RNA–Protein interactions for RNA: ENST00000623342.1

SND1-IT1-201, SND1 intronic transcript 1, humanhuman

BASIC

Gene SND1-IT1, Length 2,481 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-IT1-201ENST00000623342 CCNB3Q8WWL7 1395 aa12.37□□□□□ -0.43
SND1-IT1-201ENST00000623342 CLSPNQ9HAW4 1339 aa12.35□□□□□ -0.43
SND1-IT1-201ENST00000623342 EFCAB5A4FU69 1503 aa12.35□□□□□ -0.43
SND1-IT1-201ENST00000623342 CTTNBP2Q8WZ74 1663 aa12.34□□□□□ -0.43
SND1-IT1-201ENST00000623342 LRRC9Q6ZRR7 1453 aa12.33□□□□□ -0.43
SND1-IT1-201ENST00000623342 DHX57Q6P158 1386 aaKnown RBP12.33□□□□□ -0.44
SND1-IT1-201ENST00000623342 ABCA5Q8WWZ7 1642 aa12.33□□□□□ -0.44
SND1-IT1-201ENST00000623342 TDRD9Q8NDG6 1382 aaKnown RBP12.32□□□□□ -0.44
SND1-IT1-201ENST00000623342 PCF11O94913 1555 aaKnown RBP12.32□□□□□ -0.44
SND1-IT1-201ENST00000623342 CFAP43Q8NDM7 1665 aa12.32□□□□□ -0.44
SND1-IT1-201ENST00000623342 P3H3Q8IVL6 736 aa12.3□□□□□ -0.44
SND1-IT1-201ENST00000623342 GAPVD1Q14C86 1478 aa12.3□□□□□ -0.44
SND1-IT1-201ENST00000623342 FHOD3Q2V2M9 1422 aa12.3□□□□□ -0.44
SND1-IT1-201ENST00000623342 FYCO1Q9BQS8 1478 aa12.29□□□□□ -0.44
SND1-IT1-201ENST00000623342 AQRO60306 1485 aaKnown RBP eCLIP12.29□□□□□ -0.44
SND1-IT1-201ENST00000623342 CASKIN1Q8WXD9 1431 aa12.28□□□□□ -0.44
SND1-IT1-201ENST00000623342 PHLDB1Q86UU1 1377 aa12.26□□□□□ -0.45
SND1-IT1-201ENST00000623342 FMN1Q68DA7 1419 aa12.25□□□□□ -0.45
SND1-IT1-201ENST00000623342 TARBP1Q13395 1621 aaKnown RBP12.25□□□□□ -0.45
SND1-IT1-201ENST00000623342 ITGAEP38570 1179 aa12.25□□□□□ -0.45
SND1-IT1-201ENST00000623342 ATP1B4Q9UN42 357 aaPredicted RBP12.25□□□□□ -0.45
SND1-IT1-201ENST00000623342 SAMD9Q5K651 1589 aa12.23□□□□□ -0.45
SND1-IT1-201ENST00000623342 RAB3GAP2Q9H2M9 1393 aa12.21□□□□□ -0.45
SND1-IT1-201ENST00000623342 SNAPC4Q5SXM2 1469 aa12.21□□□□□ -0.45
SND1-IT1-201ENST00000623342 SCAF1Q9H7N4 1312 aaKnown RBP12.2□□□□□ -0.46
SND1-IT1-201ENST00000623342 SETD5Q9C0A6 1442 aa12.2□□□□□ -0.46
SND1-IT1-201ENST00000623342 ACIN1Q9UKV3 1341 aaKnown RBP12.19□□□□□ -0.46
SND1-IT1-201ENST00000623342 FAM50AQ14320 339 aaKnown RBP12.19□□□□□ -0.46
SND1-IT1-201ENST00000623342 ZNF608Q9ULD9 1512 aaPredicted RBP12.19□□□□□ -0.46
SND1-IT1-201ENST00000623342 MRC2Q9UBG0 1479 aa12.19□□□□□ -0.46
SND1-IT1-201ENST00000623342 PBRM1Q86U86 1689 aa12.18□□□□□ -0.46
SND1-IT1-201ENST00000623342 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.18□□□□□ -0.46
SND1-IT1-201ENST00000623342 CENPBP07199 599 aaPredicted RBP12.18□□□□□ -0.46
SND1-IT1-201ENST00000623342 THOC2Q8NI27 1593 aaKnown RBP12.16□□□□□ -0.46
SND1-IT1-201ENST00000623342 NEUROD1Q13562 356 aa12.15□□□□□ -0.46
SND1-IT1-201ENST00000623342 GRIN2BQ13224 1484 aa12.15□□□□□ -0.46
SND1-IT1-201ENST00000623342 MAPKBP1O60336 1514 aa12.15□□□□□ -0.47
SND1-IT1-201ENST00000623342 ERCC6Q03468 1493 aa12.14□□□□□ -0.47
SND1-IT1-201ENST00000623342 MTUS2Q5JR59 1369 aa12.14□□□□□ -0.47
SND1-IT1-201ENST00000623342 ADAMTS12P58397 1594 aa12.14□□□□□ -0.47
SND1-IT1-201ENST00000623342 LRRIQ1Q96JM4 1722 aa12.14□□□□□ -0.47
SND1-IT1-201ENST00000623342 FGD6Q6ZV73 1430 aa12.13□□□□□ -0.47
SND1-IT1-201ENST00000623342 MIER1Q8N108 512 aa12.13□□□□□ -0.47
SND1-IT1-201ENST00000623342 WDR62O43379 1518 aa12.12□□□□□ -0.47
SND1-IT1-201ENST00000623342 IQGAP2Q13576 1575 aa12.11□□□□□ -0.47
SND1-IT1-201ENST00000623342 IFT140Q96RY7 1462 aa12.11□□□□□ -0.47
SND1-IT1-201ENST00000623342 EHBP1L1Q8N3D4 1523 aa12.1□□□□□ -0.47
SND1-IT1-201ENST00000623342 NCOA2Q15596 1464 aa12.09□□□□□ -0.47
SND1-IT1-201ENST00000623342 CCDC18Q5T9S5 1454 aa12.09□□□□□ -0.47
SND1-IT1-201ENST00000623342 SUPT6HQ7KZ85 1726 aaKnown RBP12.09□□□□□ -0.47
SND1-IT1-201ENST00000623342 MYOM3Q5VTT5 1437 aa12.08□□□□□ -0.48
SND1-IT1-201ENST00000623342 HECW1Q76N89 1606 aa12.07□□□□□ -0.48
SND1-IT1-201ENST00000623342 UGGT2Q9NYU1 1516 aa12.05□□□□□ -0.48
SND1-IT1-201ENST00000623342 EIF4G3O43432 1585 aaKnown RBP12.05□□□□□ -0.48
SND1-IT1-201ENST00000623342 ARHGEF11O15085 1522 aa12.05□□□□□ -0.48
SND1-IT1-201ENST00000623342 MAGI3Q5TCQ9 1506 aa12.04□□□□□ -0.48
SND1-IT1-201ENST00000623342 HFM1A2PYH4 1435 aa12.03□□□□□ -0.48
SND1-IT1-201ENST00000623342 YTHDC1Q96MU7 727 aaKnown RBP12.03□□□□□ -0.48
SND1-IT1-201ENST00000623342 TIMELESSQ9UNS1 1208 aa12.03□□□□□ -0.48
SND1-IT1-201ENST00000623342 PTPRKQ15262 1439 aa12.03□□□□□ -0.48
SND1-IT1-201ENST00000623342 EPRSP07814 1512 aaKnown RBP12.03□□□□□ -0.48
SND1-IT1-201ENST00000623342 PTPN23Q9H3S7 1636 aa12.02□□□□□ -0.49
SND1-IT1-201ENST00000623342 SIN3AQ96ST3 1273 aa12.02□□□□□ -0.49
SND1-IT1-201ENST00000623342 GTF3C3Q9Y5Q9 886 aa12.01□□□□□ -0.49
SND1-IT1-201ENST00000623342 KIAA0586Q9BVV6 1533 aa12.01□□□□□ -0.49
SND1-IT1-201ENST00000623342 TCOF1Q13428 1488 aaKnown RBP11.99□□□□□ -0.49
SND1-IT1-201ENST00000623342 UACAQ9BZF9 1416 aa11.99□□□□□ -0.49
SND1-IT1-201ENST00000623342 ARID3CA6NKF2 412 aa11.99□□□□□ -0.49
SND1-IT1-201ENST00000623342 GRIN2AQ12879 1464 aa11.99□□□□□ -0.49
SND1-IT1-201ENST00000623342 NAIPQ13075 1403 aa11.98□□□□□ -0.49
SND1-IT1-201ENST00000623342 FBLN2P98095 1184 aa11.98□□□□□ -0.49
SND1-IT1-201ENST00000623342 CDK13Q14004 1512 aaKnown RBP11.98□□□□□ -0.49
SND1-IT1-201ENST00000623342 KIAA0556O60303 1618 aa11.98□□□□□ -0.49
SND1-IT1-201ENST00000623342 DISP1Q96F81 1524 aa11.97□□□□□ -0.49
SND1-IT1-201ENST00000623342 MIA2Q96PC5 1412 aa11.96□□□□□ -0.49
SND1-IT1-201ENST00000623342 MAGI1Q96QZ7 1491 aaPredicted RBP11.96□□□□□ -0.5
SND1-IT1-201ENST00000623342 PPP1R15AO75807 674 aaPredicted RBP11.94□□□□□ -0.5
SND1-IT1-201ENST00000623342 AKNAQ7Z591 1439 aa11.93□□□□□ -0.5
SND1-IT1-201ENST00000623342 GCC2Q8IWJ2 1684 aa11.93□□□□□ -0.5
SND1-IT1-201ENST00000623342 SYNJ2O15056 1496 aa11.93□□□□□ -0.5
SND1-IT1-201ENST00000623342 RAPGEF6Q8TEU7 1601 aa11.92□□□□□ -0.5
SND1-IT1-201ENST00000623342 NUP153P49790 1475 aaKnown RBP11.92□□□□□ -0.5
SND1-IT1-201ENST00000623342 TONSLQ96HA7 1378 aa11.91□□□□□ -0.5
SND1-IT1-201ENST00000623342 CHMP7Q8WUX9 453 aaPredicted RBP11.91□□□□□ -0.5
SND1-IT1-201ENST00000623342 CEP170Q5SW79 1584 aa11.91□□□□□ -0.5
SND1-IT1-201ENST00000623342 RRP7BPQ9NSQ0 103 aa11.9□□□□□ -0.5
SND1-IT1-201ENST00000623342 CHIC2Q9UKJ5 165 aa11.89□□□□□ -0.51
SND1-IT1-201ENST00000623342 CDK11AQ9UQ88 783 aaPredicted RBP11.89□□□□□ -0.51
SND1-IT1-201ENST00000623342 NUP160Q12769 1436 aa11.86□□□□□ -0.51
SND1-IT1-201ENST00000623342 ROCK1Q13464 1354 aa11.85□□□□□ -0.51
SND1-IT1-201ENST00000623342 KDM6BO15054 1643 aa11.85□□□□□ -0.51
SND1-IT1-201ENST00000623342 DAPK1P53355 1430 aa11.85□□□□□ -0.51
SND1-IT1-201ENST00000623342 CARMIL2Q6F5E8 1435 aa11.85□□□□□ -0.51
SND1-IT1-201ENST00000623342 DNMT1P26358 1616 aaKnown RBP11.85□□□□□ -0.51
SND1-IT1-201ENST00000623342 PELP1Q8IZL8 1130 aaKnown RBP11.84□□□□□ -0.51
SND1-IT1-201ENST00000623342 TROQ12816 1431 aaPredicted RBP11.84□□□□□ -0.51
SND1-IT1-201ENST00000623342 DDX10Q13206 875 aaKnown RBP11.84□□□□□ -0.51
SND1-IT1-201ENST00000623342 TRIM52Q96A61 297 aa11.84□□□□□ -0.51
SND1-IT1-201ENST00000623342 DENND4BO75064 1496 aaPredicted RBP11.83□□□□□ -0.52
SND1-IT1-201ENST00000623342 PLB1Q6P1J6 1458 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms