RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 IGF1RP08069 1367 aa22.02■■□□□ 1.12
TRIM28-212ENST00000597995 KIF13AQ9H1H9 1805 aa21.99■■□□□ 1.11
TRIM28-212ENST00000597995 KIF27Q86VH2 1401 aa21.99■■□□□ 1.11
TRIM28-212ENST00000597995 NPM1P06748 294 aaKnown RBP eCLIP21.99■■□□□ 1.11
TRIM28-212ENST00000597995 KIAA0586Q9BVV6 1533 aa21.99■■□□□ 1.11
TRIM28-212ENST00000597995 CUL7Q14999 1698 aa21.95■■□□□ 1.1
TRIM28-212ENST00000597995 ABCC10Q5T3U5 1492 aa21.94■■□□□ 1.1
TRIM28-212ENST00000597995 MAPKBP1O60336 1514 aa21.93■■□□□ 1.1
TRIM28-212ENST00000597995 FAM69CQ0P6D2 419 aa21.93■■□□□ 1.1
TRIM28-212ENST00000597995 ADCY10Q96PN6 1610 aa21.89■■□□□ 1.09
TRIM28-212ENST00000597995 CARMIL1Q5VZK9 1371 aa21.86■■□□□ 1.09
TRIM28-212ENST00000597995 DIP2BQ9P265 1576 aa21.84■■□□□ 1.09
TRIM28-212ENST00000597995 PTPRGP23470 1445 aa21.81■■□□□ 1.08
TRIM28-212ENST00000597995 CARMIL2Q6F5E8 1435 aa21.78■■□□□ 1.08
TRIM28-212ENST00000597995 TNIKQ9UKE5 1360 aa21.76■■□□□ 1.07
TRIM28-212ENST00000597995 IQGAP2Q13576 1575 aa21.71■■□□□ 1.07
TRIM28-212ENST00000597995 ABCC2Q92887 1545 aa21.7■■□□□ 1.07
TRIM28-212ENST00000597995 TTBK1Q5TCY1 1321 aaPredicted RBP21.69■■□□□ 1.06
TRIM28-212ENST00000597995 KDM6BO15054 1643 aa21.69■■□□□ 1.06
TRIM28-212ENST00000597995 UHRF1BP1LA0JNW5 1464 aa21.67■■□□□ 1.06
TRIM28-212ENST00000597995 TSPOAP1O95153 1857 aa21.66■■□□□ 1.06
TRIM28-212ENST00000597995 PLB1Q6P1J6 1458 aa21.65■■□□□ 1.06
TRIM28-212ENST00000597995 RAPGEF2Q9Y4G8 1499 aa21.64■■□□□ 1.05
TRIM28-212ENST00000597995 ASXL2Q76L83 1435 aa21.63■■□□□ 1.05
TRIM28-212ENST00000597995 UACAQ9BZF9 1416 aa21.63■■□□□ 1.05
TRIM28-212ENST00000597995 DISP1Q96F81 1524 aa21.63■■□□□ 1.05
TRIM28-212ENST00000597995 GLI2P10070 1586 aa21.61■■□□□ 1.05
TRIM28-212ENST00000597995 UGGT2Q9NYU1 1516 aa21.6■■□□□ 1.05
TRIM28-212ENST00000597995 KDM4FA0A1W2PPD8 638 aa21.57■■□□□ 1.04
TRIM28-212ENST00000597995 KDM5BQ9UGL1 1544 aa21.56■■□□□ 1.04
TRIM28-212ENST00000597995 PPRC1Q5VV67 1664 aaKnown RBP21.52■■□□□ 1.04
TRIM28-212ENST00000597995 KIAA0556O60303 1618 aa21.51■■□□□ 1.03
TRIM28-212ENST00000597995 EPRSP07814 1512 aaKnown RBP21.5■■□□□ 1.03
TRIM28-212ENST00000597995 ZCCHC11Q5TAX3 1644 aaKnown RBP21.46■■□□□ 1.03
TRIM28-212ENST00000597995 MAP3K4Q9Y6R4 1608 aa21.45■■□□□ 1.02
TRIM28-212ENST00000597995 TEX14Q8IWB6 1497 aa21.44■■□□□ 1.02
TRIM28-212ENST00000597995 GOLGA3Q08378 1498 aa21.43■■□□□ 1.02
TRIM28-212ENST00000597995 COL17A1Q9UMD9 1497 aaPredicted RBP21.42■■□□□ 1.02
TRIM28-212ENST00000597995 CTTNBP2Q8WZ74 1663 aa21.41■■□□□ 1.02
TRIM28-212ENST00000597995 WDR7Q9Y4E6 1490 aa21.4■■□□□ 1.02
TRIM28-212ENST00000597995 PRXQ9BXM0 1461 aa21.39■■□□□ 1.01
TRIM28-212ENST00000597995 ABCA8O94911 1581 aa21.35■■□□□ 1.01
TRIM28-212ENST00000597995 ADGRL1O94910 1474 aa21.33■■□□□ 1.01
TRIM28-212ENST00000597995 CD109Q6YHK3 1445 aa21.3■■□□□ 1
TRIM28-212ENST00000597995 MAGI3Q5TCQ9 1506 aa21.3■■□□□ 1
TRIM28-212ENST00000597995 FAM9AQ8IZU1 332 aaPredicted RBP21.29■■□□□ 1
TRIM28-212ENST00000597995 KCNH8Q96L42 1107 aa21.29■■□□□ 1
TRIM28-212ENST00000597995 CFAP43Q8NDM7 1665 aa21.27■■□□□ 1
TRIM28-212ENST00000597995 CSRNP3Q8WYN3 585 aa21.2■□□□□ 0.98
TRIM28-212ENST00000597995 ATP10BO94823 1461 aa21.19■□□□□ 0.98
TRIM28-212ENST00000597995 P3H3Q8IVL6 736 aa21.18■□□□□ 0.98
TRIM28-212ENST00000597995 ARAP3Q8WWN8 1544 aa21.14■□□□□ 0.98
TRIM28-212ENST00000597995 PHLDB1Q86UU1 1377 aa21.13■□□□□ 0.97
TRIM28-212ENST00000597995 SAMD9Q5K651 1589 aa21.13■□□□□ 0.97
TRIM28-212ENST00000597995 ARID3CA6NKF2 412 aa21.12■□□□□ 0.97
TRIM28-212ENST00000597995 ABCA9Q8IUA7 1624 aa21.09■□□□□ 0.97
TRIM28-212ENST00000597995 EEA1Q15075 1411 aa21.09■□□□□ 0.97
TRIM28-212ENST00000597995 RAPGEF6Q8TEU7 1601 aa21.07■□□□□ 0.96
TRIM28-212ENST00000597995 HECW2Q9P2P5 1572 aa21.07■□□□□ 0.96
TRIM28-212ENST00000597995 ILDR1Q86SU0 546 aaPredicted RBP21.05■□□□□ 0.96
TRIM28-212ENST00000597995 NEO1Q92859 1461 aa21.03■□□□□ 0.96
TRIM28-212ENST00000597995 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.03■□□□□ 0.96
TRIM28-212ENST00000597995 HNRNPUL2Q1KMD3 747 aaKnown RBP21.03■□□□□ 0.96
TRIM28-212ENST00000597995 KIF21BO75037 1637 aa21.03■□□□□ 0.96
TRIM28-212ENST00000597995 NUP153P49790 1475 aaKnown RBP21.01■□□□□ 0.95
TRIM28-212ENST00000597995 RAPGEF3O95398 923 aa20.98■□□□□ 0.95
TRIM28-212ENST00000597995 FHOD3Q2V2M9 1422 aa20.96■□□□□ 0.95
TRIM28-212ENST00000597995 PLEKHD1A6NEE1 506 aa20.96■□□□□ 0.95
TRIM28-212ENST00000597995 RANGAP1P46060 587 aaPredicted RBP20.95■□□□□ 0.94
TRIM28-212ENST00000597995 ADAMTSL3P82987 1691 aa20.92■□□□□ 0.94
TRIM28-212ENST00000597995 EFCAB5A4FU69 1503 aa20.9■□□□□ 0.94
TRIM28-212ENST00000597995 PTPRMP28827 1452 aa20.89■□□□□ 0.94
TRIM28-212ENST00000597995 FRMPD1Q5SYB0 1578 aa20.89■□□□□ 0.93
TRIM28-212ENST00000597995 DENND4BO75064 1496 aaPredicted RBP20.87■□□□□ 0.93
TRIM28-212ENST00000597995 AKNAQ7Z591 1439 aa20.87■□□□□ 0.93
TRIM28-212ENST00000597995 ARID4BQ4LE39 1312 aaPredicted RBP20.85■□□□□ 0.93
TRIM28-212ENST00000597995 BCORL1Q5H9F3 1711 aa20.84■□□□□ 0.93
TRIM28-212ENST00000597995 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.84■□□□□ 0.93
TRIM28-212ENST00000597995 FANCAO15360 1455 aa20.84■□□□□ 0.93
TRIM28-212ENST00000597995 CFAP74Q9C0B2 1584 aa20.82■□□□□ 0.92
TRIM28-212ENST00000597995 RICTORQ6R327 1708 aa20.81■□□□□ 0.92
TRIM28-212ENST00000597995 ARHGEF40Q8TER5 1519 aa20.8■□□□□ 0.92
TRIM28-212ENST00000597995 MADDQ8WXG6 1647 aa20.78■□□□□ 0.92
TRIM28-212ENST00000597995 TTC37Q6PGP7 1564 aa20.77■□□□□ 0.92
TRIM28-212ENST00000597995 ZMYM4Q5VZL5 1548 aa20.77■□□□□ 0.92
TRIM28-212ENST00000597995 MAGI2Q86UL8 1455 aa20.75■□□□□ 0.91
TRIM28-212ENST00000597995 CDK13Q14004 1512 aaKnown RBP20.75■□□□□ 0.91
TRIM28-212ENST00000597995 UBTFP17480 764 aaKnown RBP20.75■□□□□ 0.91
TRIM28-212ENST00000597995 CHIC1Q5VXU3 224 aa20.75■□□□□ 0.91
TRIM28-212ENST00000597995 PLCH2O75038 1416 aa20.75■□□□□ 0.91
TRIM28-212ENST00000597995 FMN1Q68DA7 1419 aa20.75■□□□□ 0.91
TRIM28-212ENST00000597995 POGZQ7Z3K3 1410 aa20.74■□□□□ 0.91
TRIM28-212ENST00000597995 ZFYVE16Q7Z3T8 1539 aa20.72■□□□□ 0.91
TRIM28-212ENST00000597995 PCF11O94913 1555 aaKnown RBP20.72■□□□□ 0.91
TRIM28-212ENST00000597995 CDK11AQ9UQ88 783 aaPredicted RBP20.71■□□□□ 0.91
TRIM28-212ENST00000597995 SCAPERQ9BY12 1400 aa20.7■□□□□ 0.9
TRIM28-212ENST00000597995 YEATS2Q9ULM3 1422 aa20.7■□□□□ 0.9
TRIM28-212ENST00000597995 LMTK3Q96Q04 1460 aa20.7■□□□□ 0.9
TRIM28-212ENST00000597995 FBXO41Q8TF61 875 aa20.7■□□□□ 0.9
TRIM28-212ENST00000597995 ATP1B4Q9UN42 357 aaPredicted RBP20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms