RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-208ENST00000595758 RIMBP3BA6NNM3 1639 aa23.83■■□□□ 1.41
LIG1-208ENST00000595758 RIMBP3Q9UFD9 1639 aa23.83■■□□□ 1.41
LIG1-208ENST00000595758 KIAA0586Q9BVV6 1533 aa23.82■■□□□ 1.4
LIG1-208ENST00000595758 JPH4Q96JJ6 628 aa23.81■■□□□ 1.4
LIG1-208ENST00000595758 SHROOM2Q13796 1616 aa23.75■■□□□ 1.39
LIG1-208ENST00000595758 PRG4Q92954 1404 aaPredicted RBP23.72■■□□□ 1.39
LIG1-208ENST00000595758 CYB5RLQ6IPT4 315 aa23.71■■□□□ 1.39
LIG1-208ENST00000595758 ARAP1Q96P48 1450 aa23.68■■□□□ 1.38
LIG1-208ENST00000595758 IQGAP2Q13576 1575 aa23.68■■□□□ 1.38
LIG1-208ENST00000595758 ERCC6L2Q5T890 1561 aa23.68■■□□□ 1.38
LIG1-208ENST00000595758 KIF21BO75037 1637 aa23.64■■□□□ 1.38
LIG1-208ENST00000595758 EHMT2Q96KQ7 1210 aa23.6■■□□□ 1.37
LIG1-208ENST00000595758 CTTNBP2Q8WZ74 1663 aa23.6■■□□□ 1.37
LIG1-208ENST00000595758 CARMIL2Q6F5E8 1435 aa23.58■■□□□ 1.36
LIG1-208ENST00000595758 UGGT2Q9NYU1 1516 aa23.57■■□□□ 1.36
LIG1-208ENST00000595758 GOLGA3Q08378 1498 aa23.56■■□□□ 1.36
LIG1-208ENST00000595758 UBTFP17480 764 aaKnown RBP23.55■■□□□ 1.36
LIG1-208ENST00000595758 DISP1Q96F81 1524 aa23.52■■□□□ 1.36
LIG1-208ENST00000595758 TNIKQ9UKE5 1360 aa23.49■■□□□ 1.35
LIG1-208ENST00000595758 PTPRGP23470 1445 aa23.48■■□□□ 1.35
LIG1-208ENST00000595758 TTBK1Q5TCY1 1321 aaPredicted RBP23.47■■□□□ 1.35
LIG1-208ENST00000595758 RANGAP1P46060 587 aaPredicted RBP23.45■■□□□ 1.34
LIG1-208ENST00000595758 KIAA0556O60303 1618 aa23.44■■□□□ 1.34
LIG1-208ENST00000595758 P3H3Q8IVL6 736 aa23.39■■□□□ 1.33
LIG1-208ENST00000595758 SAMD9Q5K651 1589 aa23.34■■□□□ 1.33
LIG1-208ENST00000595758 NPM1P06748 294 aaKnown RBP eCLIP23.3■■□□□ 1.32
LIG1-208ENST00000595758 UACAQ9BZF9 1416 aa23.3■■□□□ 1.32
LIG1-208ENST00000595758 EFCAB5A4FU69 1503 aa23.28■■□□□ 1.32
LIG1-208ENST00000595758 ADCY10Q96PN6 1610 aa23.28■■□□□ 1.32
LIG1-208ENST00000595758 FHOD3Q2V2M9 1422 aa23.25■■□□□ 1.31
LIG1-208ENST00000595758 UHRF1BP1LA0JNW5 1464 aa23.25■■□□□ 1.31
LIG1-208ENST00000595758 LOC105371045A0A1W2PR82 267 aa23.25■■□□□ 1.31
LIG1-208ENST00000595758 PLB1Q6P1J6 1458 aa23.23■■□□□ 1.31
LIG1-208ENST00000595758 ABCC2Q92887 1545 aa23.23■■□□□ 1.31
LIG1-208ENST00000595758 ARHGAP35Q9NRY4 1499 aa23.21■■□□□ 1.31
LIG1-208ENST00000595758 ABCA8O94911 1581 aa23.18■■□□□ 1.3
LIG1-208ENST00000595758 TRHP20396 242 aaPredicted RBP23.18■■□□□ 1.3
LIG1-208ENST00000595758 CLIP1P30622 1438 aa23.16■■□□□ 1.3
LIG1-208ENST00000595758 KDM5BQ9UGL1 1544 aa23.13■■□□□ 1.29
LIG1-208ENST00000595758 MAPKBP1O60336 1514 aa23.11■■□□□ 1.29
LIG1-208ENST00000595758 FMN1Q68DA7 1419 aa23.1■■□□□ 1.29
LIG1-208ENST00000595758 RAPGEF6Q8TEU7 1601 aa23.08■■□□□ 1.29
LIG1-208ENST00000595758 ARID3CA6NKF2 412 aa23.08■■□□□ 1.29
LIG1-208ENST00000595758 CEP162Q5TB80 1403 aa23.08■■□□□ 1.28
LIG1-208ENST00000595758 ZCCHC11Q5TAX3 1644 aaKnown RBP23.06■■□□□ 1.28
LIG1-208ENST00000595758 ASXL2Q76L83 1435 aa23.06■■□□□ 1.28
LIG1-208ENST00000595758 ATP10BO94823 1461 aa23.04■■□□□ 1.28
LIG1-208ENST00000595758 NUP153P49790 1475 aaKnown RBP23.03■■□□□ 1.28
LIG1-208ENST00000595758 ATP1B4Q9UN42 357 aaPredicted RBP23.02■■□□□ 1.28
LIG1-208ENST00000595758 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.01■■□□□ 1.27
LIG1-208ENST00000595758 FAM69CQ0P6D2 419 aa23.01■■□□□ 1.27
LIG1-208ENST00000595758 HNRNPUL2Q1KMD3 747 aaKnown RBP23.01■■□□□ 1.27
LIG1-208ENST00000595758 ABCC10Q5T3U5 1492 aa23■■□□□ 1.27
LIG1-208ENST00000595758 WDR7Q9Y4E6 1490 aa22.95■■□□□ 1.26
LIG1-208ENST00000595758 CASKIN1Q8WXD9 1431 aa22.94■■□□□ 1.26
LIG1-208ENST00000595758 DIP2BQ9P265 1576 aa22.93■■□□□ 1.26
LIG1-208ENST00000595758 HECW1Q76N89 1606 aa22.93■■□□□ 1.26
LIG1-208ENST00000595758 KCNH8Q96L42 1107 aa22.92■■□□□ 1.26
LIG1-208ENST00000595758 KIF13AQ9H1H9 1805 aa22.92■■□□□ 1.26
LIG1-208ENST00000595758 PLEKHD1A6NEE1 506 aa22.9■■□□□ 1.26
LIG1-208ENST00000595758 EPRSP07814 1512 aaKnown RBP22.9■■□□□ 1.26
LIG1-208ENST00000595758 PCF11O94913 1555 aaKnown RBP22.89■■□□□ 1.25
LIG1-208ENST00000595758 CDK13Q14004 1512 aaKnown RBP22.88■■□□□ 1.25
LIG1-208ENST00000595758 FYCO1Q9BQS8 1478 aa22.87■■□□□ 1.25
LIG1-208ENST00000595758 GLI2P10070 1586 aa22.86■■□□□ 1.25
LIG1-208ENST00000595758 CDK11AQ9UQ88 783 aaPredicted RBP22.85■■□□□ 1.25
LIG1-208ENST00000595758 CCDC18Q5T9S5 1454 aa22.81■■□□□ 1.24
LIG1-208ENST00000595758 VPS8Q8N3P4 1428 aa22.79■■□□□ 1.24
LIG1-208ENST00000595758 LRRIQ1Q96JM4 1722 aa22.77■■□□□ 1.24
LIG1-208ENST00000595758 MAP3K4Q9Y6R4 1608 aa22.75■■□□□ 1.23
LIG1-208ENST00000595758 CD109Q6YHK3 1445 aa22.74■■□□□ 1.23
LIG1-208ENST00000595758 TSPOAP1O95153 1857 aa22.74■■□□□ 1.23
LIG1-208ENST00000595758 TROQ12816 1431 aaPredicted RBP22.73■■□□□ 1.23
LIG1-208ENST00000595758 CFAP43Q8NDM7 1665 aa22.71■■□□□ 1.23
LIG1-208ENST00000595758 ABCA9Q8IUA7 1624 aa22.69■■□□□ 1.22
LIG1-208ENST00000595758 TEX14Q8IWB6 1497 aa22.67■■□□□ 1.22
LIG1-208ENST00000595758 MAGI3Q5TCQ9 1506 aa22.67■■□□□ 1.22
LIG1-208ENST00000595758 PPRC1Q5VV67 1664 aaKnown RBP22.66■■□□□ 1.22
LIG1-208ENST00000595758 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.65■■□□□ 1.22
LIG1-208ENST00000595758 MTUS2Q5JR59 1369 aa22.63■■□□□ 1.21
LIG1-208ENST00000595758 KIF14Q15058 1648 aa22.62■■□□□ 1.21
LIG1-208ENST00000595758 TTC37Q6PGP7 1564 aa22.61■■□□□ 1.21
LIG1-208ENST00000595758 APLP2Q06481 763 aa22.59■■□□□ 1.21
LIG1-208ENST00000595758 TIAM1Q13009 1591 aa22.58■■□□□ 1.2
LIG1-208ENST00000595758 MAP3K1Q13233 1512 aa22.56■■□□□ 1.2
LIG1-208ENST00000595758 PLCH2O75038 1416 aa22.56■■□□□ 1.2
LIG1-208ENST00000595758 KDM6BO15054 1643 aa22.54■■□□□ 1.2
LIG1-208ENST00000595758 PHLDB1Q86UU1 1377 aa22.54■■□□□ 1.2
LIG1-208ENST00000595758 EHBP1L1Q8N3D4 1523 aa22.54■■□□□ 1.2
LIG1-208ENST00000595758 NEO1Q92859 1461 aa22.54■■□□□ 1.2
LIG1-208ENST00000595758 KANK4Q5T7N3 995 aaPredicted RBP22.51■■□□□ 1.19
LIG1-208ENST00000595758 EFCAB2Q5VUJ9 269 aa22.51■■□□□ 1.19
LIG1-208ENST00000595758 FANCAO15360 1455 aa22.51■■□□□ 1.19
LIG1-208ENST00000595758 LRRC9Q6ZRR7 1453 aa22.51■■□□□ 1.19
LIG1-208ENST00000595758 COL17A1Q9UMD9 1497 aaPredicted RBP22.51■■□□□ 1.19
LIG1-208ENST00000595758 MYO5CQ9NQX4 1742 aa22.49■■□□□ 1.19
LIG1-208ENST00000595758 ARAP3Q8WWN8 1544 aa22.48■■□□□ 1.19
LIG1-208ENST00000595758 CCNB3Q8WWL7 1395 aa22.48■■□□□ 1.19
LIG1-208ENST00000595758 AKNAQ7Z591 1439 aa22.48■■□□□ 1.19
LIG1-208ENST00000595758 ARHGAP5Q13017 1502 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms