RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 FBLN2P98095 1184 aa18.44■□□□□ 0.54
VRK3-223ENST00000601341 RANGAP1P46060 587 aaPredicted RBP18.43■□□□□ 0.54
VRK3-223ENST00000601341 PCGF6Q9BYE7 350 aa18.38■□□□□ 0.53
VRK3-223ENST00000601341 CTTNBP2Q8WZ74 1663 aa18.37■□□□□ 0.53
VRK3-223ENST00000601341 KIAA0586Q9BVV6 1533 aa18.34■□□□□ 0.53
VRK3-223ENST00000601341 TRIM26Q12899 539 aaPredicted RBP18.32■□□□□ 0.52
VRK3-223ENST00000601341 NUP160Q12769 1436 aa18.32■□□□□ 0.52
VRK3-223ENST00000601341 ARHGAP35Q9NRY4 1499 aa18.32■□□□□ 0.52
VRK3-223ENST00000601341 IQGAP2Q13576 1575 aa18.31■□□□□ 0.52
VRK3-223ENST00000601341 CEP170Q5SW79 1584 aa18.29■□□□□ 0.52
VRK3-223ENST00000601341 EFCAB5A4FU69 1503 aa18.28■□□□□ 0.52
VRK3-223ENST00000601341 ARAP1Q96P48 1450 aa18.27■□□□□ 0.51
VRK3-223ENST00000601341 VPS8Q8N3P4 1428 aa18.26■□□□□ 0.51
VRK3-223ENST00000601341 CHD1O14646 1710 aa18.25■□□□□ 0.51
VRK3-223ENST00000601341 UGGT2Q9NYU1 1516 aa18.23■□□□□ 0.51
VRK3-223ENST00000601341 P3H3Q8IVL6 736 aa18.23■□□□□ 0.51
VRK3-223ENST00000601341 JPH4Q96JJ6 628 aa18.21■□□□□ 0.51
VRK3-223ENST00000601341 SAMD9Q5K651 1589 aa18.21■□□□□ 0.51
VRK3-223ENST00000601341 FHOD3Q2V2M9 1422 aa18.19■□□□□ 0.5
VRK3-223ENST00000601341 FMN1Q68DA7 1419 aa18.15■□□□□ 0.5
VRK3-223ENST00000601341 CARMIL2Q6F5E8 1435 aa18.14■□□□□ 0.5
VRK3-223ENST00000601341 DISP1Q96F81 1524 aa18.14■□□□□ 0.49
VRK3-223ENST00000601341 APLP2Q06481 763 aa18.13■□□□□ 0.49
VRK3-223ENST00000601341 OSCARQ8IYS5 282 aa18.11■□□□□ 0.49
VRK3-223ENST00000601341 KIAA0556O60303 1618 aa18.11■□□□□ 0.49
VRK3-223ENST00000601341 CLASP1Q7Z460 1538 aa18.09■□□□□ 0.49
VRK3-223ENST00000601341 PRG4Q92954 1404 aaPredicted RBP18.09■□□□□ 0.49
VRK3-223ENST00000601341 CASKIN1Q8WXD9 1431 aa18.07■□□□□ 0.48
VRK3-223ENST00000601341 SHROOM2Q13796 1616 aa18.06■□□□□ 0.48
VRK3-223ENST00000601341 DNAJC5Q9H3Z4 198 aa18.05■□□□□ 0.48
VRK3-223ENST00000601341 FYCO1Q9BQS8 1478 aa18.05■□□□□ 0.48
VRK3-223ENST00000601341 ATP1B4Q9UN42 357 aaPredicted RBP18.04■□□□□ 0.48
VRK3-223ENST00000601341 PPARGC1BQ86YN6 1023 aaKnown RBP18.03■□□□□ 0.48
VRK3-223ENST00000601341 PCF11O94913 1555 aaKnown RBP18.02■□□□□ 0.48
VRK3-223ENST00000601341 TTBK1Q5TCY1 1321 aaPredicted RBP18.01■□□□□ 0.47
VRK3-223ENST00000601341 ZEB1P37275 1124 aaPredicted RBP18.01■□□□□ 0.47
VRK3-223ENST00000601341 MAP3K1Q13233 1512 aa17.99■□□□□ 0.47
VRK3-223ENST00000601341 PTPRGP23470 1445 aa17.98■□□□□ 0.47
VRK3-223ENST00000601341 TIAM1Q13009 1591 aa17.93■□□□□ 0.46
VRK3-223ENST00000601341 KANK4Q5T7N3 995 aaPredicted RBP17.93■□□□□ 0.46
VRK3-223ENST00000601341 HECW1Q76N89 1606 aa17.93■□□□□ 0.46
VRK3-223ENST00000601341 ERCC6L2Q5T890 1561 aa17.93■□□□□ 0.46
VRK3-223ENST00000601341 CCDC18Q5T9S5 1454 aa17.91■□□□□ 0.46
VRK3-223ENST00000601341 PLB1Q6P1J6 1458 aa17.91■□□□□ 0.46
VRK3-223ENST00000601341 RAPGEF6Q8TEU7 1601 aa17.91■□□□□ 0.46
VRK3-223ENST00000601341 EPRSP07814 1512 aaKnown RBP17.88■□□□□ 0.45
VRK3-223ENST00000601341 LRRC9Q6ZRR7 1453 aa17.88■□□□□ 0.45
VRK3-223ENST00000601341 CFAP43Q8NDM7 1665 aa17.88■□□□□ 0.45
VRK3-223ENST00000601341 NUP153P49790 1475 aaKnown RBP17.88■□□□□ 0.45
VRK3-223ENST00000601341 ABCA8O94911 1581 aa17.88■□□□□ 0.45
VRK3-223ENST00000601341 UACAQ9BZF9 1416 aa17.85■□□□□ 0.45
VRK3-223ENST00000601341 MTUS2Q5JR59 1369 aa17.84■□□□□ 0.45
VRK3-223ENST00000601341 ARID3CA6NKF2 412 aa17.84■□□□□ 0.45
VRK3-223ENST00000601341 LRRIQ1Q96JM4 1722 aa17.82■□□□□ 0.44
VRK3-223ENST00000601341 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.82■□□□□ 0.44
VRK3-223ENST00000601341 HNRNPUL2Q1KMD3 747 aaKnown RBP17.82■□□□□ 0.44
VRK3-223ENST00000601341 CDK11AQ9UQ88 783 aaPredicted RBP17.82■□□□□ 0.44
VRK3-223ENST00000601341 CDK13Q14004 1512 aaKnown RBP17.82■□□□□ 0.44
VRK3-223ENST00000601341 ABCC2Q92887 1545 aa17.78■□□□□ 0.44
VRK3-223ENST00000601341 UHRF1BP1LA0JNW5 1464 aa17.77■□□□□ 0.44
VRK3-223ENST00000601341 ATP10BO94823 1461 aa17.77■□□□□ 0.44
VRK3-223ENST00000601341 EHBP1L1Q8N3D4 1523 aa17.77■□□□□ 0.44
VRK3-223ENST00000601341 ARHGEF11O15085 1522 aa17.74■□□□□ 0.43
VRK3-223ENST00000601341 MAGI3Q5TCQ9 1506 aa17.74■□□□□ 0.43
VRK3-223ENST00000601341 PLEKHD1A6NEE1 506 aa17.74■□□□□ 0.43
VRK3-223ENST00000601341 TROQ12816 1431 aaPredicted RBP17.71■□□□□ 0.43
VRK3-223ENST00000601341 PHLDB1Q86UU1 1377 aa17.7■□□□□ 0.42
VRK3-223ENST00000601341 NCOA2Q15596 1464 aa17.7■□□□□ 0.42
VRK3-223ENST00000601341 KDM5BQ9UGL1 1544 aa17.69■□□□□ 0.42
VRK3-223ENST00000601341 SUPT6HQ7KZ85 1726 aaKnown RBP17.69■□□□□ 0.42
VRK3-223ENST00000601341 RRBP1Q9P2E9 1410 aaKnown RBP17.67■□□□□ 0.42
VRK3-223ENST00000601341 ADCY10Q96PN6 1610 aa17.66■□□□□ 0.42
VRK3-223ENST00000601341 CCNB3Q8WWL7 1395 aa17.65■□□□□ 0.42
VRK3-223ENST00000601341 RIMBP3CA6NJZ7 1639 aa17.63■□□□□ 0.41
VRK3-223ENST00000601341 RIMBP3BA6NNM3 1639 aa17.63■□□□□ 0.41
VRK3-223ENST00000601341 RIMBP3Q9UFD9 1639 aa17.63■□□□□ 0.41
VRK3-223ENST00000601341 NPM1P06748 294 aaKnown RBP eCLIP17.63■□□□□ 0.41
VRK3-223ENST00000601341 MYOM3Q5VTT5 1437 aa17.62■□□□□ 0.41
VRK3-223ENST00000601341 CYB5RLQ6IPT4 315 aa17.62■□□□□ 0.41
VRK3-223ENST00000601341 ZCCHC11Q5TAX3 1644 aaKnown RBP17.62■□□□□ 0.41
VRK3-223ENST00000601341 FGD6Q6ZV73 1430 aa17.6■□□□□ 0.41
VRK3-223ENST00000601341 KIF14Q15058 1648 aa17.58■□□□□ 0.41
VRK3-223ENST00000601341 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.57■□□□□ 0.4
VRK3-223ENST00000601341 FAM50AQ14320 339 aaKnown RBP17.57■□□□□ 0.4
VRK3-223ENST00000601341 MIA2Q96PC5 1412 aa17.56■□□□□ 0.4
VRK3-223ENST00000601341 KCNH8Q96L42 1107 aa17.55■□□□□ 0.4
VRK3-223ENST00000601341 ABCC10Q5T3U5 1492 aa17.55■□□□□ 0.4
VRK3-223ENST00000601341 WDR7Q9Y4E6 1490 aa17.53■□□□□ 0.4
VRK3-223ENST00000601341 GPATCH8Q9UKJ3 1502 aaKnown RBP17.52■□□□□ 0.4
VRK3-223ENST00000601341 ASXL2Q76L83 1435 aa17.52■□□□□ 0.4
VRK3-223ENST00000601341 CFDP1Q9UEE9 299 aaPredicted RBP17.52■□□□□ 0.4
VRK3-223ENST00000601341 TCOF1Q13428 1488 aaKnown RBP17.49■□□□□ 0.39
VRK3-223ENST00000601341 PTPN23Q9H3S7 1636 aa17.49■□□□□ 0.39
VRK3-223ENST00000601341 ITSN2Q9NZM3 1697 aa17.49■□□□□ 0.39
VRK3-223ENST00000601341 ITGAEP38570 1179 aa17.48■□□□□ 0.39
VRK3-223ENST00000601341 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.48■□□□□ 0.39
VRK3-223ENST00000601341 ZNF777Q9ULD5 760 aaPredicted RBP17.44■□□□□ 0.38
VRK3-223ENST00000601341 TTC37Q6PGP7 1564 aa17.44■□□□□ 0.38
VRK3-223ENST00000601341 MAPKBP1O60336 1514 aa17.43■□□□□ 0.38
VRK3-223ENST00000601341 ZNF644Q9H582 1327 aaPredicted RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms