RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 PRG4Q92954 1404 aaPredicted RBP18.3■□□□□ 0.52
LIG1-213ENST00000596672 CUL7Q14999 1698 aa18.25■□□□□ 0.51
LIG1-213ENST00000596672 CARMIL1Q5VZK9 1371 aa18.22■□□□□ 0.51
LIG1-213ENST00000596672 KIAA0586Q9BVV6 1533 aa18.22■□□□□ 0.51
LIG1-213ENST00000596672 ADCY10Q96PN6 1610 aa18.12■□□□□ 0.49
LIG1-213ENST00000596672 KIF13AQ9H1H9 1805 aa18.1■□□□□ 0.49
LIG1-213ENST00000596672 RAPGEF2Q9Y4G8 1499 aa18.06■□□□□ 0.48
LIG1-213ENST00000596672 IQGAP2Q13576 1575 aa18.05■□□□□ 0.48
LIG1-213ENST00000596672 DISP1Q96F81 1524 aa18.05■□□□□ 0.48
LIG1-213ENST00000596672 PTPRGP23470 1445 aa18.01■□□□□ 0.47
LIG1-213ENST00000596672 TTBK1Q5TCY1 1321 aaPredicted RBP18■□□□□ 0.47
LIG1-213ENST00000596672 MAPKBP1O60336 1514 aa17.98■□□□□ 0.47
LIG1-213ENST00000596672 TNIKQ9UKE5 1360 aa17.98■□□□□ 0.47
LIG1-213ENST00000596672 PRXQ9BXM0 1461 aa17.98■□□□□ 0.47
LIG1-213ENST00000596672 UGGT2Q9NYU1 1516 aa17.98■□□□□ 0.47
LIG1-213ENST00000596672 ABCC10Q5T3U5 1492 aa17.97■□□□□ 0.47
LIG1-213ENST00000596672 DIP2BQ9P265 1576 aa17.96■□□□□ 0.46
LIG1-213ENST00000596672 CARMIL2Q6F5E8 1435 aa17.93■□□□□ 0.46
LIG1-213ENST00000596672 FAM69CQ0P6D2 419 aa17.93■□□□□ 0.46
LIG1-213ENST00000596672 KIAA0556O60303 1618 aa17.91■□□□□ 0.46
LIG1-213ENST00000596672 CTTNBP2Q8WZ74 1663 aa17.91■□□□□ 0.46
LIG1-213ENST00000596672 ABCC2Q92887 1545 aa17.9■□□□□ 0.46
LIG1-213ENST00000596672 NPM1P06748 294 aaKnown RBP eCLIP17.9■□□□□ 0.46
LIG1-213ENST00000596672 UHRF1BP1LA0JNW5 1464 aa17.88■□□□□ 0.45
LIG1-213ENST00000596672 UACAQ9BZF9 1416 aa17.88■□□□□ 0.45
LIG1-213ENST00000596672 TSPOAP1O95153 1857 aa17.85■□□□□ 0.45
LIG1-213ENST00000596672 ASXL2Q76L83 1435 aa17.84■□□□□ 0.45
LIG1-213ENST00000596672 CSRNP3Q8WYN3 585 aa17.84■□□□□ 0.45
LIG1-213ENST00000596672 KDM5BQ9UGL1 1544 aa17.83■□□□□ 0.45
LIG1-213ENST00000596672 PLB1Q6P1J6 1458 aa17.82■□□□□ 0.44
LIG1-213ENST00000596672 PPRC1Q5VV67 1664 aaKnown RBP17.81■□□□□ 0.44
LIG1-213ENST00000596672 ZCCHC11Q5TAX3 1644 aaKnown RBP17.8■□□□□ 0.44
LIG1-213ENST00000596672 ABCA8O94911 1581 aa17.78■□□□□ 0.44
LIG1-213ENST00000596672 GLI2P10070 1586 aa17.76■□□□□ 0.43
LIG1-213ENST00000596672 FAM9AQ8IZU1 332 aaPredicted RBP17.76■□□□□ 0.43
LIG1-213ENST00000596672 P3H3Q8IVL6 736 aa17.75■□□□□ 0.43
LIG1-213ENST00000596672 EPRSP07814 1512 aaKnown RBP17.74■□□□□ 0.43
LIG1-213ENST00000596672 CHIC1Q5VXU3 224 aa17.74■□□□□ 0.43
LIG1-213ENST00000596672 GOLGA3Q08378 1498 aa17.73■□□□□ 0.43
LIG1-213ENST00000596672 COL17A1Q9UMD9 1497 aaPredicted RBP17.71■□□□□ 0.43
LIG1-213ENST00000596672 SAMD9Q5K651 1589 aa17.7■□□□□ 0.42
LIG1-213ENST00000596672 KDM6BO15054 1643 aa17.69■□□□□ 0.42
LIG1-213ENST00000596672 MAP3K4Q9Y6R4 1608 aa17.69■□□□□ 0.42
LIG1-213ENST00000596672 EEA1Q15075 1411 aa17.69■□□□□ 0.42
LIG1-213ENST00000596672 ARID3CA6NKF2 412 aa17.66■□□□□ 0.42
LIG1-213ENST00000596672 WDR7Q9Y4E6 1490 aa17.66■□□□□ 0.42
LIG1-213ENST00000596672 ATP10BO94823 1461 aa17.64■□□□□ 0.41
LIG1-213ENST00000596672 KIF21BO75037 1637 aa17.63■□□□□ 0.41
LIG1-213ENST00000596672 RANGAP1P46060 587 aaPredicted RBP17.62■□□□□ 0.41
LIG1-213ENST00000596672 FHOD3Q2V2M9 1422 aa17.61■□□□□ 0.41
LIG1-213ENST00000596672 KCNH8Q96L42 1107 aa17.6■□□□□ 0.41
LIG1-213ENST00000596672 EHMT2Q96KQ7 1210 aa17.59■□□□□ 0.41
LIG1-213ENST00000596672 KDM4FA0A1W2PPD8 638 aa17.58■□□□□ 0.4
LIG1-213ENST00000596672 AEBP2Q6ZN18 517 aaPredicted RBP17.57■□□□□ 0.4
LIG1-213ENST00000596672 RAPGEF6Q8TEU7 1601 aa17.57■□□□□ 0.4
LIG1-213ENST00000596672 NUP153P49790 1475 aaKnown RBP17.56■□□□□ 0.4
LIG1-213ENST00000596672 CD109Q6YHK3 1445 aa17.54■□□□□ 0.4
LIG1-213ENST00000596672 CFAP43Q8NDM7 1665 aa17.53■□□□□ 0.4
LIG1-213ENST00000596672 MAGI3Q5TCQ9 1506 aa17.52■□□□□ 0.4
LIG1-213ENST00000596672 TEX14Q8IWB6 1497 aa17.5■□□□□ 0.39
LIG1-213ENST00000596672 ABCA9Q8IUA7 1624 aa17.47■□□□□ 0.39
LIG1-213ENST00000596672 EFCAB5A4FU69 1503 aa17.47■□□□□ 0.39
LIG1-213ENST00000596672 ARHGAP35Q9NRY4 1499 aa17.46■□□□□ 0.39
LIG1-213ENST00000596672 UBTFP17480 764 aaKnown RBP17.44■□□□□ 0.38
LIG1-213ENST00000596672 CDK13Q14004 1512 aaKnown RBP17.42■□□□□ 0.38
LIG1-213ENST00000596672 ADGRL1O94910 1474 aa17.39■□□□□ 0.37
LIG1-213ENST00000596672 ARAP3Q8WWN8 1544 aa17.39■□□□□ 0.37
LIG1-213ENST00000596672 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.39■□□□□ 0.37
LIG1-213ENST00000596672 HNRNPUL2Q1KMD3 747 aaKnown RBP17.39■□□□□ 0.37
LIG1-213ENST00000596672 LRRIQ1Q96JM4 1722 aa17.37■□□□□ 0.37
LIG1-213ENST00000596672 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.36■□□□□ 0.37
LIG1-213ENST00000596672 RAPGEF3O95398 923 aa17.35■□□□□ 0.37
LIG1-213ENST00000596672 FRMPD1Q5SYB0 1578 aa17.35■□□□□ 0.37
LIG1-213ENST00000596672 TTC37Q6PGP7 1564 aa17.35■□□□□ 0.37
LIG1-213ENST00000596672 PLEKHD1A6NEE1 506 aa17.33■□□□□ 0.36
LIG1-213ENST00000596672 NEO1Q92859 1461 aa17.31■□□□□ 0.36
LIG1-213ENST00000596672 FMN1Q68DA7 1419 aa17.29■□□□□ 0.36
LIG1-213ENST00000596672 KIF14Q15058 1648 aa17.27■□□□□ 0.36
LIG1-213ENST00000596672 HECW1Q76N89 1606 aa17.27■□□□□ 0.36
LIG1-213ENST00000596672 PHLDB1Q86UU1 1377 aa17.27■□□□□ 0.35
LIG1-213ENST00000596672 ATP1B4Q9UN42 357 aaPredicted RBP17.26■□□□□ 0.35
LIG1-213ENST00000596672 RICTORQ6R327 1708 aa17.26■□□□□ 0.35
LIG1-213ENST00000596672 AKNAQ7Z591 1439 aa17.25■□□□□ 0.35
LIG1-213ENST00000596672 FANCAO15360 1455 aa17.24■□□□□ 0.35
LIG1-213ENST00000596672 PCF11O94913 1555 aaKnown RBP17.23■□□□□ 0.35
LIG1-213ENST00000596672 SIGLEC1Q9BZZ2 1709 aa17.22■□□□□ 0.35
LIG1-213ENST00000596672 PLCH2O75038 1416 aa17.21■□□□□ 0.35
LIG1-213ENST00000596672 TROQ12816 1431 aaPredicted RBP17.2■□□□□ 0.34
LIG1-213ENST00000596672 CASKIN1Q8WXD9 1431 aa17.2■□□□□ 0.34
LIG1-213ENST00000596672 DENND4BO75064 1496 aaPredicted RBP17.19■□□□□ 0.34
LIG1-213ENST00000596672 ADAMTSL3P82987 1691 aa17.18■□□□□ 0.34
LIG1-213ENST00000596672 CLIP1P30622 1438 aa17.17■□□□□ 0.34
LIG1-213ENST00000596672 YEATS2Q9ULM3 1422 aa17.17■□□□□ 0.34
LIG1-213ENST00000596672 MYO5CQ9NQX4 1742 aa17.16■□□□□ 0.34
LIG1-213ENST00000596672 ZMYM4Q5VZL5 1548 aa17.15■□□□□ 0.34
LIG1-213ENST00000596672 ARHGEF40Q8TER5 1519 aa17.15■□□□□ 0.34
LIG1-213ENST00000596672 SCAPERQ9BY12 1400 aa17.14■□□□□ 0.33
LIG1-213ENST00000596672 CDC42BPBQ9Y5S2 1711 aa17.14■□□□□ 0.33
LIG1-213ENST00000596672 CFAP74Q9C0B2 1584 aa17.14■□□□□ 0.33
LIG1-213ENST00000596672 BCORL1Q5H9F3 1711 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms