RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 FAM69CQ0P6D2 419 aa18.28■□□□□ 0.52
TRIM28-210ENST00000597618 MAPKBP1O60336 1514 aa18.28■□□□□ 0.52
TRIM28-210ENST00000597618 NPM1P06748 294 aaKnown RBP eCLIP18.27■□□□□ 0.52
TRIM28-210ENST00000597618 RUSC2Q8N2Y8 1516 aa18.27■□□□□ 0.51
TRIM28-210ENST00000597618 SUPT5HO00267 1087 aaKnown RBP18.26■□□□□ 0.51
TRIM28-210ENST00000597618 DIP2BQ9P265 1576 aa18.23■□□□□ 0.51
TRIM28-210ENST00000597618 ADCY10Q96PN6 1610 aa18.2■□□□□ 0.5
TRIM28-210ENST00000597618 KDM6BO15054 1643 aa18.17■□□□□ 0.5
TRIM28-210ENST00000597618 KIAA0586Q9BVV6 1533 aa18.13■□□□□ 0.49
TRIM28-210ENST00000597618 KDM4FA0A1W2PPD8 638 aa18.13■□□□□ 0.49
TRIM28-210ENST00000597618 CUL7Q14999 1698 aa18.05■□□□□ 0.48
TRIM28-210ENST00000597618 TSPOAP1O95153 1857 aa18.05■□□□□ 0.48
TRIM28-210ENST00000597618 IGF1RP08069 1367 aa18.04■□□□□ 0.48
TRIM28-210ENST00000597618 PTPRGP23470 1445 aa18.04■□□□□ 0.48
TRIM28-210ENST00000597618 KIF27Q86VH2 1401 aa18.04■□□□□ 0.48
TRIM28-210ENST00000597618 ABCC2Q92887 1545 aa18.01■□□□□ 0.47
TRIM28-210ENST00000597618 CARMIL2Q6F5E8 1435 aa17.98■□□□□ 0.47
TRIM28-210ENST00000597618 TNIKQ9UKE5 1360 aa17.98■□□□□ 0.47
TRIM28-210ENST00000597618 PLB1Q6P1J6 1458 aa17.98■□□□□ 0.47
TRIM28-210ENST00000597618 ASXL2Q76L83 1435 aa17.97■□□□□ 0.47
TRIM28-210ENST00000597618 GLI2P10070 1586 aa17.96■□□□□ 0.47
TRIM28-210ENST00000597618 ILDR1Q86SU0 546 aaPredicted RBP17.96■□□□□ 0.47
TRIM28-210ENST00000597618 TTBK1Q5TCY1 1321 aaPredicted RBP17.95■□□□□ 0.46
TRIM28-210ENST00000597618 UHRF1BP1LA0JNW5 1464 aa17.93■□□□□ 0.46
TRIM28-210ENST00000597618 ADGRL1O94910 1474 aa17.93■□□□□ 0.46
TRIM28-210ENST00000597618 CARMIL1Q5VZK9 1371 aa17.92■□□□□ 0.46
TRIM28-210ENST00000597618 PPRC1Q5VV67 1664 aaKnown RBP17.92■□□□□ 0.46
TRIM28-210ENST00000597618 IQGAP2Q13576 1575 aa17.9■□□□□ 0.46
TRIM28-210ENST00000597618 UACAQ9BZF9 1416 aa17.89■□□□□ 0.46
TRIM28-210ENST00000597618 TEX14Q8IWB6 1497 aa17.86■□□□□ 0.45
TRIM28-210ENST00000597618 EPRSP07814 1512 aaKnown RBP17.86■□□□□ 0.45
TRIM28-210ENST00000597618 DISP1Q96F81 1524 aa17.84■□□□□ 0.45
TRIM28-210ENST00000597618 KDM5BQ9UGL1 1544 aa17.84■□□□□ 0.45
TRIM28-210ENST00000597618 COL17A1Q9UMD9 1497 aaPredicted RBP17.84■□□□□ 0.45
TRIM28-210ENST00000597618 MAP3K4Q9Y6R4 1608 aa17.83■□□□□ 0.45
TRIM28-210ENST00000597618 HECW2Q9P2P5 1572 aa17.8■□□□□ 0.44
TRIM28-210ENST00000597618 UGGT2Q9NYU1 1516 aa17.78■□□□□ 0.44
TRIM28-210ENST00000597618 ZCCHC11Q5TAX3 1644 aaKnown RBP17.77■□□□□ 0.44
TRIM28-210ENST00000597618 WDR7Q9Y4E6 1490 aa17.75■□□□□ 0.43
TRIM28-210ENST00000597618 KIAA0556O60303 1618 aa17.74■□□□□ 0.43
TRIM28-210ENST00000597618 RAPGEF2Q9Y4G8 1499 aa17.73■□□□□ 0.43
TRIM28-210ENST00000597618 MAGI3Q5TCQ9 1506 aa17.68■□□□□ 0.42
TRIM28-210ENST00000597618 CD109Q6YHK3 1445 aa17.67■□□□□ 0.42
TRIM28-210ENST00000597618 CFAP43Q8NDM7 1665 aa17.64■□□□□ 0.41
TRIM28-210ENST00000597618 GOLGA3Q08378 1498 aa17.63■□□□□ 0.41
TRIM28-210ENST00000597618 KCNH8Q96L42 1107 aa17.6■□□□□ 0.41
TRIM28-210ENST00000597618 ABCA8O94911 1581 aa17.6■□□□□ 0.41
TRIM28-210ENST00000597618 CTTNBP2Q8WZ74 1663 aa17.57■□□□□ 0.4
TRIM28-210ENST00000597618 KIF21BO75037 1637 aa17.56■□□□□ 0.4
TRIM28-210ENST00000597618 ARAP3Q8WWN8 1544 aa17.55■□□□□ 0.4
TRIM28-210ENST00000597618 FBXO41Q8TF61 875 aa17.53■□□□□ 0.4
TRIM28-210ENST00000597618 PHLDB1Q86UU1 1377 aa17.5■□□□□ 0.39
TRIM28-210ENST00000597618 FAM9AQ8IZU1 332 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-210ENST00000597618 PTPRMP28827 1452 aa17.48■□□□□ 0.39
TRIM28-210ENST00000597618 PRXQ9BXM0 1461 aa17.45■□□□□ 0.38
TRIM28-210ENST00000597618 ADAMTSL3P82987 1691 aa17.45■□□□□ 0.38
TRIM28-210ENST00000597618 ATP10BO94823 1461 aa17.44■□□□□ 0.38
TRIM28-210ENST00000597618 ABCA9Q8IUA7 1624 aa17.44■□□□□ 0.38
TRIM28-210ENST00000597618 ARID3CA6NKF2 412 aa17.43■□□□□ 0.38
TRIM28-210ENST00000597618 NEO1Q92859 1461 aa17.43■□□□□ 0.38
TRIM28-210ENST00000597618 RAPGEF3O95398 923 aa17.4■□□□□ 0.38
TRIM28-210ENST00000597618 PCF11O94913 1555 aaKnown RBP17.39■□□□□ 0.37
TRIM28-210ENST00000597618 BCORL1Q5H9F3 1711 aa17.37■□□□□ 0.37
TRIM28-210ENST00000597618 ARID4BQ4LE39 1312 aaPredicted RBP17.37■□□□□ 0.37
TRIM28-210ENST00000597618 P3H3Q8IVL6 736 aa17.36■□□□□ 0.37
TRIM28-210ENST00000597618 LMTK3Q96Q04 1460 aa17.36■□□□□ 0.37
TRIM28-210ENST00000597618 FRMPD1Q5SYB0 1578 aa17.36■□□□□ 0.37
TRIM28-210ENST00000597618 MADDQ8WXG6 1647 aa17.36■□□□□ 0.37
TRIM28-210ENST00000597618 RAPGEF6Q8TEU7 1601 aa17.33■□□□□ 0.37
TRIM28-210ENST00000597618 ARHGEF40Q8TER5 1519 aa17.33■□□□□ 0.37
TRIM28-210ENST00000597618 SAMD9Q5K651 1589 aa17.32■□□□□ 0.36
TRIM28-210ENST00000597618 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.31■□□□□ 0.36
TRIM28-210ENST00000597618 HNRNPUL2Q1KMD3 747 aaKnown RBP17.31■□□□□ 0.36
TRIM28-210ENST00000597618 DENND4BO75064 1496 aaPredicted RBP17.29■□□□□ 0.36
TRIM28-210ENST00000597618 NUP153P49790 1475 aaKnown RBP17.28■□□□□ 0.36
TRIM28-210ENST00000597618 RIMS1Q86UR5 1692 aaKnown RBP17.26■□□□□ 0.35
TRIM28-210ENST00000597618 FHOD3Q2V2M9 1422 aa17.26■□□□□ 0.35
TRIM28-210ENST00000597618 POGZQ7Z3K3 1410 aa17.26■□□□□ 0.35
TRIM28-210ENST00000597618 AKNAQ7Z591 1439 aa17.25■□□□□ 0.35
TRIM28-210ENST00000597618 FANCAO15360 1455 aa17.24■□□□□ 0.35
TRIM28-210ENST00000597618 CFAP74Q9C0B2 1584 aa17.24■□□□□ 0.35
TRIM28-210ENST00000597618 RICTORQ6R327 1708 aa17.24■□□□□ 0.35
TRIM28-210ENST00000597618 ZMYM4Q5VZL5 1548 aa17.22■□□□□ 0.35
TRIM28-210ENST00000597618 PLEKHD1A6NEE1 506 aa17.22■□□□□ 0.35
TRIM28-210ENST00000597618 HSPA2P54652 639 aa17.22■□□□□ 0.35
TRIM28-210ENST00000597618 EFCAB5A4FU69 1503 aa17.21■□□□□ 0.34
TRIM28-210ENST00000597618 ZFYVE16Q7Z3T8 1539 aa17.21■□□□□ 0.34
TRIM28-210ENST00000597618 CSRNP3Q8WYN3 585 aa17.2■□□□□ 0.34
TRIM28-210ENST00000597618 MAGI2Q86UL8 1455 aa17.19■□□□□ 0.34
TRIM28-210ENST00000597618 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.18■□□□□ 0.342e-6■□□□□ 10.6
TRIM28-210ENST00000597618 PLPPR3Q6T4P5 718 aa17.17■□□□□ 0.34
TRIM28-210ENST00000597618 CERKQ8TCT0 537 aa17.17■□□□□ 0.34
TRIM28-210ENST00000597618 YEATS2Q9ULM3 1422 aa17.17■□□□□ 0.34
TRIM28-210ENST00000597618 TTC37Q6PGP7 1564 aa17.16■□□□□ 0.34
TRIM28-210ENST00000597618 RANGAP1P46060 587 aaPredicted RBP17.13■□□□□ 0.33
TRIM28-210ENST00000597618 SIGLEC1Q9BZZ2 1709 aa17.13■□□□□ 0.33
TRIM28-210ENST00000597618 HECW1Q76N89 1606 aa17.12■□□□□ 0.33
TRIM28-210ENST00000597618 MLECQ14165 292 aa17.12■□□□□ 0.33
TRIM28-210ENST00000597618 FER1L4A9Z1Z3 1794 aa17.12■□□□□ 0.33
TRIM28-210ENST00000597618 EEA1Q15075 1411 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms