RNA–Protein interactions for RNA: ENST00000567379.5

VPS9D1-206, Transcript of VPS9 domain containing 1, humanhuman

TSL 5

Gene VPS9D1, Length 694 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-206ENST00000567379 ZNF608Q9ULD9 1512 aaPredicted RBP17.01■□□□□ 0.31
VPS9D1-206ENST00000567379 FHAD1B1AJZ9 1412 aa16.99■□□□□ 0.31
VPS9D1-206ENST00000567379 EIF4G3O43432 1585 aaKnown RBP16.98■□□□□ 0.31
VPS9D1-206ENST00000567379 CTTNBP2Q8WZ74 1663 aa16.98■□□□□ 0.31
VPS9D1-206ENST00000567379 VPS8Q8N3P4 1428 aa16.98■□□□□ 0.31
VPS9D1-206ENST00000567379 ADAMTS12P58397 1594 aa16.98■□□□□ 0.31
VPS9D1-206ENST00000567379 TRIM26Q12899 539 aaPredicted RBP16.97■□□□□ 0.31
VPS9D1-206ENST00000567379 ARAP1Q96P48 1450 aa16.94■□□□□ 0.3
VPS9D1-206ENST00000567379 ARHGAP35Q9NRY4 1499 aa16.93■□□□□ 0.3
VPS9D1-206ENST00000567379 PCGF6Q9BYE7 350 aa16.92■□□□□ 0.3
VPS9D1-206ENST00000567379 SNAPC4Q5SXM2 1469 aa16.91■□□□□ 0.3
VPS9D1-206ENST00000567379 MAGI1Q96QZ7 1491 aaPredicted RBP16.89■□□□□ 0.29
VPS9D1-206ENST00000567379 APLP2Q06481 763 aa16.89■□□□□ 0.29
VPS9D1-206ENST00000567379 EFCAB5A4FU69 1503 aa16.88■□□□□ 0.29
VPS9D1-206ENST00000567379 PPARGC1BQ86YN6 1023 aaKnown RBP16.86■□□□□ 0.29
VPS9D1-206ENST00000567379 SYNJ2O15056 1496 aa16.82■□□□□ 0.28
VPS9D1-206ENST00000567379 GRIN2AQ12879 1464 aa16.82■□□□□ 0.28
VPS9D1-206ENST00000567379 IQGAP2Q13576 1575 aa16.81■□□□□ 0.28
VPS9D1-206ENST00000567379 CHMP7Q8WUX9 453 aaPredicted RBP16.8■□□□□ 0.28
VPS9D1-206ENST00000567379 SAMD9Q5K651 1589 aa16.78■□□□□ 0.28
VPS9D1-206ENST00000567379 CHD1O14646 1710 aa16.78■□□□□ 0.28
VPS9D1-206ENST00000567379 P3H3Q8IVL6 736 aa16.77■□□□□ 0.28
VPS9D1-206ENST00000567379 KIAA0586Q9BVV6 1533 aa16.76■□□□□ 0.27
VPS9D1-206ENST00000567379 FHOD3Q2V2M9 1422 aa16.76■□□□□ 0.27
VPS9D1-206ENST00000567379 FBLN2P98095 1184 aa16.74■□□□□ 0.27
VPS9D1-206ENST00000567379 TTBK1Q5TCY1 1321 aaPredicted RBP16.73■□□□□ 0.27
VPS9D1-206ENST00000567379 FMN1Q68DA7 1419 aa16.73■□□□□ 0.27
VPS9D1-206ENST00000567379 UGGT2Q9NYU1 1516 aa16.72■□□□□ 0.27
VPS9D1-206ENST00000567379 MAP3K1Q13233 1512 aa16.7■□□□□ 0.26
VPS9D1-206ENST00000567379 NUP160Q12769 1436 aa16.7■□□□□ 0.26
VPS9D1-206ENST00000567379 PCF11O94913 1555 aaKnown RBP16.69■□□□□ 0.26
VPS9D1-206ENST00000567379 CEP170Q5SW79 1584 aa16.69■□□□□ 0.26
VPS9D1-206ENST00000567379 CASKIN1Q8WXD9 1431 aa16.69■□□□□ 0.26
VPS9D1-206ENST00000567379 FYCO1Q9BQS8 1478 aa16.68■□□□□ 0.26
VPS9D1-206ENST00000567379 ILDR1Q86SU0 546 aaPredicted RBP16.68■□□□□ 0.26
VPS9D1-206ENST00000567379 TIAM1Q13009 1591 aa16.66■□□□□ 0.26
VPS9D1-206ENST00000567379 ATP1B4Q9UN42 357 aaPredicted RBP16.64■□□□□ 0.25
VPS9D1-206ENST00000567379 CFAP43Q8NDM7 1665 aa16.63■□□□□ 0.25
VPS9D1-206ENST00000567379 KANK4Q5T7N3 995 aaPredicted RBP16.62■□□□□ 0.25
VPS9D1-206ENST00000567379 KIAA0556O60303 1618 aa16.62■□□□□ 0.25
VPS9D1-206ENST00000567379 DISP1Q96F81 1524 aa16.6■□□□□ 0.25
VPS9D1-206ENST00000567379 JPH4Q96JJ6 628 aa16.58■□□□□ 0.24
VPS9D1-206ENST00000567379 CARMIL2Q6F5E8 1435 aa16.58■□□□□ 0.24
VPS9D1-206ENST00000567379 CLASP1Q7Z460 1538 aa16.57■□□□□ 0.24
VPS9D1-206ENST00000567379 LRRC9Q6ZRR7 1453 aa16.57■□□□□ 0.24
VPS9D1-206ENST00000567379 HECW1Q76N89 1606 aa16.56■□□□□ 0.24
VPS9D1-206ENST00000567379 CCDC18Q5T9S5 1454 aa16.54■□□□□ 0.24
VPS9D1-206ENST00000567379 LRRIQ1Q96JM4 1722 aa16.5■□□□□ 0.23
VPS9D1-206ENST00000567379 MTUS2Q5JR59 1369 aa16.48■□□□□ 0.23
VPS9D1-206ENST00000567379 RAPGEF6Q8TEU7 1601 aa16.48■□□□□ 0.23
VPS9D1-206ENST00000567379 RRBP1Q9P2E9 1410 aaKnown RBP16.47■□□□□ 0.23
VPS9D1-206ENST00000567379 HRCP23327 699 aa16.47■□□□□ 0.23
VPS9D1-206ENST00000567379 PRG4Q92954 1404 aaPredicted RBP16.46■□□□□ 0.23
VPS9D1-206ENST00000567379 EPRSP07814 1512 aaKnown RBP16.46■□□□□ 0.23
VPS9D1-206ENST00000567379 SHROOM2Q13796 1616 aa16.46■□□□□ 0.23
VPS9D1-206ENST00000567379 EHBP1L1Q8N3D4 1523 aa16.45■□□□□ 0.22
VPS9D1-206ENST00000567379 CCNB3Q8WWL7 1395 aa16.43■□□□□ 0.22
VPS9D1-206ENST00000567379 HNRNPUL2Q1KMD3 747 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-206ENST00000567379 SUPT6HQ7KZ85 1726 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-206ENST00000567379 NUP153P49790 1475 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-206ENST00000567379 CDK13Q14004 1512 aaKnown RBP16.4■□□□□ 0.22
VPS9D1-206ENST00000567379 PHLDB1Q86UU1 1377 aa16.39■□□□□ 0.21
VPS9D1-206ENST00000567379 PTPRGP23470 1445 aa16.38■□□□□ 0.21
VPS9D1-206ENST00000567379 PLB1Q6P1J6 1458 aa16.38■□□□□ 0.21
VPS9D1-206ENST00000567379 CDK11AQ9UQ88 783 aaPredicted RBP16.38■□□□□ 0.21
VPS9D1-206ENST00000567379 ABCA8O94911 1581 aa16.38■□□□□ 0.21
VPS9D1-206ENST00000567379 NCOA2Q15596 1464 aa16.36■□□□□ 0.21
VPS9D1-206ENST00000567379 MAGI3Q5TCQ9 1506 aa16.35■□□□□ 0.21
VPS9D1-206ENST00000567379 ARID3CA6NKF2 412 aa16.35■□□□□ 0.21
VPS9D1-206ENST00000567379 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.35■□□□□ 0.21
VPS9D1-206ENST00000567379 ZEB1P37275 1124 aaPredicted RBP16.35■□□□□ 0.21
VPS9D1-206ENST00000567379 KIF13AQ9H1H9 1805 aa16.32■□□□□ 0.2
VPS9D1-206ENST00000567379 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.32■□□□□ 0.2
VPS9D1-206ENST00000567379 MYOM3Q5VTT5 1437 aa16.31■□□□□ 0.2
VPS9D1-206ENST00000567379 FGD6Q6ZV73 1430 aa16.31■□□□□ 0.2
VPS9D1-206ENST00000567379 FAM50AQ14320 339 aaKnown RBP16.31■□□□□ 0.2
VPS9D1-206ENST00000567379 ERCC6L2Q5T890 1561 aa16.3■□□□□ 0.2
VPS9D1-206ENST00000567379 CCER1Q8TC90 406 aaPredicted RBP16.29■□□□□ 0.2
VPS9D1-206ENST00000567379 TROQ12816 1431 aaPredicted RBP16.28■□□□□ 0.2
VPS9D1-206ENST00000567379 UACAQ9BZF9 1416 aa16.28■□□□□ 0.2
VPS9D1-206ENST00000567379 KDM4FA0A1W2PPD8 638 aa16.28■□□□□ 0.2
VPS9D1-206ENST00000567379 ATP10BO94823 1461 aa16.27■□□□□ 0.19
VPS9D1-206ENST00000567379 ITGAEP38570 1179 aa16.26■□□□□ 0.19
VPS9D1-206ENST00000567379 PLEKHD1A6NEE1 506 aa16.25■□□□□ 0.19
VPS9D1-206ENST00000567379 ABCC2Q92887 1545 aa16.24■□□□□ 0.19
VPS9D1-206ENST00000567379 ADCY10Q96PN6 1610 aa16.23■□□□□ 0.19
VPS9D1-206ENST00000567379 PTPN23Q9H3S7 1636 aa16.23■□□□□ 0.19
VPS9D1-206ENST00000567379 MIA2Q96PC5 1412 aa16.23■□□□□ 0.19
VPS9D1-206ENST00000567379 TCOF1Q13428 1488 aaKnown RBP16.21■□□□□ 0.19
VPS9D1-206ENST00000567379 UHRF1BP1LA0JNW5 1464 aa16.2■□□□□ 0.18
VPS9D1-206ENST00000567379 KIF14Q15058 1648 aa16.19■□□□□ 0.18
VPS9D1-206ENST00000567379 ITSN2Q9NZM3 1697 aa16.18■□□□□ 0.18
VPS9D1-206ENST00000567379 KDM6BO15054 1643 aa16.16■□□□□ 0.18
VPS9D1-206ENST00000567379 SETD5Q9C0A6 1442 aa16.16■□□□□ 0.18
VPS9D1-206ENST00000567379 KDM5BQ9UGL1 1544 aa16.12■□□□□ 0.17
VPS9D1-206ENST00000567379 GPATCH8Q9UKJ3 1502 aaKnown RBP16.12■□□□□ 0.17
VPS9D1-206ENST00000567379 ZCCHC11Q5TAX3 1644 aaKnown RBP16.12■□□□□ 0.17
VPS9D1-206ENST00000567379 ABCC10Q5T3U5 1492 aa16.11■□□□□ 0.17
VPS9D1-206ENST00000567379 CFDP1Q9UEE9 299 aaPredicted RBP16.11■□□□□ 0.17
VPS9D1-206ENST00000567379 RAB3GAP2Q9H2M9 1393 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 114.6 ms