RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 KDM4FA0A1W2PPD8 638 aa27.71■■■□□ 2.03
LSM4-206ENST00000600289 NUP160Q12769 1436 aa27.71■■■□□ 2.03
LSM4-206ENST00000600289 IGF1RP08069 1367 aa27.66■■■□□ 2.02
LSM4-206ENST00000600289 ABCC10Q5T3U5 1492 aa27.6■■■□□ 2.01
LSM4-206ENST00000600289 DIP2BQ9P265 1576 aa27.6■■■□□ 2.01
LSM4-206ENST00000600289 KDM6BO15054 1643 aa27.59■■■□□ 2.01
LSM4-206ENST00000600289 RUSC2Q8N2Y8 1516 aa27.57■■■□□ 2
LSM4-206ENST00000600289 MAPKBP1O60336 1514 aa27.52■■■□□ 2
LSM4-206ENST00000600289 FAM69CQ0P6D2 419 aa27.49■■□□□ 1.99
LSM4-206ENST00000600289 TSPOAP1O95153 1857 aa27.49■■□□□ 1.99
LSM4-206ENST00000600289 CARMIL1Q5VZK9 1371 aa27.48■■□□□ 1.99
LSM4-206ENST00000600289 PRG4Q92954 1404 aaPredicted RBP27.42■■□□□ 1.98
LSM4-206ENST00000600289 KIAA0586Q9BVV6 1533 aa27.41■■□□□ 1.98
LSM4-206ENST00000600289 ADCY10Q96PN6 1610 aa27.41■■□□□ 1.98
LSM4-206ENST00000600289 RAPGEF2Q9Y4G8 1499 aa27.38■■□□□ 1.97
LSM4-206ENST00000600289 HECW2Q9P2P5 1572 aa27.31■■□□□ 1.96
LSM4-206ENST00000600289 EEA1Q15075 1411 aa27.31■■□□□ 1.96
LSM4-206ENST00000600289 PRXQ9BXM0 1461 aa27.31■■□□□ 1.96
LSM4-206ENST00000600289 IQGAP2Q13576 1575 aa27.3■■□□□ 1.96
LSM4-206ENST00000600289 CTTNBP2Q8WZ74 1663 aa27.3■■□□□ 1.96
LSM4-206ENST00000600289 JPH4Q96JJ6 628 aa27.29■■□□□ 1.96
LSM4-206ENST00000600289 ADGRL1O94910 1474 aa27.28■■□□□ 1.96
LSM4-206ENST00000600289 PPRC1Q5VV67 1664 aaKnown RBP27.24■■□□□ 1.95
LSM4-206ENST00000600289 NPM1P06748 294 aaKnown RBP eCLIP27.23■■□□□ 1.95
LSM4-206ENST00000600289 CHIC1Q5VXU3 224 aa27.22■■□□□ 1.95
LSM4-206ENST00000600289 UGGT2Q9NYU1 1516 aa27.16■■□□□ 1.94
LSM4-206ENST00000600289 CSRNP3Q8WYN3 585 aa27.14■■□□□ 1.94
LSM4-206ENST00000600289 KIF21BO75037 1637 aa27.09■■□□□ 1.93
LSM4-206ENST00000600289 CARMIL2Q6F5E8 1435 aa27.08■■□□□ 1.93
LSM4-206ENST00000600289 DISP1Q96F81 1524 aa27.07■■□□□ 1.92
LSM4-206ENST00000600289 KIAA0556O60303 1618 aa27.05■■□□□ 1.92
LSM4-206ENST00000600289 GLI2P10070 1586 aa27.03■■□□□ 1.92
LSM4-206ENST00000600289 COL17A1Q9UMD9 1497 aaPredicted RBP27■■□□□ 1.91
LSM4-206ENST00000600289 TNIKQ9UKE5 1360 aa26.99■■□□□ 1.91
LSM4-206ENST00000600289 GOLGA3Q08378 1498 aa26.96■■□□□ 1.91
LSM4-206ENST00000600289 PTPRGP23470 1445 aa26.94■■□□□ 1.9
LSM4-206ENST00000600289 FBXO41Q8TF61 875 aa26.92■■□□□ 1.9
LSM4-206ENST00000600289 MAP3K4Q9Y6R4 1608 aa26.91■■□□□ 1.9
LSM4-206ENST00000600289 ABCC2Q92887 1545 aa26.9■■□□□ 1.9
LSM4-206ENST00000600289 ASXL2Q76L83 1435 aa26.9■■□□□ 1.9
LSM4-206ENST00000600289 SAMD9Q5K651 1589 aa26.89■■□□□ 1.9
LSM4-206ENST00000600289 FAM9AQ8IZU1 332 aaPredicted RBP26.89■■□□□ 1.9
LSM4-206ENST00000600289 UHRF1BP1LA0JNW5 1464 aa26.87■■□□□ 1.89
LSM4-206ENST00000600289 PLB1Q6P1J6 1458 aa26.87■■□□□ 1.89
LSM4-206ENST00000600289 UACAQ9BZF9 1416 aa26.81■■□□□ 1.88
LSM4-206ENST00000600289 EPRSP07814 1512 aaKnown RBP26.76■■□□□ 1.87
LSM4-206ENST00000600289 ABCA8O94911 1581 aa26.75■■□□□ 1.87
LSM4-206ENST00000600289 EFCAB5A4FU69 1503 aa26.75■■□□□ 1.87
LSM4-206ENST00000600289 TEX14Q8IWB6 1497 aa26.74■■□□□ 1.87
LSM4-206ENST00000600289 KDM5BQ9UGL1 1544 aa26.73■■□□□ 1.87
LSM4-206ENST00000600289 ZCCHC11Q5TAX3 1644 aaKnown RBP26.71■■□□□ 1.87
LSM4-206ENST00000600289 TTBK1Q5TCY1 1321 aaPredicted RBP26.67■■□□□ 1.86
LSM4-206ENST00000600289 RAPGEF6Q8TEU7 1601 aa26.61■■□□□ 1.85
LSM4-206ENST00000600289 UBTFP17480 764 aaKnown RBP26.58■■□□□ 1.85
LSM4-206ENST00000600289 LMTK3Q96Q04 1460 aa26.56■■□□□ 1.84
LSM4-206ENST00000600289 FHOD3Q2V2M9 1422 aa26.56■■□□□ 1.84
LSM4-206ENST00000600289 P3H3Q8IVL6 736 aa26.54■■□□□ 1.84
LSM4-206ENST00000600289 CFAP43Q8NDM7 1665 aa26.52■■□□□ 1.84
LSM4-206ENST00000600289 ARHGAP35Q9NRY4 1499 aa26.51■■□□□ 1.83
LSM4-206ENST00000600289 ADAMTSL3P82987 1691 aa26.5■■□□□ 1.83
LSM4-206ENST00000600289 WDR7Q9Y4E6 1490 aa26.49■■□□□ 1.83
LSM4-206ENST00000600289 MAGI3Q5TCQ9 1506 aa26.47■■□□□ 1.83
LSM4-206ENST00000600289 EHMT2Q96KQ7 1210 aa26.46■■□□□ 1.83
LSM4-206ENST00000600289 NUP153P49790 1475 aaKnown RBP26.45■■□□□ 1.82
LSM4-206ENST00000600289 RANGAP1P46060 587 aaPredicted RBP26.45■■□□□ 1.82
LSM4-206ENST00000600289 ATP10BO94823 1461 aa26.44■■□□□ 1.82
LSM4-206ENST00000600289 PTPRMP28827 1452 aa26.44■■□□□ 1.82
LSM4-206ENST00000600289 PCF11O94913 1555 aaKnown RBP26.41■■□□□ 1.82
LSM4-206ENST00000600289 FMN1Q68DA7 1419 aa26.41■■□□□ 1.82
LSM4-206ENST00000600289 HECW1Q76N89 1606 aa26.37■■□□□ 1.81
LSM4-206ENST00000600289 CD109Q6YHK3 1445 aa26.37■■□□□ 1.81
LSM4-206ENST00000600289 BCORL1Q5H9F3 1711 aa26.32■■□□□ 1.8
LSM4-206ENST00000600289 ILDR2Q71H61 639 aa26.31■■□□□ 1.8
LSM4-206ENST00000600289 MADDQ8WXG6 1647 aa26.31■■□□□ 1.8
LSM4-206ENST00000600289 ARAP3Q8WWN8 1544 aa26.3■■□□□ 1.8
LSM4-206ENST00000600289 ABCA9Q8IUA7 1624 aa26.29■■□□□ 1.8
LSM4-206ENST00000600289 CLIP1P30622 1438 aa26.29■■□□□ 1.8
LSM4-206ENST00000600289 LRRIQ1Q96JM4 1722 aa26.28■■□□□ 1.8
LSM4-206ENST00000600289 SOCS7O14512 581 aa26.27■■□□□ 1.8
LSM4-206ENST00000600289 CDK13Q14004 1512 aaKnown RBP26.23■■□□□ 1.79
LSM4-206ENST00000600289 ARID3CA6NKF2 412 aa26.22■■□□□ 1.79
LSM4-206ENST00000600289 CASKIN1Q8WXD9 1431 aa26.21■■□□□ 1.79
LSM4-206ENST00000600289 RIMS1Q86UR5 1692 aaKnown RBP26.19■■□□□ 1.78
LSM4-206ENST00000600289 FYCO1Q9BQS8 1478 aa26.18■■□□□ 1.78
LSM4-206ENST00000600289 CEP162Q5TB80 1403 aa26.17■■□□□ 1.78
LSM4-206ENST00000600289 DISP3Q9P2K9 1392 aa26.17■■□□□ 1.78
LSM4-206ENST00000600289 KCNH8Q96L42 1107 aa26.16■■□□□ 1.78
LSM4-206ENST00000600289 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.15■■□□□ 1.78
LSM4-206ENST00000600289 HNRNPUL2Q1KMD3 747 aaKnown RBP26.15■■□□□ 1.78
LSM4-206ENST00000600289 CCDC18Q5T9S5 1454 aa26.15■■□□□ 1.78
LSM4-206ENST00000600289 FRMPD1Q5SYB0 1578 aa26.15■■□□□ 1.78
LSM4-206ENST00000600289 PLEKHD1A6NEE1 506 aa26.12■■□□□ 1.77
LSM4-206ENST00000600289 CERKQ8TCT0 537 aa26.12■■□□□ 1.77
LSM4-206ENST00000600289 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.1■■□□□ 1.774e-7■■■□□ 15.9
LSM4-206ENST00000600289 TTC37Q6PGP7 1564 aa26.08■■□□□ 1.77
LSM4-206ENST00000600289 HSPA2P54652 639 aa26.07■■□□□ 1.76
LSM4-206ENST00000600289 SPATA31D1Q6ZQQ2 1576 aa26.07■■□□□ 1.76
LSM4-206ENST00000600289 KIF14Q15058 1648 aa26.05■■□□□ 1.76
LSM4-206ENST00000600289 CFAP74Q9C0B2 1584 aa26.04■■□□□ 1.76
LSM4-206ENST00000600289 CDK11AQ9UQ88 783 aaPredicted RBP26.03■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms