RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 EIF5BO60841 1220 aaKnown RBP18.43■□□□□ 0.54
LINC00538-201ENST00000626109 EEA1Q15075 1411 aa18.4■□□□□ 0.54
LINC00538-201ENST00000626109 RUSC2Q8N2Y8 1516 aa18.4■□□□□ 0.54
LINC00538-201ENST00000626109 GRIN2BQ13224 1484 aa18.39■□□□□ 0.53
LINC00538-201ENST00000626109 PBRM1Q86U86 1689 aa18.37■□□□□ 0.53
LINC00538-201ENST00000626109 PLCB2Q00722 1185 aa18.36■□□□□ 0.53
LINC00538-201ENST00000626109 GTF3C3Q9Y5Q9 886 aa18.36■□□□□ 0.53
LINC00538-201ENST00000626109 ERICH3Q5RHP9 1530 aa18.36■□□□□ 0.53
LINC00538-201ENST00000626109 FAM9AQ8IZU1 332 aaPredicted RBP18.34■□□□□ 0.53
LINC00538-201ENST00000626109 IGF1RP08069 1367 aa18.31■□□□□ 0.52
LINC00538-201ENST00000626109 SNAPC4Q5SXM2 1469 aa18.31■□□□□ 0.52
LINC00538-201ENST00000626109 MAGI1Q96QZ7 1491 aaPredicted RBP18.3■□□□□ 0.52
LINC00538-201ENST00000626109 CUL7Q14999 1698 aa18.28■□□□□ 0.52
LINC00538-201ENST00000626109 ADAMTS12P58397 1594 aa18.26■□□□□ 0.51
LINC00538-201ENST00000626109 FHAD1B1AJZ9 1412 aa18.25■□□□□ 0.51
LINC00538-201ENST00000626109 HAP1P54257 671 aaPredicted RBP18.24■□□□□ 0.51
LINC00538-201ENST00000626109 CARMIL1Q5VZK9 1371 aa18.24■□□□□ 0.51
LINC00538-201ENST00000626109 SYNJ2O15056 1496 aa18.22■□□□□ 0.51
LINC00538-201ENST00000626109 PRXQ9BXM0 1461 aa18.2■□□□□ 0.5
LINC00538-201ENST00000626109 CHMP7Q8WUX9 453 aaPredicted RBP18.19■□□□□ 0.5
LINC00538-201ENST00000626109 RAPGEF2Q9Y4G8 1499 aa18.18■□□□□ 0.5
LINC00538-201ENST00000626109 FBLN2P98095 1184 aa18.17■□□□□ 0.5
LINC00538-201ENST00000626109 KIF21BO75037 1637 aa18.16■□□□□ 0.5
LINC00538-201ENST00000626109 GRIN2AQ12879 1464 aa18.15■□□□□ 0.5
LINC00538-201ENST00000626109 CHD1O14646 1710 aa18.14■□□□□ 0.49
LINC00538-201ENST00000626109 GOLGA3Q08378 1498 aa18.1■□□□□ 0.49
LINC00538-201ENST00000626109 NPM2Q86SE8 214 aaKnown RBP18.07■□□□□ 0.48
LINC00538-201ENST00000626109 NUP160Q12769 1436 aa18.05■□□□□ 0.48
LINC00538-201ENST00000626109 HRCP23327 699 aa18.04■□□□□ 0.48
LINC00538-201ENST00000626109 CEP170Q5SW79 1584 aa18.03■□□□□ 0.48
LINC00538-201ENST00000626109 UBTFP17480 764 aaKnown RBP18.02■□□□□ 0.48
LINC00538-201ENST00000626109 OSCARQ8IYS5 282 aa18.02■□□□□ 0.47
LINC00538-201ENST00000626109 CTTNBP2Q8WZ74 1663 aa17.98■□□□□ 0.47
LINC00538-201ENST00000626109 KIAA0586Q9BVV6 1533 aa17.98■□□□□ 0.47
LINC00538-201ENST00000626109 PCGF6Q9BYE7 350 aa17.97■□□□□ 0.47
LINC00538-201ENST00000626109 LOC105371045A0A1W2PR82 267 aa17.96■□□□□ 0.47
LINC00538-201ENST00000626109 CLASP1Q7Z460 1538 aa17.95■□□□□ 0.46
LINC00538-201ENST00000626109 IQGAP2Q13576 1575 aa17.95■□□□□ 0.46
LINC00538-201ENST00000626109 TNIKQ9UKE5 1360 aa17.93■□□□□ 0.46
LINC00538-201ENST00000626109 TMEM132AQ24JP5 1023 aa17.92■□□□□ 0.46
LINC00538-201ENST00000626109 C14orf37Q86TY3 774 aa17.88■□□□□ 0.45
LINC00538-201ENST00000626109 JPH4Q96JJ6 628 aa17.86■□□□□ 0.45
LINC00538-201ENST00000626109 SHROOM2Q13796 1616 aa17.85■□□□□ 0.45
LINC00538-201ENST00000626109 ZBTB22O15209 634 aa17.85■□□□□ 0.45
LINC00538-201ENST00000626109 UGGT2Q9NYU1 1516 aa17.85■□□□□ 0.45
LINC00538-201ENST00000626109 PRG4Q92954 1404 aaPredicted RBP17.81■□□□□ 0.44
LINC00538-201ENST00000626109 PLEKHG5O94827 1062 aa17.8■□□□□ 0.44
LINC00538-201ENST00000626109 CARMIL2Q6F5E8 1435 aa17.8■□□□□ 0.44
LINC00538-201ENST00000626109 CEP162Q5TB80 1403 aa17.79■□□□□ 0.44
LINC00538-201ENST00000626109 EFCAB5A4FU69 1503 aa17.79■□□□□ 0.44
LINC00538-201ENST00000626109 CLIP1P30622 1438 aa17.78■□□□□ 0.44
LINC00538-201ENST00000626109 TRIM26Q12899 539 aaPredicted RBP17.78■□□□□ 0.44
LINC00538-201ENST00000626109 SAMD9Q5K651 1589 aa17.77■□□□□ 0.44
LINC00538-201ENST00000626109 DISP1Q96F81 1524 aa17.76■□□□□ 0.43
LINC00538-201ENST00000626109 KIAA0556O60303 1618 aa17.76■□□□□ 0.43
LINC00538-201ENST00000626109 ARHGAP35Q9NRY4 1499 aa17.74■□□□□ 0.43
LINC00538-201ENST00000626109 ERCC6L2Q5T890 1561 aa17.73■□□□□ 0.43
LINC00538-201ENST00000626109 ARHGEF11O15085 1522 aa17.72■□□□□ 0.43
LINC00538-201ENST00000626109 P3H3Q8IVL6 736 aa17.72■□□□□ 0.43
LINC00538-201ENST00000626109 VSIG10Q8N0Z9 540 aa17.71■□□□□ 0.43
LINC00538-201ENST00000626109 FBXO3Q9UK99 471 aa17.7■□□□□ 0.42
LINC00538-201ENST00000626109 FHOD3Q2V2M9 1422 aa17.7■□□□□ 0.42
LINC00538-201ENST00000626109 RIMBP3CA6NJZ7 1639 aa17.67■□□□□ 0.42
LINC00538-201ENST00000626109 RIMBP3BA6NNM3 1639 aa17.67■□□□□ 0.42
LINC00538-201ENST00000626109 RIMBP3Q9UFD9 1639 aa17.67■□□□□ 0.42
LINC00538-201ENST00000626109 ARAP1Q96P48 1450 aa17.66■□□□□ 0.42
LINC00538-201ENST00000626109 PTPRGP23470 1445 aa17.65■□□□□ 0.42
LINC00538-201ENST00000626109 DNAJC5Q9H3Z4 198 aa17.64■□□□□ 0.42
LINC00538-201ENST00000626109 FMN1Q68DA7 1419 aa17.62■□□□□ 0.41
LINC00538-201ENST00000626109 ADRA2BP18089 450 aa17.62■□□□□ 0.41
LINC00538-201ENST00000626109 KDM2AQ9Y2K7 1162 aa17.57■□□□□ 0.4
LINC00538-201ENST00000626109 VPS8Q8N3P4 1428 aa17.56■□□□□ 0.4
LINC00538-201ENST00000626109 FKBP8Q14318 412 aa17.55■□□□□ 0.4
LINC00538-201ENST00000626109 PLB1Q6P1J6 1458 aa17.54■□□□□ 0.4
LINC00538-201ENST00000626109 UACAQ9BZF9 1416 aa17.54■□□□□ 0.4
LINC00538-201ENST00000626109 ABCA8O94911 1581 aa17.53■□□□□ 0.4
LINC00538-201ENST00000626109 CYB5RLQ6IPT4 315 aa17.53■□□□□ 0.4
LINC00538-201ENST00000626109 RAPGEF6Q8TEU7 1601 aa17.53■□□□□ 0.4
LINC00538-201ENST00000626109 ZEB1P37275 1124 aaPredicted RBP17.53■□□□□ 0.4
LINC00538-201ENST00000626109 PCF11O94913 1555 aaKnown RBP17.52■□□□□ 0.39
LINC00538-201ENST00000626109 CASKIN1Q8WXD9 1431 aa17.51■□□□□ 0.39
LINC00538-201ENST00000626109 ABCC2Q92887 1545 aa17.51■□□□□ 0.39
LINC00538-201ENST00000626109 FYCO1Q9BQS8 1478 aa17.5■□□□□ 0.39
LINC00538-201ENST00000626109 HECW1Q76N89 1606 aa17.5■□□□□ 0.39
LINC00538-201ENST00000626109 UHRF1BP1LA0JNW5 1464 aa17.5■□□□□ 0.39
LINC00538-201ENST00000626109 ATP1B4Q9UN42 357 aaPredicted RBP17.49■□□□□ 0.39
LINC00538-201ENST00000626109 ADCY10Q96PN6 1610 aa17.47■□□□□ 0.39
LINC00538-201ENST00000626109 NUP153P49790 1475 aaKnown RBP17.46■□□□□ 0.39
LINC00538-201ENST00000626109 PPARGC1BQ86YN6 1023 aaKnown RBP17.45■□□□□ 0.38
LINC00538-201ENST00000626109 CCDC18Q5T9S5 1454 aa17.42■□□□□ 0.38
LINC00538-201ENST00000626109 ARID3CA6NKF2 412 aa17.41■□□□□ 0.38
LINC00538-201ENST00000626109 EPRSP07814 1512 aaKnown RBP17.41■□□□□ 0.38
LINC00538-201ENST00000626109 KDM5BQ9UGL1 1544 aa17.41■□□□□ 0.38
LINC00538-201ENST00000626109 NPM1P06748 294 aaKnown RBP eCLIP17.41■□□□□ 0.38
LINC00538-201ENST00000626109 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.39■□□□□ 0.37
LINC00538-201ENST00000626109 HNRNPUL2Q1KMD3 747 aaKnown RBP17.39■□□□□ 0.37
LINC00538-201ENST00000626109 ATP10BO94823 1461 aa17.39■□□□□ 0.37
LINC00538-201ENST00000626109 ZCCHC11Q5TAX3 1644 aaKnown RBP17.38■□□□□ 0.37
LINC00538-201ENST00000626109 CDK13Q14004 1512 aaKnown RBP17.38■□□□□ 0.37
LINC00538-201ENST00000626109 LRRIQ1Q96JM4 1722 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms