP1O95153 1857 aa30.1■■■□□ 2.41
SQSTM1-216ENST00000626660 MAP3K4Q9Y6R4 1608 aa30.09■■■□□ 2.41
SQSTM1-216ENST00000626660 ABCA9Q8IUA7 1624 aa30.08■■■□□ 2.41
SQSTM1-216ENST00000626660 APLP2Q06481 763 aa30.07■■■□□ 2.4
SQSTM1-216ENST00000626660 KIF14Q15058 1648 aa30.07■■■□□ 2.4
SQSTM1-216ENST00000626660 TIAM1Q13009 1591 aa30.07■■■□□ 2.4
SQSTM1-216ENST00000626660 MTUS2Q5JR59 1369 aa30.05■■■□□ 2.4
SQSTM1-216ENST00000626660 MAGI3Q5TCQ9 1506 aa30.05■■■□□ 2.4
SQSTM1-216ENST00000626660 CD109Q6YHK3 1445 aa30.05■■■□□ 2.4
SQSTM1-216ENST00000626660 MAP3K1Q13233 1512 aa30.02■■■□□ 2.4
SQSTM1-216ENST00000626660 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.01■■■□□ 2.397e-7■■■■□ 24.5
SQSTM1-216ENST00000626660 EHBP1L1Q8N3D4 1523 aa30■■■□□ 2.39
SQSTM1-216ENST00000626660 TTC37Q6PGP7 1564 aa29.98■■■□□ 2.39
SQSTM1-216ENST00000626660 TEX14Q8IWB6 1497 aa29.97■■■□□ 2.39
SQSTM1-216ENST00000626660 PPRC1Q5VV67 1664 aaKnown RBP29.97■■■□□ 2.39
SQSTM1-216ENST00000626660 LRRC9Q6ZRR7 1453 aa29.92■■■□□ 2.38
SQSTM1-216ENST00000626660 MYO5CQ9NQX4 1742 aa29.91■■■□□ 2.38
SQSTM1-216ENST00000626660 SUPT6HQ7KZ85 1726 aaKnown RBP29.88■■■□□ 2.37
SQSTM1-216ENST00000626660 KANK4Q5T7N3 995 aaPredicted RBP29.84■■■□□ 2.37
SQSTM1-216ENST00000626660 PLCH2O75038 1416 aa29.84■■■□□ 2.37
SQSTM1-216ENST00000626660 CFAP74Q9C0B2 1584 aa29.82■■■□□ 2.36
SQSTM1-216ENST00000626660 ARAP3Q8WWN8 1544 aa29.81■■■□□ 2.36
SQSTM1-216ENST00000626660 CCNB3Q8WWL7 1395 aa29.81■■■□□ 2.36
SQSTM1-216ENST00000626660 NEO1Q92859 1461 aa29.8■■■□□ 2.36
SQSTM1-216ENST00000626660 PREX2Q70Z35 1606 aa29.8■■■□□ 2.36
SQSTM1-216ENST00000626660 FANCAO15360 1455 aa29.8■■■□□ 2.36
SQSTM1-216ENST00000626660 NCOA2Q15596 1464 aa29.8■■■□□ 2.36
SQSTM1-216ENST00000626660 CDC42BPAQ5VT25 1732 aa29.79■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms