RNA–Protein interactions for RNA: ENST00000589797.5

RETREG3-208, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 2

Gene RETREG3, Length 4,149 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-208ENST00000589797 ERICH6Q7L0X2 663 aa20.39■□□□□ 0.85
RETREG3-208ENST00000589797 DNAJC5BQ9UF47 199 aa20.37■□□□□ 0.85
RETREG3-208ENST00000589797 SENP3Q9H4L4 574 aaPredicted RBP20.32■□□□□ 0.84
RETREG3-208ENST00000589797 EIF4G1Q04637 1599 aaKnown RBP20.31■□□□□ 0.84
RETREG3-208ENST00000589797 FAM9BQ8IZU0 186 aa20.3■□□□□ 0.84
RETREG3-208ENST00000589797 FOXD1Q16676 465 aa20.3■□□□□ 0.84
RETREG3-208ENST00000589797 TSPY4P0CV99 314 aa20.29■□□□□ 0.84
RETREG3-208ENST00000589797 TSPY10P0CW01 314 aa20.29■□□□□ 0.84
RETREG3-208ENST00000589797 FHOD3Q2V2M9 1422 aa20.28■□□□□ 0.84
RETREG3-208ENST00000589797 CFDP1Q9UEE9 299 aaPredicted RBP20.28■□□□□ 0.84
RETREG3-208ENST00000589797 SALL2Q9Y467 1007 aaPredicted RBP20.27■□□□□ 0.84
RETREG3-208ENST00000589797 HNRNPUQ00839 825 aaKnown RBP eCLIP20.27■□□□□ 0.83
RETREG3-208ENST00000589797 ERCC6Q03468 1493 aa20.26■□□□□ 0.83
RETREG3-208ENST00000589797 PLEKHD1A6NEE1 506 aa20.25■□□□□ 0.83
RETREG3-208ENST00000589797 FKBP8Q14318 412 aa20.24■□□□□ 0.83
RETREG3-208ENST00000589797 RGL3Q3MIN7 710 aa20.24■□□□□ 0.83
RETREG3-208ENST00000589797 IGF1RP08069 1367 aa20.23■□□□□ 0.83
RETREG3-208ENST00000589797 CHGAP10645 457 aaKnown RBP20.22■□□□□ 0.83
RETREG3-208ENST00000589797 RAD54L2Q9Y4B4 1467 aa20.22■□□□□ 0.83
RETREG3-208ENST00000589797 SYNJ1O43426 1573 aa20.2■□□□□ 0.82
RETREG3-208ENST00000589797 FANCD2Q9BXW9 1451 aa20.2■□□□□ 0.82
RETREG3-208ENST00000589797 BICRAQ9NZM4 1560 aa20.19■□□□□ 0.82
RETREG3-208ENST00000589797 RAB3GAP2Q9H2M9 1393 aa20.18■□□□□ 0.82
RETREG3-208ENST00000589797 FHAD1B1AJZ9 1412 aa20.18■□□□□ 0.82
RETREG3-208ENST00000589797 IRX6P78412 446 aaPredicted RBP20.18■□□□□ 0.82
RETREG3-208ENST00000589797 NCAPD3P42695 1498 aa20.17■□□□□ 0.82
RETREG3-208ENST00000589797 PDS5BQ9NTI5 1447 aa20.16■□□□□ 0.82
RETREG3-208ENST00000589797 NESP48681 1621 aa20.13■□□□□ 0.81
RETREG3-208ENST00000589797 FGD5Q6ZNL6 1462 aa20.12■□□□□ 0.81
RETREG3-208ENST00000589797 EIF4G2P78344 907 aaKnown RBP eCLIP20.11■□□□□ 0.81
RETREG3-208ENST00000589797 PLPPR3Q6T4P5 718 aa20.08■□□□□ 0.8
RETREG3-208ENST00000589797 MRS2Q9HD23 443 aa20.08■□□□□ 0.8
RETREG3-208ENST00000589797 SETD5Q9C0A6 1442 aa20.08■□□□□ 0.8
RETREG3-208ENST00000589797 NPM1P06748 294 aaKnown RBP eCLIP20.04■□□□□ 0.8
RETREG3-208ENST00000589797 DHX57Q6P158 1386 aaKnown RBP20.01■□□□□ 0.79
RETREG3-208ENST00000589797 ARHGAP35Q9NRY4 1499 aa20.01■□□□□ 0.79
RETREG3-208ENST00000589797 CLSPNQ9HAW4 1339 aa20■□□□□ 0.79
RETREG3-208ENST00000589797 KIF21BO75037 1637 aa20■□□□□ 0.79
RETREG3-208ENST00000589797 ARAP1Q96P48 1450 aa20■□□□□ 0.79
RETREG3-208ENST00000589797 CFTRP13569 1480 aa19.99■□□□□ 0.79
RETREG3-208ENST00000589797 TMC1Q8TDI8 760 aa19.97■□□□□ 0.79
RETREG3-208ENST00000589797 JPH4Q96JJ6 628 aa19.95■□□□□ 0.78
RETREG3-208ENST00000589797 AQRO60306 1485 aaKnown RBP eCLIP19.95■□□□□ 0.785e-6■■■□□ 18.1
RETREG3-208ENST00000589797 CUX1P39880 1505 aa19.94■□□□□ 0.78
RETREG3-208ENST00000589797 FMN1Q68DA7 1419 aa19.94■□□□□ 0.78
RETREG3-208ENST00000589797 MPHOSPH9Q99550 1183 aa19.92■□□□□ 0.78
RETREG3-208ENST00000589797 PHLDB1Q86UU1 1377 aa19.91■□□□□ 0.78
RETREG3-208ENST00000589797 PPP1R15AO75807 674 aaPredicted RBP19.91■□□□□ 0.78
RETREG3-208ENST00000589797 BCL11AQ9H165 835 aa19.91■□□□□ 0.78
RETREG3-208ENST00000589797 UNC13AQ9UPW8 1703 aa19.9■□□□□ 0.78
RETREG3-208ENST00000589797 CARD11Q9BXL7 1154 aa19.9■□□□□ 0.78
RETREG3-208ENST00000589797 ZNF644Q9H582 1327 aaPredicted RBP19.9■□□□□ 0.78
RETREG3-208ENST00000589797 PKD2Q13563 968 aa19.9■□□□□ 0.78
RETREG3-208ENST00000589797 HNRNPMP52272 730 aaKnown RBP eCLIP19.88■□□□□ 0.77
RETREG3-208ENST00000589797 DCAF11Q8TEB1 546 aa19.88■□□□□ 0.77
RETREG3-208ENST00000589797 HSPA5P11021 654 aaKnown RBP19.88■□□□□ 0.77
RETREG3-208ENST00000589797 L3MBTL2Q969R5 705 aa19.86■□□□□ 0.77
RETREG3-208ENST00000589797 GAPVD1Q14C86 1478 aa19.86■□□□□ 0.77
RETREG3-208ENST00000589797 PRXQ9BXM0 1461 aa19.85■□□□□ 0.77
RETREG3-208ENST00000589797 CC2D2AQ9P2K1 1620 aa19.85■□□□□ 0.77
RETREG3-208ENST00000589797 SUPT16HQ9Y5B9 1047 aaKnown RBP19.85■□□□□ 0.77
RETREG3-208ENST00000589797 STAG3Q9UJ98 1225 aa19.82■□□□□ 0.76
RETREG3-208ENST00000589797 TOP2BQ02880 1626 aa19.79■□□□□ 0.76
RETREG3-208ENST00000589797 DAXXQ9UER7 740 aaPredicted RBP19.74■□□□□ 0.75
RETREG3-208ENST00000589797 POLA1P09884 1462 aaPredicted RBP19.74■□□□□ 0.75
RETREG3-208ENST00000589797 NUP155O75694 1391 aa19.73■□□□□ 0.75
RETREG3-208ENST00000589797 CARMIL2Q6F5E8 1435 aa19.7■□□□□ 0.74
RETREG3-208ENST00000589797 TIMELESSQ9UNS1 1208 aa19.7■□□□□ 0.74
RETREG3-208ENST00000589797 HMGXB3Q12766 1538 aa19.7■□□□□ 0.74
RETREG3-208ENST00000589797 CC2D1BQ5T0F9 858 aaKnown RBP19.7■□□□□ 0.74
RETREG3-208ENST00000589797 NPM2Q86SE8 214 aaKnown RBP19.7■□□□□ 0.74
RETREG3-208ENST00000589797 TOPBP1Q92547 1522 aa19.69■□□□□ 0.74
RETREG3-208ENST00000589797 LRRC9Q6ZRR7 1453 aa19.69■□□□□ 0.74
RETREG3-208ENST00000589797 ESF1Q9H501 851 aaKnown RBP19.69■□□□□ 0.74
RETREG3-208ENST00000589797 CANXP27824 592 aaKnown RBP19.67■□□□□ 0.74
RETREG3-208ENST00000589797 GGT6Q6P531 493 aa19.65■□□□□ 0.74
RETREG3-208ENST00000589797 TNNT2P45379 298 aaPredicted RBP19.64■□□□□ 0.74
RETREG3-208ENST00000589797 CCDC136Q96JN2 1154 aa19.64■□□□□ 0.74
RETREG3-208ENST00000589797 SLC24A1O60721 1099 aa19.63■□□□□ 0.73
RETREG3-208ENST00000589797 ERICH3Q5RHP9 1530 aa19.62■□□□□ 0.73
RETREG3-208ENST00000589797 FGD6Q6ZV73 1430 aa19.62■□□□□ 0.73
RETREG3-208ENST00000589797 WDR43Q15061 677 aaKnown RBP eCLIP19.6■□□□□ 0.73
RETREG3-208ENST00000589797 PLEKHG5O94827 1062 aa19.59■□□□□ 0.73
RETREG3-208ENST00000589797 SAFB2Q14151 953 aaKnown RBP eCLIP19.59■□□□□ 0.73
RETREG3-208ENST00000589797 PEG3Q9GZU2 1588 aa19.58■□□□□ 0.73
RETREG3-208ENST00000589797 CCDC18Q5T9S5 1454 aa19.58■□□□□ 0.73
RETREG3-208ENST00000589797 MLECQ14165 292 aa19.57■□□□□ 0.72
RETREG3-208ENST00000589797 NEUROD2Q15784 382 aa19.57■□□□□ 0.72
RETREG3-208ENST00000589797 ANKRD30AQ9BXX3 1397 aa19.55■□□□□ 0.72
RETREG3-208ENST00000589797 B4GALNT3Q6L9W6 998 aa19.55■□□□□ 0.72
RETREG3-208ENST00000589797 PTPRGP23470 1445 aa19.54■□□□□ 0.72
RETREG3-208ENST00000589797 KIF3BO15066 747 aa19.54■□□□□ 0.72
RETREG3-208ENST00000589797 NUTM2DQ5VT03 806 aaPredicted RBP19.54■□□□□ 0.72
RETREG3-208ENST00000589797 EFCAB2Q5VUJ9 269 aa19.54■□□□□ 0.72
RETREG3-208ENST00000589797 RRBP1Q9P2E9 1410 aaKnown RBP19.54■□□□□ 0.72
RETREG3-208ENST00000589797 KNSTRNQ9Y448 316 aa19.53■□□□□ 0.72
RETREG3-208ENST00000589797 CASKIN1Q8WXD9 1431 aa19.53■□□□□ 0.72
RETREG3-208ENST00000589797 NCOA2Q15596 1464 aa19.52■□□□□ 0.72
RETREG3-208ENST00000589797 MYOM3Q5VTT5 1437 aa19.51■□□□□ 0.71
RETREG3-208ENST00000589797 ST20-MTHFSA0A0A6YYL1 179 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms