RNA–Protein interactions for RNA: ENST00000589076.5

SMAD4-207, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 576 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-207ENST00000589076 CCDC61Q9Y6R9 512 aa11.67□□□□□ -0.54
SMAD4-207ENST00000589076 ASTLQ6HA08 431 aaPredicted RBP11.64□□□□□ -0.55
SMAD4-207ENST00000589076 SLC39A7Q92504 469 aa11.64□□□□□ -0.55
SMAD4-207ENST00000589076 C7P10643 843 aa11.62□□□□□ -0.55
SMAD4-207ENST00000589076 RASEFQ8IZ41 740 aa11.61□□□□□ -0.55
SMAD4-207ENST00000589076 KIF12Q96FN5 646 aa11.61□□□□□ -0.55
SMAD4-207ENST00000589076 ATMINO43313 823 aaPredicted RBP11.6□□□□□ -0.55
SMAD4-207ENST00000589076 METRNQ9UJH8 293 aa11.6□□□□□ -0.55
SMAD4-207ENST00000589076 FBXO3Q9UK99 471 aa11.6□□□□□ -0.55
SMAD4-207ENST00000589076 PELP1Q8IZL8 1130 aaKnown RBP11.57□□□□□ -0.56
SMAD4-207ENST00000589076 MAP3K13O43283 966 aa11.55□□□□□ -0.56
SMAD4-207ENST00000589076 FAM212AQ96EL1 285 aa11.55□□□□□ -0.56
SMAD4-207ENST00000589076 MAMSTRQ6ZN01 415 aa11.54□□□□□ -0.56
SMAD4-207ENST00000589076 TIE1P35590 1138 aa11.52□□□□□ -0.57
SMAD4-207ENST00000589076 OTUD5Q96G74 571 aa11.52□□□□□ -0.57
SMAD4-207ENST00000589076 SGIP1Q9BQI5 828 aa11.52□□□□□ -0.57
SMAD4-207ENST00000589076 ATN1P54259 1190 aaPredicted RBP11.51□□□□□ -0.57
SMAD4-207ENST00000589076 PCDHB13Q9Y5F0 798 aa11.5□□□□□ -0.57
SMAD4-207ENST00000589076 POTEB2H3BUK9 544 aa11.49□□□□□ -0.57
SMAD4-207ENST00000589076 NUBP1P53384 320 aa11.48□□□□□ -0.57
SMAD4-207ENST00000589076 BMP2KQ9NSY1 1161 aaPredicted RBP11.48□□□□□ -0.57
SMAD4-207ENST00000589076 SEC24BO95487 1268 aa11.45□□□□□ -0.58
SMAD4-207ENST00000589076 SCUBE2Q9NQ36 999 aa11.45□□□□□ -0.58
SMAD4-207ENST00000589076 DCAF8Q5TAQ9 597 aa11.43□□□□□ -0.58
SMAD4-207ENST00000589076 TTLL13PA6NNM8 815 aa11.41□□□□□ -0.58
SMAD4-207ENST00000589076 KLHL34Q8N239 644 aa11.41□□□□□ -0.58
SMAD4-207ENST00000589076 TRPC6Q9Y210 931 aa11.41□□□□□ -0.58
SMAD4-207ENST00000589076 IER5LQ5T953 404 aa11.37□□□□□ -0.59
SMAD4-207ENST00000589076 IFNL1Q8IU54 200 aa11.36□□□□□ -0.59
SMAD4-207ENST00000589076 TRIM35Q9UPQ4 493 aa11.36□□□□□ -0.59
SMAD4-207ENST00000589076 VASPP50552 380 aaPredicted RBP11.34□□□□□ -0.59
SMAD4-207ENST00000589076 TMEM106CQ9BVX2 250 aa11.34□□□□□ -0.59
SMAD4-207ENST00000589076 GSE1Q14687 1217 aa11.33□□□□□ -0.6
SMAD4-207ENST00000589076 POTEJP0CG39 1038 aa11.31□□□□□ -0.6
SMAD4-207ENST00000589076 PYGBP11216 843 aa11.31□□□□□ -0.6
SMAD4-207ENST00000589076 POTEMA6NI47 508 aa11.28□□□□□ -0.6
SMAD4-207ENST00000589076 PLCG2P16885 1265 aa11.28□□□□□ -0.6
SMAD4-207ENST00000589076 POTEFA5A3E0 1075 aa11.27□□□□□ -0.61
SMAD4-207ENST00000589076 PLSCR2Q9NRY7 297 aa11.27□□□□□ -0.61
SMAD4-207ENST00000589076 COLQQ9Y215 455 aaPredicted RBP11.27□□□□□ -0.61
SMAD4-207ENST00000589076 POTEGQ6S5H5 508 aa11.25□□□□□ -0.61
SMAD4-207ENST00000589076 ZNF467Q7Z7K2 595 aaPredicted RBP11.23□□□□□ -0.61
SMAD4-207ENST00000589076 FAM163AQ96GL9 167 aaPredicted RBP11.23□□□□□ -0.61
SMAD4-207ENST00000589076 GOLGA2Q08379 1002 aa11.21□□□□□ -0.61
SMAD4-207ENST00000589076 PCDH10Q9P2E7 1040 aa11.21□□□□□ -0.61
SMAD4-207ENST00000589076 PCDHB8Q9UN66 801 aa11.21□□□□□ -0.61
SMAD4-207ENST00000589076 OCEL1Q9H607 264 aa11.18□□□□□ -0.62
SMAD4-207ENST00000589076 CHRM1P11229 460 aaPredicted RBP11.16□□□□□ -0.62
SMAD4-207ENST00000589076 SPOCK2Q92563 424 aa11.16□□□□□ -0.62
SMAD4-207ENST00000589076 IRX5P78411 483 aaPredicted RBP11.15□□□□□ -0.62
SMAD4-207ENST00000589076 SLAIN1Q8ND83 568 aa11.15□□□□□ -0.62
SMAD4-207ENST00000589076 MKRN3Q13064 507 aaKnown RBP11.13□□□□□ -0.63
SMAD4-207ENST00000589076 CIZ1Q9ULV3 898 aaPredicted RBP11.13□□□□□ -0.63
SMAD4-207ENST00000589076 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.09□□□□□ -0.63
SMAD4-207ENST00000589076 PSEN1P49768 467 aa11.07□□□□□ -0.64
SMAD4-207ENST00000589076 IFNLR1Q8IU57 520 aaPredicted RBP11.07□□□□□ -0.64
SMAD4-207ENST00000589076 SNPHO15079 494 aa11.05□□□□□ -0.64
SMAD4-207ENST00000589076 PDAP1Q13442 181 aaKnown RBP11.05□□□□□ -0.64
SMAD4-207ENST00000589076 L3MBTL3Q96JM7 780 aaPredicted RBP11.05□□□□□ -0.64
SMAD4-207ENST00000589076 LCE2DQ5TA82 110 aaPredicted RBP11.03□□□□□ -0.64
SMAD4-207ENST00000589076 C3orf67Q6ZVT6 689 aa11.03□□□□□ -0.64
SMAD4-207ENST00000589076 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.02□□□□□ -0.651e-7■□□□□ 10.8
SMAD4-207ENST00000589076 TRIM41Q8WV44 630 aa11.01□□□□□ -0.65
SMAD4-207ENST00000589076 G3V3G9 751 aa10.99□□□□□ -0.65
SMAD4-207ENST00000589076 ST18O60284 1047 aa10.96□□□□□ -0.65
SMAD4-207ENST00000589076 PDCD7Q8N8D1 485 aaKnown RBP10.96□□□□□ -0.65
SMAD4-207ENST00000589076 TMEM121BQ9BXQ6 578 aaPredicted RBP10.95□□□□□ -0.66
SMAD4-207ENST00000589076 CABP2Q9NPB3 220 aa10.95□□□□□ -0.66
SMAD4-207ENST00000589076 CDAN1Q8IWY9 1227 aa10.92□□□□□ -0.66
SMAD4-207ENST00000589076 BOLA1Q9Y3E2 137 aa10.85□□□□□ -0.67
SMAD4-207ENST00000589076 ILDR1Q86SU0 546 aaPredicted RBP10.84□□□□□ -0.67
SMAD4-207ENST00000589076 RIOK3O14730 519 aaKnown RBP10.8□□□□□ -0.68
SMAD4-207ENST00000589076 TAOK2Q9UL54 1235 aa10.8□□□□□ -0.68
SMAD4-207ENST00000589076 DPY19L2Q6NUT2 758 aa10.79□□□□□ -0.68
SMAD4-207ENST00000589076 MARVELD3Q96A59 401 aa10.79□□□□□ -0.68
SMAD4-207ENST00000589076 EMP3P54852 163 aa10.78□□□□□ -0.68
SMAD4-207ENST00000589076 EFCAB3Q8N7B9 438 aa10.78□□□□□ -0.68
SMAD4-207ENST00000589076 VGFO15240 615 aaPredicted RBP10.76□□□□□ -0.69
SMAD4-207ENST00000589076 SOX12O15370 315 aa10.75□□□□□ -0.69
SMAD4-207ENST00000589076 ZNF710Q8N1W2 664 aa10.74□□□□□ -0.69
SMAD4-207ENST00000589076 DOK7Q18PE1 504 aa10.71□□□□□ -0.69
SMAD4-207ENST00000589076 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.7□□□□□ -0.7
SMAD4-207ENST00000589076 RIMBP2O15034 1052 aa10.7□□□□□ -0.7
SMAD4-207ENST00000589076 ZFP91Q96JP5 570 aaPredicted RBP10.7□□□□□ -0.7
SMAD4-207ENST00000589076 FAM205CA6NFA0 338 aa10.67□□□□□ -0.7
SMAD4-207ENST00000589076 RNF25Q96BH1 459 aaPredicted RBP10.65□□□□□ -0.7
SMAD4-207ENST00000589076 HS3ST6Q96QI5 342 aa10.65□□□□□ -0.7
SMAD4-207ENST00000589076 MICALL2Q8IY33 904 aa10.64□□□□□ -0.71
SMAD4-207ENST00000589076 SPNS2Q8IVW8 549 aa10.63□□□□□ -0.71
SMAD4-207ENST00000589076 NLRP6P59044 892 aa10.62□□□□□ -0.71
SMAD4-207ENST00000589076 HOXB3P14651 431 aaPredicted RBP10.61□□□□□ -0.71
SMAD4-207ENST00000589076 HOXB1P14653 301 aaPredicted RBP10.61□□□□□ -0.71
SMAD4-207ENST00000589076 PHF8Q9UPP1 1060 aa10.61□□□□□ -0.71
SMAD4-207ENST00000589076 MMRN1Q13201 1228 aa10.6□□□□□ -0.71
SMAD4-207ENST00000589076 BCL11BQ9C0K0 894 aaPredicted RBP10.6□□□□□ -0.71
SMAD4-207ENST00000589076 STK24Q9Y6E0 443 aa10.6□□□□□ -0.71
SMAD4-207ENST00000589076 ERBB3P21860 1342 aa10.59□□□□□ -0.71
SMAD4-207ENST00000589076 ECM2O94769 699 aaPredicted RBP10.59□□□□□ -0.71
SMAD4-207ENST00000589076 ZSWIM6Q9HCJ5 1215 aa10.58□□□□□ -0.72
SMAD4-207ENST00000589076 STK25O00506 426 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 183.6 ms