RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 RUSC2Q8N2Y8 1516 aa35.45■■■■□ 3.27
SHMT1-209ENST00000582653 KIAA0586Q9BVV6 1533 aa35.42■■■■□ 3.26
SHMT1-209ENST00000582653 CUL7Q14999 1698 aa35.4■■■■□ 3.26
SHMT1-209ENST00000582653 CARMIL1Q5VZK9 1371 aa35.37■■■■□ 3.25
SHMT1-209ENST00000582653 NPM1P06748 294 aaKnown RBP eCLIP35.28■■■■□ 3.24
SHMT1-209ENST00000582653 FAM69CQ0P6D2 419 aa35.1■■■■□ 3.21
SHMT1-209ENST00000582653 PTPRGP23470 1445 aa35.09■■■■□ 3.21
SHMT1-209ENST00000582653 ADCY10Q96PN6 1610 aa35.09■■■■□ 3.21
SHMT1-209ENST00000582653 KIF13AQ9H1H9 1805 aa35.09■■■■□ 3.21
SHMT1-209ENST00000582653 CARMIL2Q6F5E8 1435 aa35.07■■■■□ 3.21
SHMT1-209ENST00000582653 ABCC10Q5T3U5 1492 aa35.07■■■■□ 3.2
SHMT1-209ENST00000582653 MAPKBP1O60336 1514 aa35.06■■■■□ 3.2
SHMT1-209ENST00000582653 TNIKQ9UKE5 1360 aa35.03■■■■□ 3.2
SHMT1-209ENST00000582653 RAPGEF2Q9Y4G8 1499 aa35.02■■■■□ 3.2
SHMT1-209ENST00000582653 IQGAP2Q13576 1575 aa35■■■■□ 3.19
SHMT1-209ENST00000582653 TTBK1Q5TCY1 1321 aaPredicted RBP34.99■■■■□ 3.19
SHMT1-209ENST00000582653 AEBP2Q6ZN18 517 aaPredicted RBP34.91■■■■□ 3.18
SHMT1-209ENST00000582653 DIP2BQ9P265 1576 aa34.89■■■■□ 3.18
SHMT1-209ENST00000582653 DISP1Q96F81 1524 aa34.88■■■■□ 3.17
SHMT1-209ENST00000582653 ABCC2Q92887 1545 aa34.83■■■■□ 3.17
SHMT1-209ENST00000582653 UGGT2Q9NYU1 1516 aa34.83■■■■□ 3.17
SHMT1-209ENST00000582653 UHRF1BP1LA0JNW5 1464 aa34.81■■■■□ 3.16
SHMT1-209ENST00000582653 UACAQ9BZF9 1416 aa34.81■■■■□ 3.16
SHMT1-209ENST00000582653 ASXL2Q76L83 1435 aa34.72■■■■□ 3.15
SHMT1-209ENST00000582653 PLB1Q6P1J6 1458 aa34.71■■■■□ 3.15
SHMT1-209ENST00000582653 PRXQ9BXM0 1461 aa34.69■■■■□ 3.14
SHMT1-209ENST00000582653 KIAA0556O60303 1618 aa34.67■■■■□ 3.14
SHMT1-209ENST00000582653 KDM5BQ9UGL1 1544 aa34.65■■■■□ 3.14
SHMT1-209ENST00000582653 TSPOAP1O95153 1857 aa34.62■■■■□ 3.13
SHMT1-209ENST00000582653 GLI2P10070 1586 aa34.59■■■■□ 3.13
SHMT1-209ENST00000582653 CTTNBP2Q8WZ74 1663 aa34.59■■■■□ 3.13
SHMT1-209ENST00000582653 GOLGA3Q08378 1498 aa34.58■■■■□ 3.13
SHMT1-209ENST00000582653 KDM6BO15054 1643 aa34.56■■■■□ 3.12
SHMT1-209ENST00000582653 CSRNP3Q8WYN3 585 aa34.55■■■■□ 3.12
SHMT1-209ENST00000582653 EPRSP07814 1512 aaKnown RBP34.5■■■■□ 3.11
SHMT1-209ENST00000582653 ZCCHC11Q5TAX3 1644 aaKnown RBP34.48■■■■□ 3.11
SHMT1-209ENST00000582653 FAM9AQ8IZU1 332 aaPredicted RBP34.42■■■■□ 3.1
SHMT1-209ENST00000582653 PPRC1Q5VV67 1664 aaKnown RBP34.41■■■■□ 3.1
SHMT1-209ENST00000582653 ABCA8O94911 1581 aa34.39■■■■□ 3.1
SHMT1-209ENST00000582653 WDR7Q9Y4E6 1490 aa34.37■■■■□ 3.09
SHMT1-209ENST00000582653 MAP3K4Q9Y6R4 1608 aa34.36■■■■□ 3.09
SHMT1-209ENST00000582653 P3H3Q8IVL6 736 aa34.35■■■■□ 3.09
SHMT1-209ENST00000582653 EEA1Q15075 1411 aa34.33■■■■□ 3.09
SHMT1-209ENST00000582653 KDM4FA0A1W2PPD8 638 aa34.33■■■■□ 3.09
SHMT1-209ENST00000582653 KCNH8Q96L42 1107 aa34.31■■■■□ 3.08
SHMT1-209ENST00000582653 TEX14Q8IWB6 1497 aa34.31■■■■□ 3.08
SHMT1-209ENST00000582653 COL17A1Q9UMD9 1497 aaPredicted RBP34.28■■■■□ 3.08
SHMT1-209ENST00000582653 CD109Q6YHK3 1445 aa34.21■■■■□ 3.07
SHMT1-209ENST00000582653 RANGAP1P46060 587 aaPredicted RBP34.18■■■■□ 3.06
SHMT1-209ENST00000582653 CHIC1Q5VXU3 224 aa34.18■■■■□ 3.06
SHMT1-209ENST00000582653 ATP10BO94823 1461 aa34.18■■■■□ 3.06
SHMT1-209ENST00000582653 SAMD9Q5K651 1589 aa34.16■■■■□ 3.06
SHMT1-209ENST00000582653 MAGI3Q5TCQ9 1506 aa34.16■■■■□ 3.06
SHMT1-209ENST00000582653 ARID3CA6NKF2 412 aa34.15■■■■□ 3.06
SHMT1-209ENST00000582653 CFAP43Q8NDM7 1665 aa34.12■■■■□ 3.05
SHMT1-209ENST00000582653 EHMT2Q96KQ7 1210 aa34.03■■■■□ 3.04
SHMT1-209ENST00000582653 KIF21BO75037 1637 aa34.03■■■■□ 3.04
SHMT1-209ENST00000582653 RAPGEF6Q8TEU7 1601 aa34.01■■■■□ 3.04
SHMT1-209ENST00000582653 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.01■■■■□ 3.03
SHMT1-209ENST00000582653 HNRNPUL2Q1KMD3 747 aaKnown RBP34.01■■■■□ 3.03
SHMT1-209ENST00000582653 FHOD3Q2V2M9 1422 aa33.97■■■■□ 3.03
SHMT1-209ENST00000582653 ADGRL1O94910 1474 aa33.95■■■■□ 3.03
SHMT1-209ENST00000582653 NUP153P49790 1475 aaKnown RBP33.93■■■■□ 3.02
SHMT1-209ENST00000582653 PHLDB1Q86UU1 1377 aa33.91■■■■□ 3.02
SHMT1-209ENST00000582653 ARAP3Q8WWN8 1544 aa33.9■■■■□ 3.02
SHMT1-209ENST00000582653 ABCA9Q8IUA7 1624 aa33.9■■■■□ 3.02
SHMT1-209ENST00000582653 UBTFP17480 764 aaKnown RBP33.89■■■■□ 3.02
SHMT1-209ENST00000582653 PLEKHD1A6NEE1 506 aa33.88■■■■□ 3.01
SHMT1-209ENST00000582653 EFCAB5A4FU69 1503 aa33.86■■■■□ 3.01
SHMT1-209ENST00000582653 NEO1Q92859 1461 aa33.76■■■■□ 3
SHMT1-209ENST00000582653 RAPGEF3O95398 923 aa33.74■■■□□ 2.99
SHMT1-209ENST00000582653 ARHGAP35Q9NRY4 1499 aa33.64■■■□□ 2.98
SHMT1-209ENST00000582653 FMN1Q68DA7 1419 aa33.62■■■□□ 2.97
SHMT1-209ENST00000582653 ATP1B4Q9UN42 357 aaPredicted RBP33.61■■■□□ 2.97
SHMT1-209ENST00000582653 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.6■■■□□ 2.97
SHMT1-209ENST00000582653 AKNAQ7Z591 1439 aa33.58■■■□□ 2.97
SHMT1-209ENST00000582653 CDK13Q14004 1512 aaKnown RBP33.57■■■□□ 2.96
SHMT1-209ENST00000582653 CDK11AQ9UQ88 783 aaPredicted RBP33.54■■■□□ 2.96
SHMT1-209ENST00000582653 FANCAO15360 1455 aa33.54■■■□□ 2.96
SHMT1-209ENST00000582653 DENND4BO75064 1496 aaPredicted RBP33.53■■■□□ 2.96
SHMT1-209ENST00000582653 FRMPD1Q5SYB0 1578 aa33.5■■■□□ 2.95
SHMT1-209ENST00000582653 TTC37Q6PGP7 1564 aa33.47■■■□□ 2.95
SHMT1-209ENST00000582653 PLCH2O75038 1416 aa33.47■■■□□ 2.95
SHMT1-209ENST00000582653 HECW1Q76N89 1606 aa33.46■■■□□ 2.95
SHMT1-209ENST00000582653 CFAP74Q9C0B2 1584 aa33.46■■■□□ 2.95
SHMT1-209ENST00000582653 ARID4BQ4LE39 1312 aaPredicted RBP33.44■■■□□ 2.94
SHMT1-209ENST00000582653 HECW2Q9P2P5 1572 aa33.42■■■□□ 2.94
SHMT1-209ENST00000582653 RICTORQ6R327 1708 aa33.41■■■□□ 2.94
SHMT1-209ENST00000582653 EFCAB2Q5VUJ9 269 aa33.39■■■□□ 2.94
SHMT1-209ENST00000582653 ADAMTSL3P82987 1691 aa33.39■■■□□ 2.94
SHMT1-209ENST00000582653 SCAPERQ9BY12 1400 aa33.36■■■□□ 2.93
SHMT1-209ENST00000582653 PTPRMP28827 1452 aa33.35■■■□□ 2.93
SHMT1-209ENST00000582653 TROQ12816 1431 aaPredicted RBP33.34■■■□□ 2.93
SHMT1-209ENST00000582653 MAGI2Q86UL8 1455 aa33.32■■■□□ 2.92
SHMT1-209ENST00000582653 BCORL1Q5H9F3 1711 aa33.31■■■□□ 2.92
SHMT1-209ENST00000582653 ZMYM4Q5VZL5 1548 aa33.31■■■□□ 2.92
SHMT1-209ENST00000582653 ARHGEF40Q8TER5 1519 aa33.3■■■□□ 2.92
SHMT1-209ENST00000582653 LRRIQ1Q96JM4 1722 aa33.29■■■□□ 2.92
SHMT1-209ENST00000582653 CLIP1P30622 1438 aa33.28■■■□□ 2.92
SHMT1-209ENST00000582653 CASKIN1Q8WXD9 1431 aa33.27■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms