RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 PRXQ9BXM0 1461 aa32.6■■■□□ 2.81
LSM4-203ENST00000593829 FAM9AQ8IZU1 332 aaPredicted RBP32.58■■■□□ 2.81
LSM4-203ENST00000593829 KIAA0586Q9BVV6 1533 aa32.58■■■□□ 2.81
LSM4-203ENST00000593829 SHROOM2Q13796 1616 aa32.54■■■□□ 2.8
LSM4-203ENST00000593829 JPH4Q96JJ6 628 aa32.53■■■□□ 2.8
LSM4-203ENST00000593829 ARAP1Q96P48 1450 aa32.45■■■□□ 2.79
LSM4-203ENST00000593829 PRG4Q92954 1404 aaPredicted RBP32.44■■■□□ 2.78
LSM4-203ENST00000593829 CYB5RLQ6IPT4 315 aa32.43■■■□□ 2.78
LSM4-203ENST00000593829 ERCC6L2Q5T890 1561 aa32.42■■■□□ 2.78
LSM4-203ENST00000593829 IQGAP2Q13576 1575 aa32.41■■■□□ 2.78
LSM4-203ENST00000593829 KIF21BO75037 1637 aa32.32■■■□□ 2.76
LSM4-203ENST00000593829 CTTNBP2Q8WZ74 1663 aa32.32■■■□□ 2.76
LSM4-203ENST00000593829 UGGT2Q9NYU1 1516 aa32.24■■■□□ 2.75
LSM4-203ENST00000593829 CARMIL2Q6F5E8 1435 aa32.24■■■□□ 2.75
LSM4-203ENST00000593829 DISP1Q96F81 1524 aa32.17■■■□□ 2.74
LSM4-203ENST00000593829 GOLGA3Q08378 1498 aa32.15■■■□□ 2.74
LSM4-203ENST00000593829 EHMT2Q96KQ7 1210 aa32.14■■■□□ 2.74
LSM4-203ENST00000593829 TNIKQ9UKE5 1360 aa32.11■■■□□ 2.73
LSM4-203ENST00000593829 UBTFP17480 764 aaKnown RBP32.1■■■□□ 2.73
LSM4-203ENST00000593829 KIAA0556O60303 1618 aa32.09■■■□□ 2.73
LSM4-203ENST00000593829 PTPRGP23470 1445 aa32.08■■■□□ 2.73
LSM4-203ENST00000593829 TTBK1Q5TCY1 1321 aaPredicted RBP32.04■■■□□ 2.72
LSM4-203ENST00000593829 RANGAP1P46060 587 aaPredicted RBP31.97■■■□□ 2.71
LSM4-203ENST00000593829 SAMD9Q5K651 1589 aa31.93■■■□□ 2.7
LSM4-203ENST00000593829 P3H3Q8IVL6 736 aa31.92■■■□□ 2.7
LSM4-203ENST00000593829 ADCY10Q96PN6 1610 aa31.89■■■□□ 2.7
LSM4-203ENST00000593829 UACAQ9BZF9 1416 aa31.87■■■□□ 2.69
LSM4-203ENST00000593829 NPM1P06748 294 aaKnown RBP eCLIP31.85■■■□□ 2.69
LSM4-203ENST00000593829 EFCAB5A4FU69 1503 aa31.84■■■□□ 2.69
LSM4-203ENST00000593829 UHRF1BP1LA0JNW5 1464 aa31.83■■■□□ 2.69
LSM4-203ENST00000593829 ABCC2Q92887 1545 aa31.79■■■□□ 2.68
LSM4-203ENST00000593829 FHOD3Q2V2M9 1422 aa31.77■■■□□ 2.68
LSM4-203ENST00000593829 PLB1Q6P1J6 1458 aa31.77■■■□□ 2.68
LSM4-203ENST00000593829 ABCA8O94911 1581 aa31.73■■■□□ 2.67
LSM4-203ENST00000593829 TRHP20396 242 aaPredicted RBP31.72■■■□□ 2.67
LSM4-203ENST00000593829 ARHGAP35Q9NRY4 1499 aa31.71■■■□□ 2.67
LSM4-203ENST00000593829 MAPKBP1O60336 1514 aa31.67■■■□□ 2.66
LSM4-203ENST00000593829 KDM5BQ9UGL1 1544 aa31.67■■■□□ 2.66
LSM4-203ENST00000593829 LOC105371045A0A1W2PR82 267 aa31.64■■■□□ 2.66
LSM4-203ENST00000593829 CLIP1P30622 1438 aa31.6■■■□□ 2.65
LSM4-203ENST00000593829 RAPGEF6Q8TEU7 1601 aa31.6■■■□□ 2.65
LSM4-203ENST00000593829 ZCCHC11Q5TAX3 1644 aaKnown RBP31.58■■■□□ 2.65
LSM4-203ENST00000593829 FMN1Q68DA7 1419 aa31.57■■■□□ 2.64
LSM4-203ENST00000593829 ASXL2Q76L83 1435 aa31.55■■■□□ 2.64
LSM4-203ENST00000593829 ABCC10Q5T3U5 1492 aa31.51■■■□□ 2.64
LSM4-203ENST00000593829 ARID3CA6NKF2 412 aa31.5■■■□□ 2.63
LSM4-203ENST00000593829 NUP153P49790 1475 aaKnown RBP31.49■■■□□ 2.63
LSM4-203ENST00000593829 ATP10BO94823 1461 aa31.49■■■□□ 2.63
LSM4-203ENST00000593829 CEP162Q5TB80 1403 aa31.49■■■□□ 2.63
LSM4-203ENST00000593829 FAM69CQ0P6D2 419 aa31.46■■■□□ 2.63
LSM4-203ENST00000593829 DIP2BQ9P265 1576 aa31.44■■■□□ 2.62
LSM4-203ENST00000593829 KIF13AQ9H1H9 1805 aa31.43■■■□□ 2.62
LSM4-203ENST00000593829 WDR7Q9Y4E6 1490 aa31.41■■■□□ 2.62
LSM4-203ENST00000593829 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.41■■■□□ 2.62
LSM4-203ENST00000593829 HNRNPUL2Q1KMD3 747 aaKnown RBP31.41■■■□□ 2.62
LSM4-203ENST00000593829 ATP1B4Q9UN42 357 aaPredicted RBP31.39■■■□□ 2.62
LSM4-203ENST00000593829 HECW1Q76N89 1606 aa31.37■■■□□ 2.61
LSM4-203ENST00000593829 EPRSP07814 1512 aaKnown RBP31.35■■■□□ 2.61
LSM4-203ENST00000593829 CASKIN1Q8WXD9 1431 aa31.33■■■□□ 2.61
LSM4-203ENST00000593829 GLI2P10070 1586 aa31.32■■■□□ 2.6
LSM4-203ENST00000593829 KCNH8Q96L42 1107 aa31.31■■■□□ 2.6
LSM4-203ENST00000593829 PCF11O94913 1555 aaKnown RBP31.29■■■□□ 2.6
LSM4-203ENST00000593829 CDK13Q14004 1512 aaKnown RBP31.28■■■□□ 2.6
LSM4-203ENST00000593829 PLEKHD1A6NEE1 506 aa31.27■■■□□ 2.6
LSM4-203ENST00000593829 FYCO1Q9BQS8 1478 aa31.25■■■□□ 2.59
LSM4-203ENST00000593829 CDK11AQ9UQ88 783 aaPredicted RBP31.19■■■□□ 2.58
LSM4-203ENST00000593829 CCDC18Q5T9S5 1454 aa31.19■■■□□ 2.58
LSM4-203ENST00000593829 MAP3K4Q9Y6R4 1608 aa31.17■■■□□ 2.58
LSM4-203ENST00000593829 LRRIQ1Q96JM4 1722 aa31.17■■■□□ 2.58
LSM4-203ENST00000593829 TSPOAP1O95153 1857 aa31.16■■■□□ 2.58
LSM4-203ENST00000593829 CD109Q6YHK3 1445 aa31.12■■■□□ 2.57
LSM4-203ENST00000593829 CFAP43Q8NDM7 1665 aa31.12■■■□□ 2.57
LSM4-203ENST00000593829 VPS8Q8N3P4 1428 aa31.1■■■□□ 2.57
LSM4-203ENST00000593829 ABCA9Q8IUA7 1624 aa31.08■■■□□ 2.57
LSM4-203ENST00000593829 PPRC1Q5VV67 1664 aaKnown RBP31.07■■■□□ 2.56
LSM4-203ENST00000593829 TROQ12816 1431 aaPredicted RBP31.06■■■□□ 2.56
LSM4-203ENST00000593829 TEX14Q8IWB6 1497 aa31.05■■■□□ 2.56
LSM4-203ENST00000593829 MAGI3Q5TCQ9 1506 aa31.03■■■□□ 2.56
LSM4-203ENST00000593829 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31■■■□□ 2.554e-7■■■□□ 15.9
LSM4-203ENST00000593829 KIF14Q15058 1648 aa30.96■■■□□ 2.55
LSM4-203ENST00000593829 TTC37Q6PGP7 1564 aa30.95■■■□□ 2.54
LSM4-203ENST00000593829 KDM6BO15054 1643 aa30.91■■■□□ 2.54
LSM4-203ENST00000593829 MTUS2Q5JR59 1369 aa30.89■■■□□ 2.54
LSM4-203ENST00000593829 TIAM1Q13009 1591 aa30.85■■■□□ 2.53
LSM4-203ENST00000593829 PHLDB1Q86UU1 1377 aa30.84■■■□□ 2.53
LSM4-203ENST00000593829 PLCH2O75038 1416 aa30.84■■■□□ 2.53
LSM4-203ENST00000593829 NEO1Q92859 1461 aa30.84■■■□□ 2.53
LSM4-203ENST00000593829 EHBP1L1Q8N3D4 1523 aa30.82■■■□□ 2.52
LSM4-203ENST00000593829 COL17A1Q9UMD9 1497 aaPredicted RBP30.81■■■□□ 2.52
LSM4-203ENST00000593829 MAP3K1Q13233 1512 aa30.81■■■□□ 2.52
LSM4-203ENST00000593829 MYO5CQ9NQX4 1742 aa30.8■■■□□ 2.52
LSM4-203ENST00000593829 FANCAO15360 1455 aa30.8■■■□□ 2.52
LSM4-203ENST00000593829 APLP2Q06481 763 aa30.79■■■□□ 2.52
LSM4-203ENST00000593829 ARAP3Q8WWN8 1544 aa30.78■■■□□ 2.52
LSM4-203ENST00000593829 CFAP74Q9C0B2 1584 aa30.77■■■□□ 2.52
LSM4-203ENST00000593829 EFCAB2Q5VUJ9 269 aa30.75■■■□□ 2.51
LSM4-203ENST00000593829 AKNAQ7Z591 1439 aa30.74■■■□□ 2.51
LSM4-203ENST00000593829 LRRC9Q6ZRR7 1453 aa30.73■■■□□ 2.51
LSM4-203ENST00000593829 ARHGAP5Q13017 1502 aa30.71■■■□□ 2.51
LSM4-203ENST00000593829 PREX2Q70Z35 1606 aa30.69■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms