RNA–Protein interactions for RNA: ENST00000573126.1

RPAIN-212, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 2,728 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-212ENST00000573126 TOPBP1Q92547 1522 aa16.41■□□□□ 0.22
RPAIN-212ENST00000573126 LRRC9Q6ZRR7 1453 aa16.41■□□□□ 0.22
RPAIN-212ENST00000573126 DNMBPQ6XZF7 1577 aa16.4■□□□□ 0.22
RPAIN-212ENST00000573126 PHLDB1Q86UU1 1377 aa16.4■□□□□ 0.22
RPAIN-212ENST00000573126 RAB3GAP2Q9H2M9 1393 aa16.4■□□□□ 0.22
RPAIN-212ENST00000573126 FHAD1B1AJZ9 1412 aa16.39■□□□□ 0.21
RPAIN-212ENST00000573126 ABCA10Q8WWZ4 1543 aa16.39■□□□□ 0.21
RPAIN-212ENST00000573126 FHOD3Q2V2M9 1422 aa16.39■□□□□ 0.21
RPAIN-212ENST00000573126 MAP3K1Q13233 1512 aa16.39■□□□□ 0.21
RPAIN-212ENST00000573126 FAM50AQ14320 339 aaKnown RBP16.39■□□□□ 0.21
RPAIN-212ENST00000573126 PELP1Q8IZL8 1130 aaKnown RBP16.38■□□□□ 0.21
RPAIN-212ENST00000573126 PCF11O94913 1555 aaKnown RBP16.36■□□□□ 0.21
RPAIN-212ENST00000573126 DNAJC5BQ9UF47 199 aa16.35■□□□□ 0.21
RPAIN-212ENST00000573126 SETD5Q9C0A6 1442 aa16.31■□□□□ 0.2
RPAIN-212ENST00000573126 TDRD9Q8NDG6 1382 aaKnown RBP16.3■□□□□ 0.2
RPAIN-212ENST00000573126 MAPKBP1O60336 1514 aa16.29■□□□□ 0.2
RPAIN-212ENST00000573126 URB2Q14146 1524 aaKnown RBP16.29■□□□□ 0.2
RPAIN-212ENST00000573126 CFAP43Q8NDM7 1665 aa16.28■□□□□ 0.2
RPAIN-212ENST00000573126 FYCO1Q9BQS8 1478 aa16.27■□□□□ 0.19
RPAIN-212ENST00000573126 EFCAB5A4FU69 1503 aa16.26■□□□□ 0.19
RPAIN-212ENST00000573126 CASKIN1Q8WXD9 1431 aa16.26■□□□□ 0.19
RPAIN-212ENST00000573126 CUL7Q14999 1698 aa16.26■□□□□ 0.19
RPAIN-212ENST00000573126 SIN3AQ96ST3 1273 aa16.24■□□□□ 0.19
RPAIN-212ENST00000573126 LAMC3Q9Y6N6 1575 aa16.23■□□□□ 0.19
RPAIN-212ENST00000573126 FMN1Q68DA7 1419 aa16.21■□□□□ 0.19
RPAIN-212ENST00000573126 AQRO60306 1485 aaKnown RBP eCLIP16.21■□□□□ 0.183e-7■■■□□ 18.2
RPAIN-212ENST00000573126 CTTNBP2Q8WZ74 1663 aa16.21■□□□□ 0.18
RPAIN-212ENST00000573126 GAPVD1Q14C86 1478 aa16.2■□□□□ 0.18
RPAIN-212ENST00000573126 MTUS2Q5JR59 1369 aa16.19■□□□□ 0.18
RPAIN-212ENST00000573126 PDS5BQ9NTI5 1447 aa16.18■□□□□ 0.18
RPAIN-212ENST00000573126 WDR97A6NE52 1622 aa16.18■□□□□ 0.18
RPAIN-212ENST00000573126 SNAPC4Q5SXM2 1469 aa16.18■□□□□ 0.18
RPAIN-212ENST00000573126 ABCA5Q8WWZ7 1642 aa16.16■□□□□ 0.18
RPAIN-212ENST00000573126 FGD6Q6ZV73 1430 aa16.16■□□□□ 0.18
RPAIN-212ENST00000573126 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.13■□□□□ 0.17
RPAIN-212ENST00000573126 SAMD9Q5K651 1589 aa16.11■□□□□ 0.17
RPAIN-212ENST00000573126 PTPRKQ15262 1439 aa16.09■□□□□ 0.17
RPAIN-212ENST00000573126 KIF21AQ7Z4S6 1674 aa16.09■□□□□ 0.17
RPAIN-212ENST00000573126 KCNH8Q96L42 1107 aa16.09■□□□□ 0.17
RPAIN-212ENST00000573126 HIRIP3Q9BW71 556 aaPredicted RBP16.08■□□□□ 0.16
RPAIN-212ENST00000573126 NCOA2Q15596 1464 aa16.08■□□□□ 0.16
RPAIN-212ENST00000573126 DDX10Q13206 875 aaKnown RBP16.08■□□□□ 0.16
RPAIN-212ENST00000573126 GRIN2BQ13224 1484 aa16.07■□□□□ 0.16
RPAIN-212ENST00000573126 CCDC18Q5T9S5 1454 aa16.06■□□□□ 0.16
RPAIN-212ENST00000573126 LRRIQ1Q96JM4 1722 aa16.05■□□□□ 0.16
RPAIN-212ENST00000573126 MYOM3Q5VTT5 1437 aa16.05■□□□□ 0.16
RPAIN-212ENST00000573126 PPP1R15AO75807 674 aaPredicted RBP16.04■□□□□ 0.16
RPAIN-212ENST00000573126 TIMELESSQ9UNS1 1208 aa16.04■□□□□ 0.16
RPAIN-212ENST00000573126 TARBP1Q13395 1621 aaKnown RBP16.04■□□□□ 0.16
RPAIN-212ENST00000573126 HFM1A2PYH4 1435 aa16.04■□□□□ 0.16
RPAIN-212ENST00000573126 ARID3CA6NKF2 412 aa16.03■□□□□ 0.16
RPAIN-212ENST00000573126 TONSLQ96HA7 1378 aa16.01■□□□□ 0.15
RPAIN-212ENST00000573126 NAIPQ13075 1403 aa16■□□□□ 0.15
RPAIN-212ENST00000573126 UACAQ9BZF9 1416 aa16■□□□□ 0.15
RPAIN-212ENST00000573126 MAGI3Q5TCQ9 1506 aa16■□□□□ 0.15
RPAIN-212ENST00000573126 EHBP1L1Q8N3D4 1523 aa16■□□□□ 0.15
RPAIN-212ENST00000573126 CHIC2Q9UKJ5 165 aa15.99■□□□□ 0.15
RPAIN-212ENST00000573126 PTPN23Q9H3S7 1636 aa15.99■□□□□ 0.15
RPAIN-212ENST00000573126 THOC2Q8NI27 1593 aaKnown RBP15.99■□□□□ 0.15
RPAIN-212ENST00000573126 SUPT6HQ7KZ85 1726 aaKnown RBP15.98■□□□□ 0.15
RPAIN-212ENST00000573126 RRP7BPQ9NSQ0 103 aa15.98■□□□□ 0.15
RPAIN-212ENST00000573126 SUPT16HQ9Y5B9 1047 aaKnown RBP15.96■□□□□ 0.15
RPAIN-212ENST00000573126 UGGT2Q9NYU1 1516 aa15.96■□□□□ 0.15
RPAIN-212ENST00000573126 IQGAP2Q13576 1575 aa15.95■□□□□ 0.14
RPAIN-212ENST00000573126 PBRM1Q86U86 1689 aa15.93■□□□□ 0.14
RPAIN-212ENST00000573126 ARHGEF11O15085 1522 aa15.93■□□□□ 0.14
RPAIN-212ENST00000573126 EPRSP07814 1512 aaKnown RBP15.93■□□□□ 0.14
RPAIN-212ENST00000573126 CDK13Q14004 1512 aaKnown RBP15.93■□□□□ 0.14
RPAIN-212ENST00000573126 ADAMTS12P58397 1594 aa15.92■□□□□ 0.14
RPAIN-212ENST00000573126 MRC2Q9UBG0 1479 aa15.92■□□□□ 0.14
RPAIN-212ENST00000573126 HECW1Q76N89 1606 aa15.91■□□□□ 0.14
RPAIN-212ENST00000573126 ZNF608Q9ULD9 1512 aaPredicted RBP15.9■□□□□ 0.14
RPAIN-212ENST00000573126 TRIM52Q96A61 297 aa15.9■□□□□ 0.14
RPAIN-212ENST00000573126 TCOF1Q13428 1488 aaKnown RBP15.87■□□□□ 0.13
RPAIN-212ENST00000573126 ANP32CO43423 234 aa15.87■□□□□ 0.13
RPAIN-212ENST00000573126 WDR62O43379 1518 aa15.85■□□□□ 0.13
RPAIN-212ENST00000573126 DENND4BO75064 1496 aaPredicted RBP15.83■□□□□ 0.12
RPAIN-212ENST00000573126 FOXD1Q16676 465 aa15.82■□□□□ 0.12
RPAIN-212ENST00000573126 KDM5BQ9UGL1 1544 aa15.82■□□□□ 0.12
RPAIN-212ENST00000573126 KDM6BO15054 1643 aa15.82■□□□□ 0.12
RPAIN-212ENST00000573126 IFT140Q96RY7 1462 aa15.82■□□□□ 0.12
RPAIN-212ENST00000573126 MIA2Q96PC5 1412 aa15.82■□□□□ 0.12
RPAIN-212ENST00000573126 MPHOSPH9Q99550 1183 aa15.81■□□□□ 0.12
RPAIN-212ENST00000573126 CCER2I3L3R5 266 aa15.8■□□□□ 0.12
RPAIN-212ENST00000573126 ZNF644Q9H582 1327 aaPredicted RBP15.8■□□□□ 0.12
RPAIN-212ENST00000573126 DISP1Q96F81 1524 aa15.79■□□□□ 0.12
RPAIN-212ENST00000573126 KIAA0586Q9BVV6 1533 aa15.79■□□□□ 0.12
RPAIN-212ENST00000573126 AKNAQ7Z591 1439 aa15.79■□□□□ 0.12
RPAIN-212ENST00000573126 GCC2Q8IWJ2 1684 aa15.78■□□□□ 0.12
RPAIN-212ENST00000573126 NUP153P49790 1475 aaKnown RBP15.77■□□□□ 0.11
RPAIN-212ENST00000573126 BCANQ96GW7 911 aa15.77■□□□□ 0.11
RPAIN-212ENST00000573126 KIAA0556O60303 1618 aa15.76■□□□□ 0.11
RPAIN-212ENST00000573126 HSPA5P11021 654 aaKnown RBP15.75■□□□□ 0.11
RPAIN-212ENST00000573126 GRIN2AQ12879 1464 aa15.75■□□□□ 0.11
RPAIN-212ENST00000573126 DAPK1P53355 1430 aa15.75■□□□□ 0.11
RPAIN-212ENST00000573126 L3MBTL2Q969R5 705 aa15.74■□□□□ 0.11
RPAIN-212ENST00000573126 FBLN2P98095 1184 aa15.74■□□□□ 0.11
RPAIN-212ENST00000573126 FKBP8Q14318 412 aa15.74■□□□□ 0.11
RPAIN-212ENST00000573126 WASHC2AQ641Q2 1341 aa15.73■□□□□ 0.11
RPAIN-212ENST00000573126 CDK11AQ9UQ88 783 aaPredicted RBP15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms