RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 FAM69CQ0P6D2 419 aa15.57■□□□□ 0.08
SHKBP1-220ENST00000599716 ABCC10Q5T3U5 1492 aa15.57■□□□□ 0.08
SHKBP1-220ENST00000599716 BIVM-ERCC5R4GMW8 1640 aa15.57■□□□□ 0.08
SHKBP1-220ENST00000599716 TOP2BQ02880 1626 aa15.56■□□□□ 0.08
SHKBP1-220ENST00000599716 ADGRL1O94910 1474 aa15.53■□□□□ 0.08
SHKBP1-220ENST00000599716 NUP160Q12769 1436 aa15.53■□□□□ 0.08
SHKBP1-220ENST00000599716 PHF23Q9BUL5 403 aaPredicted RBP15.51■□□□□ 0.07
SHKBP1-220ENST00000599716 FHAD1B1AJZ9 1412 aa15.51■□□□□ 0.07
SHKBP1-220ENST00000599716 SOCS7O14512 581 aa15.5■□□□□ 0.07
SHKBP1-220ENST00000599716 SHROOM2Q13796 1616 aa15.49■□□□□ 0.07
SHKBP1-220ENST00000599716 DIP2BQ9P265 1576 aa15.47■□□□□ 0.07
SHKBP1-220ENST00000599716 MAPKBP1O60336 1514 aa15.46■□□□□ 0.07
SHKBP1-220ENST00000599716 ERICH3Q5RHP9 1530 aa15.45■□□□□ 0.06
SHKBP1-220ENST00000599716 PRG4Q92954 1404 aaPredicted RBP15.44■□□□□ 0.06
SHKBP1-220ENST00000599716 JPH4Q96JJ6 628 aa15.39■□□□□ 0.05
SHKBP1-220ENST00000599716 RUSC2Q8N2Y8 1516 aa15.38■□□□□ 0.05
SHKBP1-220ENST00000599716 NPM1P06748 294 aaKnown RBP eCLIP15.37■□□□□ 0.05
SHKBP1-220ENST00000599716 ILDR2Q71H61 639 aa15.35■□□□□ 0.05
SHKBP1-220ENST00000599716 TTBK1Q5TCY1 1321 aaPredicted RBP15.3■□□□□ 0.04
SHKBP1-220ENST00000599716 ADCY10Q96PN6 1610 aa15.3■□□□□ 0.04
SHKBP1-220ENST00000599716 IGF1RP08069 1367 aa15.28■□□□□ 0.04
SHKBP1-220ENST00000599716 DISP3Q9P2K9 1392 aa15.28■□□□□ 0.04
SHKBP1-220ENST00000599716 TSPOAP1O95153 1857 aa15.26■□□□□ 0.03
SHKBP1-220ENST00000599716 KIAA0586Q9BVV6 1533 aa15.24■□□□□ 0.03
SHKBP1-220ENST00000599716 KIF27Q86VH2 1401 aa15.23■□□□□ 0.03
SHKBP1-220ENST00000599716 CUL7Q14999 1698 aa15.22■□□□□ 0.03
SHKBP1-220ENST00000599716 CARMIL1Q5VZK9 1371 aa15.17■□□□□ 0.02
SHKBP1-220ENST00000599716 COL17A1Q9UMD9 1497 aaPredicted RBP15.16■□□□□ 0.02
SHKBP1-220ENST00000599716 PTPRGP23470 1445 aa15.16■□□□□ 0.02
SHKBP1-220ENST00000599716 PPRC1Q5VV67 1664 aaKnown RBP15.12■□□□□ 0.01
SHKBP1-220ENST00000599716 GLI2P10070 1586 aa15.11■□□□□ 0.01
SHKBP1-220ENST00000599716 IQGAP2Q13576 1575 aa15.11■□□□□ 0.01
SHKBP1-220ENST00000599716 TNIKQ9UKE5 1360 aa15.1■□□□□ 0.01
SHKBP1-220ENST00000599716 ABCC2Q92887 1545 aa15.08■□□□□ 0.01
SHKBP1-220ENST00000599716 CARMIL2Q6F5E8 1435 aa15.08■□□□□ 0
SHKBP1-220ENST00000599716 ASXL2Q76L83 1435 aa15.08■□□□□ 0
SHKBP1-220ENST00000599716 DISP1Q96F81 1524 aa15.07■□□□□ 0
SHKBP1-220ENST00000599716 PLB1Q6P1J6 1458 aa15.06■□□□□ 0
SHKBP1-220ENST00000599716 SPATA31D1Q6ZQQ2 1576 aa15.06■□□□□ 0
SHKBP1-220ENST00000599716 TEX14Q8IWB6 1497 aa15.05■□□□□ -0
SHKBP1-220ENST00000599716 UACAQ9BZF9 1416 aa15.02■□□□□ -0
SHKBP1-220ENST00000599716 CERKQ8TCT0 537 aa15.02■□□□□ -0
SHKBP1-220ENST00000599716 PCF11O94913 1555 aaKnown RBP15□□□□□ -0.01
SHKBP1-220ENST00000599716 RAPGEF2Q9Y4G8 1499 aa15□□□□□ -0.01
SHKBP1-220ENST00000599716 ZCCHC11Q5TAX3 1644 aaKnown RBP14.99□□□□□ -0.01
SHKBP1-220ENST00000599716 UHRF1BP1LA0JNW5 1464 aa14.99□□□□□ -0.01
SHKBP1-220ENST00000599716 KIAA0556O60303 1618 aa14.99□□□□□ -0.01
SHKBP1-220ENST00000599716 EPRSP07814 1512 aaKnown RBP14.97□□□□□ -0.01
SHKBP1-220ENST00000599716 UGGT2Q9NYU1 1516 aa14.97□□□□□ -0.01
SHKBP1-220ENST00000599716 PTPRMP28827 1452 aa14.97□□□□□ -0.01
SHKBP1-220ENST00000599716 KDM5BQ9UGL1 1544 aa14.96□□□□□ -0.02
SHKBP1-220ENST00000599716 MAP3K4Q9Y6R4 1608 aa14.95□□□□□ -0.02
SHKBP1-220ENST00000599716 CTTNBP2Q8WZ74 1663 aa14.92□□□□□ -0.02
SHKBP1-220ENST00000599716 ARID3CA6NKF2 412 aa14.91□□□□□ -0.02
SHKBP1-220ENST00000599716 KCNH8Q96L42 1107 aa14.89□□□□□ -0.03
SHKBP1-220ENST00000599716 WDR7Q9Y4E6 1490 aa14.89□□□□□ -0.03
SHKBP1-220ENST00000599716 KIF21BO75037 1637 aa14.87□□□□□ -0.03
SHKBP1-220ENST00000599716 P3H3Q8IVL6 736 aa14.86□□□□□ -0.03
SHKBP1-220ENST00000599716 ABCA8O94911 1581 aa14.85□□□□□ -0.03
SHKBP1-220ENST00000599716 ADAMTSL3P82987 1691 aa14.84□□□□□ -0.03
SHKBP1-220ENST00000599716 CD109Q6YHK3 1445 aa14.82□□□□□ -0.04
SHKBP1-220ENST00000599716 PRXQ9BXM0 1461 aa14.82□□□□□ -0.04
SHKBP1-220ENST00000599716 HSPA2P54652 639 aa14.8□□□□□ -0.04
SHKBP1-220ENST00000599716 GOLGA3Q08378 1498 aa14.8□□□□□ -0.04
SHKBP1-220ENST00000599716 MAGI3Q5TCQ9 1506 aa14.79□□□□□ -0.04
SHKBP1-220ENST00000599716 CFAP43Q8NDM7 1665 aa14.79□□□□□ -0.04
SHKBP1-220ENST00000599716 RANGAP1P46060 587 aaPredicted RBP14.77□□□□□ -0.05
SHKBP1-220ENST00000599716 FOXD1Q16676 465 aa14.75□□□□□ -0.05
SHKBP1-220ENST00000599716 ATP10BO94823 1461 aa14.74□□□□□ -0.05
SHKBP1-220ENST00000599716 MADDQ8WXG6 1647 aa14.73□□□□□ -0.05
SHKBP1-220ENST00000599716 ARAP3Q8WWN8 1544 aa14.71□□□□□ -0.06
SHKBP1-220ENST00000599716 BCORL1Q5H9F3 1711 aa14.69□□□□□ -0.06
SHKBP1-220ENST00000599716 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.68□□□□□ -0.06
SHKBP1-220ENST00000599716 RAPGEF3O95398 923 aa14.68□□□□□ -0.06
SHKBP1-220ENST00000599716 HNRNPUL2Q1KMD3 747 aaKnown RBP14.68□□□□□ -0.06
SHKBP1-220ENST00000599716 FAM9AQ8IZU1 332 aaPredicted RBP14.68□□□□□ -0.06
SHKBP1-220ENST00000599716 SAMD9Q5K651 1589 aa14.68□□□□□ -0.06
SHKBP1-220ENST00000599716 CSRNP3Q8WYN3 585 aa14.67□□□□□ -0.06
SHKBP1-220ENST00000599716 RAPGEF6Q8TEU7 1601 aa14.66□□□□□ -0.06
SHKBP1-220ENST00000599716 ABCA9Q8IUA7 1624 aa14.66□□□□□ -0.06
SHKBP1-220ENST00000599716 FHOD3Q2V2M9 1422 aa14.66□□□□□ -0.06
SHKBP1-220ENST00000599716 ARID4BQ4LE39 1312 aaPredicted RBP14.65□□□□□ -0.06
SHKBP1-220ENST00000599716 DMRT2Q9Y5R5 561 aa14.64□□□□□ -0.07
SHKBP1-220ENST00000599716 EHMT2Q96KQ7 1210 aa14.63□□□□□ -0.07
SHKBP1-220ENST00000599716 NUP153P49790 1475 aaKnown RBP14.63□□□□□ -0.07
SHKBP1-220ENST00000599716 FRMPD1Q5SYB0 1578 aa14.62□□□□□ -0.07
SHKBP1-220ENST00000599716 YEATS2Q9ULM3 1422 aa14.61□□□□□ -0.07
SHKBP1-220ENST00000599716 PHLDB1Q86UU1 1377 aa14.6□□□□□ -0.07
SHKBP1-220ENST00000599716 IQSEC2Q5JU85 1478 aa14.6□□□□□ -0.07
SHKBP1-220ENST00000599716 RIMS1Q86UR5 1692 aaKnown RBP14.6□□□□□ -0.07
SHKBP1-220ENST00000599716 PLPPR3Q6T4P5 718 aa14.56□□□□□ -0.08
SHKBP1-220ENST00000599716 NEO1Q92859 1461 aa14.56□□□□□ -0.08
SHKBP1-220ENST00000599716 CDK13Q14004 1512 aaKnown RBP14.54□□□□□ -0.08
SHKBP1-220ENST00000599716 TTC37Q6PGP7 1564 aa14.54□□□□□ -0.08
SHKBP1-220ENST00000599716 RICTORQ6R327 1708 aa14.52□□□□□ -0.08
SHKBP1-220ENST00000599716 SIGLEC1Q9BZZ2 1709 aa14.52□□□□□ -0.08
SHKBP1-220ENST00000599716 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.52□□□□□ -0.08
SHKBP1-220ENST00000599716 PLEKHD1A6NEE1 506 aa14.52□□□□□ -0.09
SHKBP1-220ENST00000599716 SRCAPQ6ZRS2 3230 aa14.51□□□□□ -0.09
SHKBP1-220ENST00000599716 POGZQ7Z3K3 1410 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms