RNA–Protein interactions for RNA: ENST00000589223.5

AP3D1-206, Transcript of adaptor related protein complex 3 subunit delta 1, humanhuman

TSL 2

Gene AP3D1, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP3D1-206ENST00000589223 DHX57Q6P158 1386 aaKnown RBP17.61■□□□□ 0.41
AP3D1-206ENST00000589223 FHOD3Q2V2M9 1422 aa17.61■□□□□ 0.41
AP3D1-206ENST00000589223 ERICH3Q5RHP9 1530 aa17.59■□□□□ 0.41
AP3D1-206ENST00000589223 POLA1P09884 1462 aaPredicted RBP17.57■□□□□ 0.4
AP3D1-206ENST00000589223 KCNH8Q96L42 1107 aa17.57■□□□□ 0.4
AP3D1-206ENST00000589223 CCNB3Q8WWL7 1395 aa17.55■□□□□ 0.4
AP3D1-206ENST00000589223 TOPBP1Q92547 1522 aa17.55■□□□□ 0.4
AP3D1-206ENST00000589223 PHLDB1Q86UU1 1377 aa17.53■□□□□ 0.4
AP3D1-206ENST00000589223 URB2Q14146 1524 aaKnown RBP17.51■□□□□ 0.39
AP3D1-206ENST00000589223 RAB3GAP2Q9H2M9 1393 aa17.5■□□□□ 0.39
AP3D1-206ENST00000589223 PRDM2Q13029 1718 aa17.5■□□□□ 0.39
AP3D1-206ENST00000589223 CHIC2Q9UKJ5 165 aa17.49■□□□□ 0.39
AP3D1-206ENST00000589223 DNMBPQ6XZF7 1577 aa17.43■□□□□ 0.38
AP3D1-206ENST00000589223 DDX10Q13206 875 aaKnown RBP17.42■□□□□ 0.38
AP3D1-206ENST00000589223 AQRO60306 1485 aaKnown RBP eCLIP17.4■□□□□ 0.389e-7■■■■□ 24.5
AP3D1-206ENST00000589223 CNGB1Q14028 1251 aaPredicted RBP17.38■□□□□ 0.37
AP3D1-206ENST00000589223 RRP7BPQ9NSQ0 103 aa17.38■□□□□ 0.37
AP3D1-206ENST00000589223 KIF21AQ7Z4S6 1674 aa17.38■□□□□ 0.37
AP3D1-206ENST00000589223 RRBP1Q9P2E9 1410 aaKnown RBP17.37■□□□□ 0.37
AP3D1-206ENST00000589223 ABCA10Q8WWZ4 1543 aa17.37■□□□□ 0.37
AP3D1-206ENST00000589223 FBLN2P98095 1184 aa17.36■□□□□ 0.37
AP3D1-206ENST00000589223 PCF11O94913 1555 aaKnown RBP17.34■□□□□ 0.37
AP3D1-206ENST00000589223 LRRC9Q6ZRR7 1453 aa17.34■□□□□ 0.37
AP3D1-206ENST00000589223 FOXD1Q16676 465 aa17.34■□□□□ 0.37
AP3D1-206ENST00000589223 PDS5BQ9NTI5 1447 aa17.33■□□□□ 0.37
AP3D1-206ENST00000589223 GAPVD1Q14C86 1478 aa17.32■□□□□ 0.36
AP3D1-206ENST00000589223 BCANQ96GW7 911 aa17.31■□□□□ 0.36
AP3D1-206ENST00000589223 MTUS2Q5JR59 1369 aa17.31■□□□□ 0.36
AP3D1-206ENST00000589223 TIAM1Q13009 1591 aa17.31■□□□□ 0.36
AP3D1-206ENST00000589223 LAMC3Q9Y6N6 1575 aa17.29■□□□□ 0.36
AP3D1-206ENST00000589223 SETD5Q9C0A6 1442 aa17.27■□□□□ 0.36
AP3D1-206ENST00000589223 TRIM52Q96A61 297 aa17.27■□□□□ 0.36
AP3D1-206ENST00000589223 ZNF608Q9ULD9 1512 aaPredicted RBP17.25■□□□□ 0.35
AP3D1-206ENST00000589223 SENP3-EIF4A1A0A087X0R7 540 aa17.23■□□□□ 0.35
AP3D1-206ENST00000589223 MAPKBP1O60336 1514 aa17.23■□□□□ 0.35
AP3D1-206ENST00000589223 FHAD1B1AJZ9 1412 aa17.21■□□□□ 0.35
AP3D1-206ENST00000589223 PTPRKQ15262 1439 aa17.21■□□□□ 0.35
AP3D1-206ENST00000589223 WDR97A6NE52 1622 aa17.19■□□□□ 0.34
AP3D1-206ENST00000589223 ZNF777Q9ULD5 760 aaPredicted RBP17.17■□□□□ 0.34
AP3D1-206ENST00000589223 ZNF644Q9H582 1327 aaPredicted RBP17.17■□□□□ 0.34
AP3D1-206ENST00000589223 BCL11AQ9H165 835 aa17.16■□□□□ 0.34
AP3D1-206ENST00000589223 ABCA5Q8WWZ7 1642 aa17.15■□□□□ 0.34
AP3D1-206ENST00000589223 CLSPNQ9HAW4 1339 aa17.13■□□□□ 0.33
AP3D1-206ENST00000589223 CTTNBP2Q8WZ74 1663 aa17.12■□□□□ 0.33
AP3D1-206ENST00000589223 CASKIN1Q8WXD9 1431 aa17.12■□□□□ 0.33
AP3D1-206ENST00000589223 CUL7Q14999 1698 aa17.12■□□□□ 0.33
AP3D1-206ENST00000589223 ERCC6Q03468 1493 aa17.12■□□□□ 0.33
AP3D1-206ENST00000589223 TARBP1Q13395 1621 aaKnown RBP17.12■□□□□ 0.33
AP3D1-206ENST00000589223 FGD6Q6ZV73 1430 aa17.11■□□□□ 0.33
AP3D1-206ENST00000589223 POLR3GLQ9BT43 218 aa17.1■□□□□ 0.33
AP3D1-206ENST00000589223 TONSLQ96HA7 1378 aa17.09■□□□□ 0.33
AP3D1-206ENST00000589223 ZNF326Q5BKZ1 582 aaKnown RBP17.09■□□□□ 0.33
AP3D1-206ENST00000589223 SNAPC4Q5SXM2 1469 aa17.09■□□□□ 0.33
AP3D1-206ENST00000589223 CDK13Q14004 1512 aaKnown RBP17.08■□□□□ 0.33
AP3D1-206ENST00000589223 FMN1Q68DA7 1419 aa17.08■□□□□ 0.32
AP3D1-206ENST00000589223 PPP1R15AO75807 674 aaPredicted RBP17.08■□□□□ 0.32
AP3D1-206ENST00000589223 LRRIQ1Q96JM4 1722 aa17.07■□□□□ 0.32
AP3D1-206ENST00000589223 FYCO1Q9BQS8 1478 aa17.07■□□□□ 0.32
AP3D1-206ENST00000589223 MRC2Q9UBG0 1479 aa17.07■□□□□ 0.32
AP3D1-206ENST00000589223 NCOA2Q15596 1464 aa17.06■□□□□ 0.32
AP3D1-206ENST00000589223 CHMP7Q8WUX9 453 aaPredicted RBP17.06■□□□□ 0.32
AP3D1-206ENST00000589223 SUPT16HQ9Y5B9 1047 aaKnown RBP17.05■□□□□ 0.32
AP3D1-206ENST00000589223 MAGI3Q5TCQ9 1506 aa17.04■□□□□ 0.32
AP3D1-206ENST00000589223 CCDC18Q5T9S5 1454 aa17.04■□□□□ 0.32
AP3D1-206ENST00000589223 CFAP43Q8NDM7 1665 aa17.04■□□□□ 0.32
AP3D1-206ENST00000589223 IRX6P78412 446 aaPredicted RBP17.03■□□□□ 0.32
AP3D1-206ENST00000589223 EFCAB5A4FU69 1503 aa17.02■□□□□ 0.32
AP3D1-206ENST00000589223 PBRM1Q86U86 1689 aa17■□□□□ 0.31
AP3D1-206ENST00000589223 GRIN2BQ13224 1484 aa16.98■□□□□ 0.31
AP3D1-206ENST00000589223 MAP3K1Q13233 1512 aa16.98■□□□□ 0.31
AP3D1-206ENST00000589223 FKBP8Q14318 412 aa16.98■□□□□ 0.31
AP3D1-206ENST00000589223 SAMD9Q5K651 1589 aa16.97■□□□□ 0.31
AP3D1-206ENST00000589223 MYOM3Q5VTT5 1437 aa16.96■□□□□ 0.31
AP3D1-206ENST00000589223 NAIPQ13075 1403 aa16.95■□□□□ 0.3
AP3D1-206ENST00000589223 ANP32CO43423 234 aa16.94■□□□□ 0.3
AP3D1-206ENST00000589223 IQGAP2Q13576 1575 aa16.94■□□□□ 0.3
AP3D1-206ENST00000589223 ADAMTS12P58397 1594 aa16.93■□□□□ 0.3
AP3D1-206ENST00000589223 CCDC184Q52MB2 194 aa16.93■□□□□ 0.3
AP3D1-206ENST00000589223 L3MBTL2Q969R5 705 aa16.93■□□□□ 0.3
AP3D1-206ENST00000589223 HSPA5P11021 654 aaKnown RBP16.92■□□□□ 0.3
AP3D1-206ENST00000589223 MPHOSPH9Q99550 1183 aa16.92■□□□□ 0.3
AP3D1-206ENST00000589223 KDM6BO15054 1643 aa16.92■□□□□ 0.3
AP3D1-206ENST00000589223 THOC2Q8NI27 1593 aaKnown RBP16.91■□□□□ 0.3
AP3D1-206ENST00000589223 C11orf95C9JLR9 678 aaPredicted RBP16.91■□□□□ 0.3
AP3D1-206ENST00000589223 SLC4A1APQ9BWU0 796 aaKnown RBP16.9■□□□□ 0.3
AP3D1-206ENST00000589223 EPRSP07814 1512 aaKnown RBP16.9■□□□□ 0.3
AP3D1-206ENST00000589223 EIF4G3O43432 1585 aaKnown RBP16.89■□□□□ 0.29
AP3D1-206ENST00000589223 IFT140Q96RY7 1462 aa16.89■□□□□ 0.29
AP3D1-206ENST00000589223 ANP32EQ9BTT0 268 aa16.88■□□□□ 0.29
AP3D1-206ENST00000589223 PRG4Q92954 1404 aaPredicted RBP16.87■□□□□ 0.29
AP3D1-206ENST00000589223 PLB1Q6P1J6 1458 aa16.87■□□□□ 0.29
AP3D1-206ENST00000589223 JPH4Q96JJ6 628 aa16.87■□□□□ 0.29
AP3D1-206ENST00000589223 HNRNPUQ00839 825 aaKnown RBP eCLIP16.86■□□□□ 0.29
AP3D1-206ENST00000589223 HFM1A2PYH4 1435 aa16.86■□□□□ 0.29
AP3D1-206ENST00000589223 NBPF8Q3BBV2 869 aa16.86■□□□□ 0.29
AP3D1-206ENST00000589223 CFDP1Q9UEE9 299 aaPredicted RBP16.86■□□□□ 0.29
AP3D1-206ENST00000589223 PTPN23Q9H3S7 1636 aa16.85■□□□□ 0.29
AP3D1-206ENST00000589223 FAM9BQ8IZU0 186 aa16.85■□□□□ 0.29
AP3D1-206ENST00000589223 KDM2AQ9Y2K7 1162 aa16.85■□□□□ 0.29
AP3D1-206ENST00000589223 DISP1Q96F81 1524 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms