RNA–Protein interactions for RNA: ENST00000566550.1

HERPUD1-211, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 511 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-211ENST00000566550 POTEB2H3BUK9 544 aa7.69□□□□□ -1.18
HERPUD1-211ENST00000566550 METRNQ9UJH8 293 aa7.69□□□□□ -1.18
HERPUD1-211ENST00000566550 ASTLQ6HA08 431 aaPredicted RBP7.67□□□□□ -1.18
HERPUD1-211ENST00000566550 PELP1Q8IZL8 1130 aaKnown RBP7.66□□□□□ -1.18
HERPUD1-211ENST00000566550 ATMINO43313 823 aaPredicted RBP7.65□□□□□ -1.18
HERPUD1-211ENST00000566550 MS4A3Q96HJ5 214 aa7.65□□□□□ -1.18
HERPUD1-211ENST00000566550 PLEKHG5O94827 1062 aa7.64□□□□□ -1.19
HERPUD1-211ENST00000566550 MNX1P50219 401 aaPredicted RBP7.64□□□□□ -1.19
HERPUD1-211ENST00000566550 SCUBE2Q9NQ36 999 aa7.64□□□□□ -1.19
HERPUD1-211ENST00000566550 TSPYL2Q9H2G4 693 aaPredicted RBP7.62□□□□□ -1.19
HERPUD1-211ENST00000566550 FAM163AQ96GL9 167 aaPredicted RBP7.58□□□□□ -1.2
HERPUD1-211ENST00000566550 ATN1P54259 1190 aaPredicted RBP7.56□□□□□ -1.2
HERPUD1-211ENST00000566550 CCDC61Q9Y6R9 512 aa7.55□□□□□ -1.2
HERPUD1-211ENST00000566550 KIF12Q96FN5 646 aa7.54□□□□□ -1.2
HERPUD1-211ENST00000566550 SEC24BO95487 1268 aa7.53□□□□□ -1.2
HERPUD1-211ENST00000566550 POTEJP0CG39 1038 aa7.52□□□□□ -1.21
HERPUD1-211ENST00000566550 TIE1P35590 1138 aa7.52□□□□□ -1.21
HERPUD1-211ENST00000566550 MIER1Q8N108 512 aa7.5□□□□□ -1.21
HERPUD1-211ENST00000566550 BMP2KQ9NSY1 1161 aaPredicted RBP7.49□□□□□ -1.21
HERPUD1-211ENST00000566550 MAP3K13O43283 966 aa7.48□□□□□ -1.21
HERPUD1-211ENST00000566550 RTN4Q9NQC3 1192 aaKnown RBP7.47□□□□□ -1.21
HERPUD1-211ENST00000566550 PROM2Q8N271 834 aa7.46□□□□□ -1.22
HERPUD1-211ENST00000566550 IER5LQ5T953 404 aa7.45□□□□□ -1.22
HERPUD1-211ENST00000566550 SGIP1Q9BQI5 828 aa7.45□□□□□ -1.22
HERPUD1-211ENST00000566550 ZBTB47Q9UFB7 747 aaPredicted RBP7.45□□□□□ -1.22
HERPUD1-211ENST00000566550 TTLL13PA6NNM8 815 aa7.43□□□□□ -1.22
HERPUD1-211ENST00000566550 LCE2DQ5TA82 110 aaPredicted RBP7.43□□□□□ -1.22
HERPUD1-211ENST00000566550 PLCD3Q8N3E9 789 aa7.43□□□□□ -1.22
HERPUD1-211ENST00000566550 POTEFA5A3E0 1075 aa7.42□□□□□ -1.22
HERPUD1-211ENST00000566550 CDAN1Q8IWY9 1227 aa7.41□□□□□ -1.22
HERPUD1-211ENST00000566550 RASEFQ8IZ41 740 aa7.41□□□□□ -1.22
HERPUD1-211ENST00000566550 TRPC6Q9Y210 931 aa7.41□□□□□ -1.22
HERPUD1-211ENST00000566550 PCDHB13Q9Y5F0 798 aa7.41□□□□□ -1.22
HERPUD1-211ENST00000566550 AMER1Q5JTC6 1135 aaPredicted RBP7.4□□□□□ -1.22
HERPUD1-211ENST00000566550 TRIM35Q9UPQ4 493 aa7.4□□□□□ -1.22
HERPUD1-211ENST00000566550 SLAIN1Q8ND83 568 aa7.39□□□□□ -1.23
HERPUD1-211ENST00000566550 COLQQ9Y215 455 aaPredicted RBP7.39□□□□□ -1.23
HERPUD1-211ENST00000566550 PLCG2P16885 1265 aa7.37□□□□□ -1.23
HERPUD1-211ENST00000566550 FAM212AQ96EL1 285 aa7.35□□□□□ -1.23
HERPUD1-211ENST00000566550 SNPHO15079 494 aa7.34□□□□□ -1.23
HERPUD1-211ENST00000566550 TMEM106CQ9BVX2 250 aa7.33□□□□□ -1.24
HERPUD1-211ENST00000566550 ST18O60284 1047 aa7.32□□□□□ -1.24
HERPUD1-211ENST00000566550 IFNL1Q8IU54 200 aa7.31□□□□□ -1.24
HERPUD1-211ENST00000566550 TMEM121BQ9BXQ6 578 aaPredicted RBP7.3□□□□□ -1.24
HERPUD1-211ENST00000566550 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.29□□□□□ -1.24
HERPUD1-211ENST00000566550 NUBP1P53384 320 aa7.28□□□□□ -1.24
HERPUD1-211ENST00000566550 OCEL1Q9H607 264 aa7.27□□□□□ -1.25
HERPUD1-211ENST00000566550 DCAF8Q5TAQ9 597 aa7.26□□□□□ -1.25
HERPUD1-211ENST00000566550 IRX5P78411 483 aaPredicted RBP7.25□□□□□ -1.25
HERPUD1-211ENST00000566550 GOLGA2Q08379 1002 aa7.22□□□□□ -1.25
HERPUD1-211ENST00000566550 MMRN1Q13201 1228 aa7.22□□□□□ -1.25
HERPUD1-211ENST00000566550 SPNS2Q8IVW8 549 aa7.21□□□□□ -1.26
HERPUD1-211ENST00000566550 C3orf67Q6ZVT6 689 aa7.19□□□□□ -1.26
HERPUD1-211ENST00000566550 L3MBTL3Q96JM7 780 aaPredicted RBP7.19□□□□□ -1.26
HERPUD1-211ENST00000566550 PYGBP11216 843 aa7.18□□□□□ -1.26
HERPUD1-211ENST00000566550 MKRN3Q13064 507 aaKnown RBP7.17□□□□□ -1.26
HERPUD1-211ENST00000566550 MARVELD3Q96A59 401 aa7.16□□□□□ -1.26
HERPUD1-211ENST00000566550 FBXO3Q9UK99 471 aa7.16□□□□□ -1.26
HERPUD1-211ENST00000566550 EMP3P54852 163 aa7.15□□□□□ -1.26
HERPUD1-211ENST00000566550 ZNF467Q7Z7K2 595 aaPredicted RBP7.15□□□□□ -1.26
HERPUD1-211ENST00000566550 PCDHB8Q9UN66 801 aa7.15□□□□□ -1.26
HERPUD1-211ENST00000566550 GSE1Q14687 1217 aa7.14□□□□□ -1.27
HERPUD1-211ENST00000566550 G3V3G9 751 aa7.12□□□□□ -1.27
HERPUD1-211ENST00000566550 FKBP8Q14318 412 aa7.11□□□□□ -1.27
HERPUD1-211ENST00000566550 KLHL34Q8N239 644 aa7.11□□□□□ -1.27
HERPUD1-211ENST00000566550 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.1□□□□□ -1.27
HERPUD1-211ENST00000566550 FAM205CA6NFA0 338 aa7.08□□□□□ -1.28
HERPUD1-211ENST00000566550 PDCD7Q8N8D1 485 aaKnown RBP7.07□□□□□ -1.28
HERPUD1-211ENST00000566550 HS3ST6Q96QI5 342 aa7.07□□□□□ -1.28
HERPUD1-211ENST00000566550 CHRM1P11229 460 aaPredicted RBP7.05□□□□□ -1.28
HERPUD1-211ENST00000566550 PSEN1P49768 467 aa7.05□□□□□ -1.28
HERPUD1-211ENST00000566550 ZNF710Q8N1W2 664 aa7.04□□□□□ -1.28
HERPUD1-211ENST00000566550 PDAP1Q13442 181 aaKnown RBP7.01□□□□□ -1.29
HERPUD1-211ENST00000566550 RIMBP2O15034 1052 aa7□□□□□ -1.29
HERPUD1-211ENST00000566550 DOK7Q18PE1 504 aa7□□□□□ -1.29
HERPUD1-211ENST00000566550 KRTAP3-3Q9BYR6 98 aa7□□□□□ -1.29
HERPUD1-211ENST00000566550 KRTAP3-2Q9BYR7 98 aa7□□□□□ -1.29
HERPUD1-211ENST00000566550 BOLA1Q9Y3E2 137 aa6.99□□□□□ -1.29
HERPUD1-211ENST00000566550 ERBB3P21860 1342 aa6.99□□□□□ -1.29
HERPUD1-211ENST00000566550 VASPP50552 380 aaPredicted RBP6.97□□□□□ -1.29
HERPUD1-211ENST00000566550 CABP2Q9NPB3 220 aa6.97□□□□□ -1.29
HERPUD1-211ENST00000566550 POTEB3A0JP26 581 aa6.96□□□□□ -1.3
HERPUD1-211ENST00000566550 HOXB1P14653 301 aaPredicted RBP6.96□□□□□ -1.3
HERPUD1-211ENST00000566550 POTEBQ6S5H4 581 aa6.96□□□□□ -1.3
HERPUD1-211ENST00000566550 ILDR1Q86SU0 546 aaPredicted RBP6.95□□□□□ -1.3
HERPUD1-211ENST00000566550 DPY19L2Q6NUT2 758 aa6.94□□□□□ -1.3
HERPUD1-211ENST00000566550 RNF166Q96A37 237 aaPredicted RBP6.94□□□□□ -1.3
HERPUD1-211ENST00000566550 CIZ1Q9ULV3 898 aaPredicted RBP6.93□□□□□ -1.3
HERPUD1-211ENST00000566550 HOXB3P14651 431 aaPredicted RBP6.92□□□□□ -1.3
HERPUD1-211ENST00000566550 SPOCK2Q92563 424 aa6.91□□□□□ -1.3
HERPUD1-211ENST00000566550 MYT1LQ9UL68 1186 aa6.91□□□□□ -1.3
HERPUD1-211ENST00000566550 PTGER2P43116 358 aa6.9□□□□□ -1.3
HERPUD1-211ENST00000566550 ZSWIM6Q9HCJ5 1215 aa6.89□□□□□ -1.31
HERPUD1-211ENST00000566550 VARS2Q5ST30 1063 aaKnown RBP6.88□□□□□ -1.31
HERPUD1-211ENST00000566550 TRIM41Q8WV44 630 aa6.86□□□□□ -1.31
HERPUD1-211ENST00000566550 PRKCSHP14314 528 aaPredicted RBP6.85□□□□□ -1.31
HERPUD1-211ENST00000566550 ZNF687Q8N1G0 1237 aa6.85□□□□□ -1.31
HERPUD1-211ENST00000566550 EFCAB3Q8N7B9 438 aa6.83□□□□□ -1.32
HERPUD1-211ENST00000566550 SOX12O15370 315 aa6.81□□□□□ -1.32
HERPUD1-211ENST00000566550 HAP1P54257 671 aaPredicted RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms