RNA–Protein interactions for RNA: ENST00000562680.5

TCF4-216, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 5,733 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-216ENST00000562680 DNMBPQ6XZF7 1577 aa10.7□□□□□ -0.7
TCF4-216ENST00000562680 ERICH3Q5RHP9 1530 aa10.69□□□□□ -0.7
TCF4-216ENST00000562680 TOPBP1Q92547 1522 aa10.69□□□□□ -0.7
TCF4-216ENST00000562680 SYNJ1O43426 1573 aa10.69□□□□□ -0.7
TCF4-216ENST00000562680 PRKCSHP14314 528 aaPredicted RBP10.69□□□□□ -0.7
TCF4-216ENST00000562680 IFT140Q96RY7 1462 aa10.68□□□□□ -0.7
TCF4-216ENST00000562680 NEUROD1Q13562 356 aa10.68□□□□□ -0.7
TCF4-216ENST00000562680 BCL11AQ9H165 835 aa10.68□□□□□ -0.7
TCF4-216ENST00000562680 KIF21BO75037 1637 aa10.67□□□□□ -0.7
TCF4-216ENST00000562680 RUSC2Q8N2Y8 1516 aa10.67□□□□□ -0.7
TCF4-216ENST00000562680 NESP48681 1621 aa10.66□□□□□ -0.7
TCF4-216ENST00000562680 GRIN2BQ13224 1484 aa10.66□□□□□ -0.7
TCF4-216ENST00000562680 CFDP1Q9UEE9 299 aaPredicted RBP10.66□□□□□ -0.7
TCF4-216ENST00000562680 RAD54L2Q9Y4B4 1467 aa10.66□□□□□ -0.7
TCF4-216ENST00000562680 CUX1P39880 1505 aa10.65□□□□□ -0.7
TCF4-216ENST00000562680 CCNB3Q8WWL7 1395 aa10.64□□□□□ -0.71
TCF4-216ENST00000562680 POLA1P09884 1462 aaPredicted RBP10.63□□□□□ -0.71
TCF4-216ENST00000562680 TONSLQ96HA7 1378 aa10.63□□□□□ -0.71
TCF4-216ENST00000562680 ARHGAP35Q9NRY4 1499 aa10.62□□□□□ -0.71
TCF4-216ENST00000562680 CLSPNQ9HAW4 1339 aa10.61□□□□□ -0.71
TCF4-216ENST00000562680 JPH4Q96JJ6 628 aa10.61□□□□□ -0.71
TCF4-216ENST00000562680 ESF1Q9H501 851 aaKnown RBP10.6□□□□□ -0.71
TCF4-216ENST00000562680 ABCA10Q8WWZ4 1543 aa10.6□□□□□ -0.71
TCF4-216ENST00000562680 PRXQ9BXM0 1461 aa10.6□□□□□ -0.71
TCF4-216ENST00000562680 POLR3GLQ9BT43 218 aa10.6□□□□□ -0.71
TCF4-216ENST00000562680 CHIC2Q9UKJ5 165 aa10.59□□□□□ -0.71
TCF4-216ENST00000562680 ZNF316A6NFI3 1004 aaPredicted RBP10.59□□□□□ -0.71
TCF4-216ENST00000562680 EIF5BO60841 1220 aaKnown RBP10.59□□□□□ -0.71
TCF4-216ENST00000562680 DIEXFQ68CQ4 756 aaKnown RBP10.59□□□□□ -0.71
TCF4-216ENST00000562680 KCNH8Q96L42 1107 aa10.59□□□□□ -0.71
TCF4-216ENST00000562680 FHOD3Q2V2M9 1422 aa10.58□□□□□ -0.71
TCF4-216ENST00000562680 NEFLP07196 543 aa10.58□□□□□ -0.72
TCF4-216ENST00000562680 CCDC18Q5T9S5 1454 aa10.57□□□□□ -0.72
TCF4-216ENST00000562680 AQRO60306 1485 aaKnown RBP eCLIP10.56□□□□□ -0.72
TCF4-216ENST00000562680 BIVM-ERCC5R4GMW8 1640 aa10.55□□□□□ -0.72
TCF4-216ENST00000562680 EFCAB5A4FU69 1503 aa10.55□□□□□ -0.72
TCF4-216ENST00000562680 ZNF326Q5BKZ1 582 aaKnown RBP10.54□□□□□ -0.72
TCF4-216ENST00000562680 PTPRGP23470 1445 aa10.53□□□□□ -0.72
TCF4-216ENST00000562680 RRP7BPQ9NSQ0 103 aa10.53□□□□□ -0.72
TCF4-216ENST00000562680 RSPH4AQ5TD94 716 aa10.52□□□□□ -0.73
TCF4-216ENST00000562680 SLC4A1APQ9BWU0 796 aaKnown RBP10.52□□□□□ -0.73
TCF4-216ENST00000562680 DNAJC5BQ9UF47 199 aa10.51□□□□□ -0.73
TCF4-216ENST00000562680 CUL7Q14999 1698 aa10.51□□□□□ -0.73
TCF4-216ENST00000562680 OSCARQ8IYS5 282 aa10.5□□□□□ -0.73
TCF4-216ENST00000562680 KANK4Q5T7N3 995 aaPredicted RBP10.5□□□□□ -0.73
TCF4-216ENST00000562680 ANP32CO43423 234 aa10.5□□□□□ -0.73
TCF4-216ENST00000562680 EFCAB2Q5VUJ9 269 aa10.5□□□□□ -0.73
TCF4-216ENST00000562680 TIMELESSQ9UNS1 1208 aa10.49□□□□□ -0.73
TCF4-216ENST00000562680 YTHDC1Q96MU7 727 aaKnown RBP10.49□□□□□ -0.73
TCF4-216ENST00000562680 DAXXQ9UER7 740 aaPredicted RBP10.49□□□□□ -0.73
TCF4-216ENST00000562680 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.49□□□□□ -0.73
TCF4-216ENST00000562680 CASKIN1Q8WXD9 1431 aa10.48□□□□□ -0.73
TCF4-216ENST00000562680 URB2Q14146 1524 aaKnown RBP10.48□□□□□ -0.73
TCF4-216ENST00000562680 SETD5Q9C0A6 1442 aa10.48□□□□□ -0.73
TCF4-216ENST00000562680 MAGI1Q96QZ7 1491 aaPredicted RBP10.46□□□□□ -0.73
TCF4-216ENST00000562680 SNAPC4Q5SXM2 1469 aa10.46□□□□□ -0.74
TCF4-216ENST00000562680 FYCO1Q9BQS8 1478 aa10.46□□□□□ -0.74
TCF4-216ENST00000562680 STAG3Q9UJ98 1225 aa10.46□□□□□ -0.74
TCF4-216ENST00000562680 KIAA0586Q9BVV6 1533 aa10.45□□□□□ -0.74
TCF4-216ENST00000562680 ANKRD30AQ9BXX3 1397 aa10.45□□□□□ -0.74
TCF4-216ENST00000562680 KANK1Q14678 1352 aa10.43□□□□□ -0.74
TCF4-216ENST00000562680 SYNJ2O15056 1496 aa10.42□□□□□ -0.74
TCF4-216ENST00000562680 CHGAP10645 457 aaKnown RBP10.42□□□□□ -0.74
TCF4-216ENST00000562680 GLIPR1L2Q4G1C9 344 aa10.41□□□□□ -0.74
TCF4-216ENST00000562680 ARAP1Q96P48 1450 aa10.4□□□□□ -0.74
TCF4-216ENST00000562680 BCANQ96GW7 911 aa10.4□□□□□ -0.75
TCF4-216ENST00000562680 LRRC9Q6ZRR7 1453 aa10.39□□□□□ -0.75
TCF4-216ENST00000562680 PRDM2Q13029 1718 aa10.39□□□□□ -0.75
TCF4-216ENST00000562680 IQGAP2Q13576 1575 aa10.38□□□□□ -0.75
TCF4-216ENST00000562680 EIF4G2P78344 907 aaKnown RBP eCLIP10.38□□□□□ -0.753e-7■■■■■ 40.1
TCF4-216ENST00000562680 PRG4Q92954 1404 aaPredicted RBP10.38□□□□□ -0.75
TCF4-216ENST00000562680 GRIN2AQ12879 1464 aa10.37□□□□□ -0.75
TCF4-216ENST00000562680 MYOM3Q5VTT5 1437 aa10.37□□□□□ -0.75
TCF4-216ENST00000562680 RAB3GAP2Q9H2M9 1393 aa10.36□□□□□ -0.75
TCF4-216ENST00000562680 HECW1Q76N89 1606 aa10.36□□□□□ -0.75
TCF4-216ENST00000562680 FGD6Q6ZV73 1430 aa10.35□□□□□ -0.75
TCF4-216ENST00000562680 EHBP1L1Q8N3D4 1523 aa10.35□□□□□ -0.75
TCF4-216ENST00000562680 MAP3K1Q13233 1512 aa10.34□□□□□ -0.75
TCF4-216ENST00000562680 SPAG9O60271 1321 aaKnown RBP10.33□□□□□ -0.76
TCF4-216ENST00000562680 SCAF1Q9H7N4 1312 aaKnown RBP10.33□□□□□ -0.76
TCF4-216ENST00000562680 CNGB1Q14028 1251 aaPredicted RBP10.32□□□□□ -0.76
TCF4-216ENST00000562680 GTF3C3Q9Y5Q9 886 aa10.32□□□□□ -0.76
TCF4-216ENST00000562680 WDR97A6NE52 1622 aa10.32□□□□□ -0.76
TCF4-216ENST00000562680 CDCA8Q53HL2 280 aa10.32□□□□□ -0.76
TCF4-216ENST00000562680 KDM2AQ9Y2K7 1162 aa10.32□□□□□ -0.76
TCF4-216ENST00000562680 NCOA2Q15596 1464 aa10.31□□□□□ -0.76
TCF4-216ENST00000562680 WDR62O43379 1518 aa10.31□□□□□ -0.76
TCF4-216ENST00000562680 MIA2Q96PC5 1412 aa10.31□□□□□ -0.76
TCF4-216ENST00000562680 TROQ12816 1431 aaPredicted RBP10.31□□□□□ -0.76
TCF4-216ENST00000562680 TIAM1Q13009 1591 aa10.3□□□□□ -0.76
TCF4-216ENST00000562680 ARID4BQ4LE39 1312 aaPredicted RBP10.3□□□□□ -0.76
TCF4-216ENST00000562680 NUP155O75694 1391 aa10.3□□□□□ -0.76
TCF4-216ENST00000562680 ZNF608Q9ULD9 1512 aaPredicted RBP10.29□□□□□ -0.76
TCF4-216ENST00000562680 RRBP1Q9P2E9 1410 aaKnown RBP10.29□□□□□ -0.76
TCF4-216ENST00000562680 NEFMP07197 916 aa10.29□□□□□ -0.76
TCF4-216ENST00000562680 PLEKHH2Q8IVE3 1493 aa10.29□□□□□ -0.76
TCF4-216ENST00000562680 MPHOSPH9Q99550 1183 aa10.28□□□□□ -0.76
TCF4-216ENST00000562680 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.28□□□□□ -0.76
TCF4-216ENST00000562680 PPP1R15AO75807 674 aaPredicted RBP10.28□□□□□ -0.76
TCF4-216ENST00000562680 ANP32EQ9BTT0 268 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms