RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 CEP162Q5TB80 1403 aa23.57■■□□□ 1.36
VRK3-212ENST00000596814 CEP170Q5SW79 1584 aa23.54■■□□□ 1.36
VRK3-212ENST00000596814 NUP160Q12769 1436 aa23.53■■□□□ 1.36
VRK3-212ENST00000596814 IQGAP2Q13576 1575 aa23.5■■□□□ 1.35
VRK3-212ENST00000596814 CLIP1P30622 1438 aa23.48■■□□□ 1.35
VRK3-212ENST00000596814 KIAA0586Q9BVV6 1533 aa23.48■■□□□ 1.35
VRK3-212ENST00000596814 RANGAP1P46060 587 aaPredicted RBP23.45■■□□□ 1.34
VRK3-212ENST00000596814 EFCAB5A4FU69 1503 aa23.4■■□□□ 1.34
VRK3-212ENST00000596814 ARHGAP35Q9NRY4 1499 aa23.38■■□□□ 1.33
VRK3-212ENST00000596814 UGGT2Q9NYU1 1516 aa23.38■■□□□ 1.33
VRK3-212ENST00000596814 SAMD9Q5K651 1589 aa23.37■■□□□ 1.33
VRK3-212ENST00000596814 CLASP1Q7Z460 1538 aa23.35■■□□□ 1.33
VRK3-212ENST00000596814 ARAP1Q96P48 1450 aa23.32■■□□□ 1.32
VRK3-212ENST00000596814 SHROOM2Q13796 1616 aa23.28■■□□□ 1.32
VRK3-212ENST00000596814 KIAA0556O60303 1618 aa23.27■■□□□ 1.32
VRK3-212ENST00000596814 JPH4Q96JJ6 628 aa23.26■■□□□ 1.31
VRK3-212ENST00000596814 DISP1Q96F81 1524 aa23.25■■□□□ 1.31
VRK3-212ENST00000596814 FHOD3Q2V2M9 1422 aa23.25■■□□□ 1.31
VRK3-212ENST00000596814 VPS8Q8N3P4 1428 aa23.23■■□□□ 1.31
VRK3-212ENST00000596814 P3H3Q8IVL6 736 aa23.23■■□□□ 1.31
VRK3-212ENST00000596814 OSCARQ8IYS5 282 aa23.23■■□□□ 1.31
VRK3-212ENST00000596814 CARMIL2Q6F5E8 1435 aa23.21■■□□□ 1.31
VRK3-212ENST00000596814 PRG4Q92954 1404 aaPredicted RBP23.19■■□□□ 1.3
VRK3-212ENST00000596814 FMN1Q68DA7 1419 aa23.15■■□□□ 1.3
VRK3-212ENST00000596814 PCF11O94913 1555 aaKnown RBP23.11■■□□□ 1.29
VRK3-212ENST00000596814 ERCC6L2Q5T890 1561 aa23.1■■□□□ 1.29
VRK3-212ENST00000596814 FYCO1Q9BQS8 1478 aa23.06■■□□□ 1.28
VRK3-212ENST00000596814 CASKIN1Q8WXD9 1431 aa23.04■■□□□ 1.28
VRK3-212ENST00000596814 TTBK1Q5TCY1 1321 aaPredicted RBP23.02■■□□□ 1.27
VRK3-212ENST00000596814 PTPRGP23470 1445 aa22.99■■□□□ 1.27
VRK3-212ENST00000596814 HECW1Q76N89 1606 aa22.99■■□□□ 1.27
VRK3-212ENST00000596814 RAPGEF6Q8TEU7 1601 aa22.99■■□□□ 1.27
VRK3-212ENST00000596814 ABCA8O94911 1581 aa22.95■■□□□ 1.26
VRK3-212ENST00000596814 PLB1Q6P1J6 1458 aa22.95■■□□□ 1.26
VRK3-212ENST00000596814 APLP2Q06481 763 aa22.94■■□□□ 1.26
VRK3-212ENST00000596814 LRRIQ1Q96JM4 1722 aa22.94■■□□□ 1.26
VRK3-212ENST00000596814 CFAP43Q8NDM7 1665 aa22.94■■□□□ 1.26
VRK3-212ENST00000596814 ATP1B4Q9UN42 357 aaPredicted RBP22.94■■□□□ 1.26
VRK3-212ENST00000596814 TIAM1Q13009 1591 aa22.92■■□□□ 1.26
VRK3-212ENST00000596814 ARHGEF11O15085 1522 aa22.91■■□□□ 1.26
VRK3-212ENST00000596814 MAP3K1Q13233 1512 aa22.91■■□□□ 1.26
VRK3-212ENST00000596814 NUP153P49790 1475 aaKnown RBP22.89■■□□□ 1.26
VRK3-212ENST00000596814 CCDC18Q5T9S5 1454 aa22.89■■□□□ 1.26
VRK3-212ENST00000596814 UACAQ9BZF9 1416 aa22.88■■□□□ 1.25
VRK3-212ENST00000596814 EPRSP07814 1512 aaKnown RBP22.86■■□□□ 1.25
VRK3-212ENST00000596814 ABCC2Q92887 1545 aa22.85■■□□□ 1.25
VRK3-212ENST00000596814 RIMBP3CA6NJZ7 1639 aa22.85■■□□□ 1.25
VRK3-212ENST00000596814 RIMBP3BA6NNM3 1639 aa22.85■■□□□ 1.25
VRK3-212ENST00000596814 RIMBP3Q9UFD9 1639 aa22.85■■□□□ 1.25
VRK3-212ENST00000596814 CDK13Q14004 1512 aaKnown RBP22.83■■□□□ 1.25
VRK3-212ENST00000596814 PPARGC1BQ86YN6 1023 aaKnown RBP22.81■■□□□ 1.24
VRK3-212ENST00000596814 UHRF1BP1LA0JNW5 1464 aa22.8■■□□□ 1.24
VRK3-212ENST00000596814 LRRC9Q6ZRR7 1453 aa22.78■■□□□ 1.24
VRK3-212ENST00000596814 ARID3CA6NKF2 412 aa22.78■■□□□ 1.24
VRK3-212ENST00000596814 ADCY10Q96PN6 1610 aa22.77■■□□□ 1.24
VRK3-212ENST00000596814 KANK4Q5T7N3 995 aaPredicted RBP22.76■■□□□ 1.23
VRK3-212ENST00000596814 ATP10BO94823 1461 aa22.75■■□□□ 1.23
VRK3-212ENST00000596814 EHBP1L1Q8N3D4 1523 aa22.73■■□□□ 1.23
VRK3-212ENST00000596814 MTUS2Q5JR59 1369 aa22.72■■□□□ 1.23
VRK3-212ENST00000596814 MAGI3Q5TCQ9 1506 aa22.72■■□□□ 1.23
VRK3-212ENST00000596814 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.71■■□□□ 1.23
VRK3-212ENST00000596814 HNRNPUL2Q1KMD3 747 aaKnown RBP22.71■■□□□ 1.23
VRK3-212ENST00000596814 ZCCHC11Q5TAX3 1644 aaKnown RBP22.71■■□□□ 1.23
VRK3-212ENST00000596814 KDM5BQ9UGL1 1544 aa22.7■■□□□ 1.22
VRK3-212ENST00000596814 CDK11AQ9UQ88 783 aaPredicted RBP22.67■■□□□ 1.22
VRK3-212ENST00000596814 SUPT6HQ7KZ85 1726 aaKnown RBP22.66■■□□□ 1.22
VRK3-212ENST00000596814 TROQ12816 1431 aaPredicted RBP22.64■■□□□ 1.21
VRK3-212ENST00000596814 CYB5RLQ6IPT4 315 aa22.62■■□□□ 1.21
VRK3-212ENST00000596814 PLEKHD1A6NEE1 506 aa22.59■■□□□ 1.21
VRK3-212ENST00000596814 NCOA2Q15596 1464 aa22.59■■□□□ 1.21
VRK3-212ENST00000596814 KIF14Q15058 1648 aa22.57■■□□□ 1.2
VRK3-212ENST00000596814 NPM1P06748 294 aaKnown RBP eCLIP22.54■■□□□ 1.2
VRK3-212ENST00000596814 PHLDB1Q86UU1 1377 aa22.53■■□□□ 1.2
VRK3-212ENST00000596814 TRIM26Q12899 539 aaPredicted RBP22.52■■□□□ 1.2
VRK3-212ENST00000596814 WDR7Q9Y4E6 1490 aa22.51■■□□□ 1.19
VRK3-212ENST00000596814 ASXL2Q76L83 1435 aa22.49■■□□□ 1.19
VRK3-212ENST00000596814 MYOM3Q5VTT5 1437 aa22.47■■□□□ 1.19
VRK3-212ENST00000596814 MAPKBP1O60336 1514 aa22.46■■□□□ 1.19
VRK3-212ENST00000596814 RRBP1Q9P2E9 1410 aaKnown RBP22.46■■□□□ 1.19
VRK3-212ENST00000596814 ABCC10Q5T3U5 1492 aa22.46■■□□□ 1.19
VRK3-212ENST00000596814 ITSN2Q9NZM3 1697 aa22.45■■□□□ 1.19
VRK3-212ENST00000596814 DNAJC5Q9H3Z4 198 aa22.45■■□□□ 1.18
VRK3-212ENST00000596814 CCNB3Q8WWL7 1395 aa22.43■■□□□ 1.18
VRK3-212ENST00000596814 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.43■■□□□ 1.18
VRK3-212ENST00000596814 TTC37Q6PGP7 1564 aa22.43■■□□□ 1.18
VRK3-212ENST00000596814 FGD6Q6ZV73 1430 aa22.42■■□□□ 1.18
VRK3-212ENST00000596814 CDC42BPAQ5VT25 1732 aa22.42■■□□□ 1.18
VRK3-212ENST00000596814 KCNH8Q96L42 1107 aa22.4■■□□□ 1.18
VRK3-212ENST00000596814 GPATCH8Q9UKJ3 1502 aaKnown RBP22.39■■□□□ 1.17
VRK3-212ENST00000596814 MYO5CQ9NQX4 1742 aa22.38■■□□□ 1.17
VRK3-212ENST00000596814 MIA2Q96PC5 1412 aa22.38■■□□□ 1.17
VRK3-212ENST00000596814 PREX2Q70Z35 1606 aa22.37■■□□□ 1.17
VRK3-212ENST00000596814 PTPN23Q9H3S7 1636 aa22.37■■□□□ 1.17
VRK3-212ENST00000596814 PCGF6Q9BYE7 350 aa22.37■■□□□ 1.17
VRK3-212ENST00000596814 ABCA9Q8IUA7 1624 aa22.36■■□□□ 1.17
VRK3-212ENST00000596814 CDC42BPBQ9Y5S2 1711 aa22.33■■□□□ 1.16
VRK3-212ENST00000596814 TCOF1Q13428 1488 aaKnown RBP22.32■■□□□ 1.16
VRK3-212ENST00000596814 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.31■■□□□ 1.16
VRK3-212ENST00000596814 FAM50AQ14320 339 aaKnown RBP22.3■■□□□ 1.16
VRK3-212ENST00000596814 CFDP1Q9UEE9 299 aaPredicted RBP22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms