RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 JPH4Q96JJ6 628 aa40.66■■■■■ 4.1
SHMT1-206ENST00000579558 PRG4Q92954 1404 aaPredicted RBP40.63■■■■■ 4.09
SHMT1-206ENST00000579558 KIAA0586Q9BVV6 1533 aa40.61■■■■■ 4.09
SHMT1-206ENST00000579558 RAPGEF2Q9Y4G8 1499 aa40.48■■■■■ 4.07
SHMT1-206ENST00000579558 TRHP20396 242 aaPredicted RBP40.38■■■■■ 4.05
SHMT1-206ENST00000579558 IQGAP2Q13576 1575 aa40.35■■■■■ 4.05
SHMT1-206ENST00000579558 PRXQ9BXM0 1461 aa40.24■■■■■ 4.03
SHMT1-206ENST00000579558 CARMIL2Q6F5E8 1435 aa40.2■■■■■ 4.03
SHMT1-206ENST00000579558 CTTNBP2Q8WZ74 1663 aa40.14■■■■■ 4.02
SHMT1-206ENST00000579558 CSRNP3Q8WYN3 585 aa40.12■■■■■ 4.01
SHMT1-206ENST00000579558 EEA1Q15075 1411 aa40.11■■■■■ 4.01
SHMT1-206ENST00000579558 UGGT2Q9NYU1 1516 aa40.11■■■■■ 4.01
SHMT1-206ENST00000579558 TNIKQ9UKE5 1360 aa40.1■■■■■ 4.01
SHMT1-206ENST00000579558 PTPRGP23470 1445 aa40.09■■■■■ 4.01
SHMT1-206ENST00000579558 DISP1Q96F81 1524 aa40.08■■■■■ 4.01
SHMT1-206ENST00000579558 ADCY10Q96PN6 1610 aa40.07■■■■■ 4.01
SHMT1-206ENST00000579558 CHIC1Q5VXU3 224 aa40.06■■■■■ 4
SHMT1-206ENST00000579558 TTBK1Q5TCY1 1321 aaPredicted RBP40.05■■■■■ 4
SHMT1-206ENST00000579558 NPM1P06748 294 aaKnown RBP eCLIP40■■■■□ 3.99
SHMT1-206ENST00000579558 KIAA0556O60303 1618 aa39.98■■■■□ 3.99
SHMT1-206ENST00000579558 FAM9AQ8IZU1 332 aaPredicted RBP39.95■■■■□ 3.99
SHMT1-206ENST00000579558 MAPKBP1O60336 1514 aa39.87■■■■□ 3.97
SHMT1-206ENST00000579558 GOLGA3Q08378 1498 aa39.87■■■■□ 3.97
SHMT1-206ENST00000579558 UACAQ9BZF9 1416 aa39.82■■■■□ 3.96
SHMT1-206ENST00000579558 UHRF1BP1LA0JNW5 1464 aa39.79■■■■□ 3.96
SHMT1-206ENST00000579558 KIF13AQ9H1H9 1805 aa39.79■■■■□ 3.96
SHMT1-206ENST00000579558 ABCC2Q92887 1545 aa39.78■■■■□ 3.96
SHMT1-206ENST00000579558 KIF21BO75037 1637 aa39.74■■■■□ 3.95
SHMT1-206ENST00000579558 ABCC10Q5T3U5 1492 aa39.73■■■■□ 3.95
SHMT1-206ENST00000579558 FAM69CQ0P6D2 419 aa39.67■■■■□ 3.94
SHMT1-206ENST00000579558 DIP2BQ9P265 1576 aa39.67■■■■□ 3.94
SHMT1-206ENST00000579558 PLB1Q6P1J6 1458 aa39.61■■■■□ 3.93
SHMT1-206ENST00000579558 KDM5BQ9UGL1 1544 aa39.6■■■■□ 3.93
SHMT1-206ENST00000579558 SAMD9Q5K651 1589 aa39.59■■■■□ 3.93
SHMT1-206ENST00000579558 P3H3Q8IVL6 736 aa39.58■■■■□ 3.93
SHMT1-206ENST00000579558 ASXL2Q76L83 1435 aa39.57■■■■□ 3.93
SHMT1-206ENST00000579558 ABCA8O94911 1581 aa39.55■■■■□ 3.92
SHMT1-206ENST00000579558 ZCCHC11Q5TAX3 1644 aaKnown RBP39.55■■■■□ 3.92
SHMT1-206ENST00000579558 RANGAP1P46060 587 aaPredicted RBP39.51■■■■□ 3.92
SHMT1-206ENST00000579558 EHMT2Q96KQ7 1210 aa39.49■■■■□ 3.91
SHMT1-206ENST00000579558 UBTFP17480 764 aaKnown RBP39.42■■■■□ 3.9
SHMT1-206ENST00000579558 TSPOAP1O95153 1857 aa39.38■■■■□ 3.89
SHMT1-206ENST00000579558 GLI2P10070 1586 aa39.37■■■■□ 3.89
SHMT1-206ENST00000579558 EFCAB5A4FU69 1503 aa39.35■■■■□ 3.89
SHMT1-206ENST00000579558 FHOD3Q2V2M9 1422 aa39.35■■■■□ 3.89
SHMT1-206ENST00000579558 EPRSP07814 1512 aaKnown RBP39.34■■■■□ 3.89
SHMT1-206ENST00000579558 WDR7Q9Y4E6 1490 aa39.31■■■■□ 3.88
SHMT1-206ENST00000579558 RAPGEF6Q8TEU7 1601 aa39.29■■■■□ 3.88
SHMT1-206ENST00000579558 ARID3CA6NKF2 412 aa39.25■■■■□ 3.87
SHMT1-206ENST00000579558 ATP10BO94823 1461 aa39.22■■■■□ 3.87
SHMT1-206ENST00000579558 MAP3K4Q9Y6R4 1608 aa39.19■■■■□ 3.86
SHMT1-206ENST00000579558 PPRC1Q5VV67 1664 aaKnown RBP39.18■■■■□ 3.86
SHMT1-206ENST00000579558 KDM6BO15054 1643 aa39.14■■■■□ 3.86
SHMT1-206ENST00000579558 KCNH8Q96L42 1107 aa39.13■■■■□ 3.85
SHMT1-206ENST00000579558 NUP153P49790 1475 aaKnown RBP39.12■■■■□ 3.85
SHMT1-206ENST00000579558 ARHGAP35Q9NRY4 1499 aa39.1■■■■□ 3.85
SHMT1-206ENST00000579558 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP39.06■■■■□ 3.84
SHMT1-206ENST00000579558 HNRNPUL2Q1KMD3 747 aaKnown RBP39.06■■■■□ 3.84
SHMT1-206ENST00000579558 TEX14Q8IWB6 1497 aa39.04■■■■□ 3.84
SHMT1-206ENST00000579558 CFAP43Q8NDM7 1665 aa39.03■■■■□ 3.84
SHMT1-206ENST00000579558 AEBP2Q6ZN18 517 aaPredicted RBP39.03■■■■□ 3.84
SHMT1-206ENST00000579558 CD109Q6YHK3 1445 aa38.99■■■■□ 3.83
SHMT1-206ENST00000579558 FMN1Q68DA7 1419 aa38.98■■■■□ 3.83
SHMT1-206ENST00000579558 MAGI3Q5TCQ9 1506 aa38.92■■■■□ 3.82
SHMT1-206ENST00000579558 ABCA9Q8IUA7 1624 aa38.87■■■■□ 3.81
SHMT1-206ENST00000579558 HECW1Q76N89 1606 aa38.86■■■■□ 3.81
SHMT1-206ENST00000579558 PLEKHD1A6NEE1 506 aa38.85■■■■□ 3.81
SHMT1-206ENST00000579558 CDK13Q14004 1512 aaKnown RBP38.84■■■■□ 3.81
SHMT1-206ENST00000579558 ATP1B4Q9UN42 357 aaPredicted RBP38.84■■■■□ 3.81
SHMT1-206ENST00000579558 COL17A1Q9UMD9 1497 aaPredicted RBP38.83■■■■□ 3.81
SHMT1-206ENST00000579558 CLIP1P30622 1438 aa38.76■■■■□ 3.8
SHMT1-206ENST00000579558 PCF11O94913 1555 aaKnown RBP38.66■■■■□ 3.78
SHMT1-206ENST00000579558 CASKIN1Q8WXD9 1431 aa38.63■■■■□ 3.78
SHMT1-206ENST00000579558 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP38.63■■■■□ 3.78
SHMT1-206ENST00000579558 LRRIQ1Q96JM4 1722 aa38.63■■■■□ 3.77
SHMT1-206ENST00000579558 CDK11AQ9UQ88 783 aaPredicted RBP38.62■■■■□ 3.77
SHMT1-206ENST00000579558 PHLDB1Q86UU1 1377 aa38.59■■■■□ 3.77
SHMT1-206ENST00000579558 ARAP3Q8WWN8 1544 aa38.59■■■■□ 3.77
SHMT1-206ENST00000579558 TTC37Q6PGP7 1564 aa38.59■■■■□ 3.77
SHMT1-206ENST00000579558 NEO1Q92859 1461 aa38.58■■■■□ 3.77
SHMT1-206ENST00000579558 FYCO1Q9BQS8 1478 aa38.54■■■■□ 3.76
SHMT1-206ENST00000579558 CCDC18Q5T9S5 1454 aa38.54■■■■□ 3.76
SHMT1-206ENST00000579558 TROQ12816 1431 aaPredicted RBP38.51■■■■□ 3.76
SHMT1-206ENST00000579558 CEP162Q5TB80 1403 aa38.51■■■■□ 3.76
SHMT1-206ENST00000579558 KIF14Q15058 1648 aa38.47■■■■□ 3.75
SHMT1-206ENST00000579558 CFAP74Q9C0B2 1584 aa38.46■■■■□ 3.75
SHMT1-206ENST00000579558 FANCAO15360 1455 aa38.46■■■■□ 3.75
SHMT1-206ENST00000579558 LOC105371045A0A1W2PR82 267 aa38.43■■■■□ 3.74
SHMT1-206ENST00000579558 AKNAQ7Z591 1439 aa38.4■■■■□ 3.74
SHMT1-206ENST00000579558 PLCH2O75038 1416 aa38.39■■■■□ 3.74
SHMT1-206ENST00000579558 KDM4FA0A1W2PPD8 638 aa38.39■■■■□ 3.74
SHMT1-206ENST00000579558 RAPGEF3O95398 923 aa38.39■■■■□ 3.74
SHMT1-206ENST00000579558 MYO5CQ9NQX4 1742 aa38.38■■■■□ 3.74
SHMT1-206ENST00000579558 FRMPD1Q5SYB0 1578 aa38.34■■■■□ 3.73
SHMT1-206ENST00000579558 DENND4BO75064 1496 aaPredicted RBP38.32■■■■□ 3.72
SHMT1-206ENST00000579558 ADGRL1O94910 1474 aa38.28■■■■□ 3.72
SHMT1-206ENST00000579558 RICTORQ6R327 1708 aa38.26■■■■□ 3.72
SHMT1-206ENST00000579558 EFCAB2Q5VUJ9 269 aa38.25■■■■□ 3.71
SHMT1-206ENST00000579558 ARHGAP5Q13017 1502 aa38.22■■■■□ 3.71
SHMT1-206ENST00000579558 SCAPERQ9BY12 1400 aa38.2■■■■□ 3.71
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms