RNA–Protein interactions for RNA: ENST00000569764.1

SMG1-217, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5

Gene SMG1, Length 4,187 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-217ENST00000569764 ATP1B4Q9UN42 357 aaPredicted RBP9.94□□□□□ -0.82
SMG1-217ENST00000569764 FBXO3Q9UK99 471 aa9.93□□□□□ -0.82
SMG1-217ENST00000569764 IFT140Q96RY7 1462 aa9.91□□□□□ -0.82
SMG1-217ENST00000569764 UBE2Q2Q8WVN8 375 aa9.91□□□□□ -0.82
SMG1-217ENST00000569764 CDK11BP21127 795 aaKnown RBP9.91□□□□□ -0.82
SMG1-217ENST00000569764 RUSC2Q8N2Y8 1516 aa9.91□□□□□ -0.82
SMG1-217ENST00000569764 POLR3GLQ9BT43 218 aa9.9□□□□□ -0.82
SMG1-217ENST00000569764 SOGA1O94964 1423 aa9.88□□□□□ -0.83
SMG1-217ENST00000569764 CARMIL2Q6F5E8 1435 aa9.88□□□□□ -0.83
SMG1-217ENST00000569764 SYNJ1O43426 1573 aa9.88□□□□□ -0.83
SMG1-217ENST00000569764 CFAP44Q96MT7 982 aa9.87□□□□□ -0.83
SMG1-217ENST00000569764 WRNQ14191 1432 aaPredicted RBP eCLIP9.86□□□□□ -0.83
SMG1-217ENST00000569764 HRCP23327 699 aa9.86□□□□□ -0.83
SMG1-217ENST00000569764 NEFLP07196 543 aa9.85□□□□□ -0.83
SMG1-217ENST00000569764 FKBP8Q14318 412 aa9.82□□□□□ -0.84
SMG1-217ENST00000569764 PKNOX2Q96KN3 472 aa9.81□□□□□ -0.84
SMG1-217ENST00000569764 KDM2AQ9Y2K7 1162 aa9.79□□□□□ -0.84
SMG1-217ENST00000569764 ARID3AQ99856 593 aa9.78□□□□□ -0.84
SMG1-217ENST00000569764 SAMD1Q6SPF0 538 aaPredicted RBP9.77□□□□□ -0.85
SMG1-217ENST00000569764 PCGF6Q9BYE7 350 aa9.77□□□□□ -0.85
SMG1-217ENST00000569764 KIF27Q86VH2 1401 aa9.77□□□□□ -0.85
SMG1-217ENST00000569764 CFTRP13569 1480 aa9.76□□□□□ -0.85
SMG1-217ENST00000569764 ARID4BQ4LE39 1312 aaPredicted RBP9.76□□□□□ -0.85
SMG1-217ENST00000569764 BCL11BQ9C0K0 894 aaPredicted RBP9.74□□□□□ -0.85
SMG1-217ENST00000569764 CCDC136Q96JN2 1154 aa9.74□□□□□ -0.85
SMG1-217ENST00000569764 ZBTB22O15209 634 aa9.73□□□□□ -0.85
SMG1-217ENST00000569764 CUX1P39880 1505 aa9.73□□□□□ -0.85
SMG1-217ENST00000569764 GRIN2BQ13224 1484 aa9.73□□□□□ -0.85
SMG1-217ENST00000569764 BRD2P25440 801 aaKnown RBP9.73□□□□□ -0.85
SMG1-217ENST00000569764 TOP2BQ02880 1626 aa9.72□□□□□ -0.85
SMG1-217ENST00000569764 PLEKHD1A6NEE1 506 aa9.72□□□□□ -0.85
SMG1-217ENST00000569764 PPARGC1BQ86YN6 1023 aaKnown RBP9.71□□□□□ -0.85
SMG1-217ENST00000569764 NESP48681 1621 aa9.71□□□□□ -0.85
SMG1-217ENST00000569764 TDRD9Q8NDG6 1382 aaKnown RBP9.71□□□□□ -0.86
SMG1-217ENST00000569764 BIVM-ERCC5R4GMW8 1640 aa9.71□□□□□ -0.86
SMG1-217ENST00000569764 TAF7LQ5H9L4 462 aa9.7□□□□□ -0.86
SMG1-217ENST00000569764 VSIG10Q8N0Z9 540 aa9.7□□□□□ -0.86
SMG1-217ENST00000569764 A0A0U1RQG5 324 aaPredicted RBP9.69□□□□□ -0.86
SMG1-217ENST00000569764 JPH4Q96JJ6 628 aa9.69□□□□□ -0.86
SMG1-217ENST00000569764 IGSF3O75054 1194 aa9.69□□□□□ -0.86
SMG1-217ENST00000569764 FAM69CQ0P6D2 419 aa9.68□□□□□ -0.86
SMG1-217ENST00000569764 PPP6R1Q9UPN7 881 aa9.68□□□□□ -0.86
SMG1-217ENST00000569764 PRDM2Q13029 1718 aa9.68□□□□□ -0.86
SMG1-217ENST00000569764 IRX6P78412 446 aaPredicted RBP9.66□□□□□ -0.86
SMG1-217ENST00000569764 MAGI1Q96QZ7 1491 aaPredicted RBP9.64□□□□□ -0.87
SMG1-217ENST00000569764 GAPVD1Q14C86 1478 aa9.64□□□□□ -0.87
SMG1-217ENST00000569764 RAPGEF2Q9Y4G8 1499 aa9.64□□□□□ -0.87
SMG1-217ENST00000569764 ADRA2BP18089 450 aa9.63□□□□□ -0.87
SMG1-217ENST00000569764 CEP162Q5TB80 1403 aa9.63□□□□□ -0.87
SMG1-217ENST00000569764 PTPRGP23470 1445 aa9.62□□□□□ -0.87
SMG1-217ENST00000569764 FHAD1B1AJZ9 1412 aa9.61□□□□□ -0.87
SMG1-217ENST00000569764 FOXD1Q16676 465 aa9.61□□□□□ -0.87
SMG1-217ENST00000569764 KCNH8Q96L42 1107 aa9.61□□□□□ -0.87
SMG1-217ENST00000569764 CENPBP07199 599 aaPredicted RBP9.6□□□□□ -0.87
SMG1-217ENST00000569764 GOLGA3Q08378 1498 aa9.6□□□□□ -0.87
SMG1-217ENST00000569764 TNIKQ9UKE5 1360 aa9.6□□□□□ -0.87
SMG1-217ENST00000569764 DNMBPQ6XZF7 1577 aa9.6□□□□□ -0.87
SMG1-217ENST00000569764 EEA1Q15075 1411 aa9.6□□□□□ -0.87
SMG1-217ENST00000569764 ZEB1P37275 1124 aaPredicted RBP9.6□□□□□ -0.87
SMG1-217ENST00000569764 CNKSR2Q8WXI2 1034 aa9.6□□□□□ -0.87
SMG1-217ENST00000569764 KIF21BO75037 1637 aa9.59□□□□□ -0.87
SMG1-217ENST00000569764 TOPBP1Q92547 1522 aa9.59□□□□□ -0.87
SMG1-217ENST00000569764 ANO8Q9HCE9 1232 aaPredicted RBP9.58□□□□□ -0.88
SMG1-217ENST00000569764 WDR62O43379 1518 aa9.57□□□□□ -0.88
SMG1-217ENST00000569764 CARMIL1Q5VZK9 1371 aa9.57□□□□□ -0.88
SMG1-217ENST00000569764 DMRT2Q9Y5R5 561 aa9.57□□□□□ -0.88
SMG1-217ENST00000569764 POGZQ7Z3K3 1410 aa9.56□□□□□ -0.88
SMG1-217ENST00000569764 SYNJ2O15056 1496 aa9.56□□□□□ -0.88
SMG1-217ENST00000569764 FGD5Q6ZNL6 1462 aa9.55□□□□□ -0.88
SMG1-217ENST00000569764 STAG3Q9UJ98 1225 aa9.55□□□□□ -0.88
SMG1-217ENST00000569764 PRXQ9BXM0 1461 aa9.55□□□□□ -0.88
SMG1-217ENST00000569764 AQRO60306 1485 aaKnown RBP eCLIP9.54□□□□□ -0.88
SMG1-217ENST00000569764 RAD54L2Q9Y4B4 1467 aa9.54□□□□□ -0.88
SMG1-217ENST00000569764 HSP90B1P14625 803 aaKnown RBP9.54□□□□□ -0.88
SMG1-217ENST00000569764 NBR1Q14596 966 aa9.54□□□□□ -0.88
SMG1-217ENST00000569764 PAXIP1Q6ZW49 1069 aaPredicted RBP9.54□□□□□ -0.88
SMG1-217ENST00000569764 HDGFP51858 240 aaKnown RBP9.53□□□□□ -0.88
SMG1-217ENST00000569764 KIF21AQ7Z4S6 1674 aa9.53□□□□□ -0.88
SMG1-217ENST00000569764 EFCAB2Q5VUJ9 269 aa9.52□□□□□ -0.89
SMG1-217ENST00000569764 URB2Q14146 1524 aaKnown RBP9.52□□□□□ -0.89
SMG1-217ENST00000569764 WDR97A6NE52 1622 aa9.52□□□□□ -0.89
SMG1-217ENST00000569764 CCDC9Q9Y3X0 531 aaKnown RBP9.52□□□□□ -0.89
SMG1-217ENST00000569764 IGF1RP08069 1367 aa9.5□□□□□ -0.89
SMG1-217ENST00000569764 TSPY4P0CV99 314 aa9.5□□□□□ -0.89
SMG1-217ENST00000569764 TSPY10P0CW01 314 aa9.5□□□□□ -0.89
SMG1-217ENST00000569764 CLIP1P30622 1438 aa9.5□□□□□ -0.89
SMG1-217ENST00000569764 SNAPC4Q5SXM2 1469 aa9.5□□□□□ -0.89
SMG1-217ENST00000569764 TEX14Q8IWB6 1497 aa9.5□□□□□ -0.89
SMG1-217ENST00000569764 PHLDB1Q86UU1 1377 aa9.5□□□□□ -0.89
SMG1-217ENST00000569764 POLA1P09884 1462 aaPredicted RBP9.49□□□□□ -0.89
SMG1-217ENST00000569764 FGD1P98174 961 aa9.48□□□□□ -0.89
SMG1-217ENST00000569764 PRG4Q92954 1404 aaPredicted RBP9.48□□□□□ -0.89
SMG1-217ENST00000569764 HMGB1P09429 215 aaKnown RBP9.47□□□□□ -0.89
SMG1-217ENST00000569764 ERICH3Q5RHP9 1530 aa9.46□□□□□ -0.9
SMG1-217ENST00000569764 PLB1Q6P1J6 1458 aa9.46□□□□□ -0.9
SMG1-217ENST00000569764 ACIN1Q9UKV3 1341 aaKnown RBP9.45□□□□□ -0.9
SMG1-217ENST00000569764 ARAP1Q96P48 1450 aa9.45□□□□□ -0.9
SMG1-217ENST00000569764 P3H3Q8IVL6 736 aa9.45□□□□□ -0.9
SMG1-217ENST00000569764 NAP1L5Q96NT1 182 aaPredicted RBP9.42□□□□□ -0.9
SMG1-217ENST00000569764 ZNF777Q9ULD5 760 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms