RNA–Protein interactions for RNA: ENST00000561212.5

ZEB1-222, Transcript of zinc finger E-box binding homeobox 1, human

TSL 5

Gene ZEB1, Length 1,500 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZEB1-222	ENST00000561212	TNIK	Q9UKE5	1360 aa		11.9	□□□□□ -0.5
ZEB1-222	ENST00000561212	IFT140	Q96RY7	1462 aa		11.86	□□□□□ -0.51
ZEB1-222	ENST00000561212	TDRD9	Q8NDG6	1382 aa	Known RBP	11.85	□□□□□ -0.51
ZEB1-222	ENST00000561212	GAPVD1	Q14C86	1478 aa		11.85	□□□□□ -0.51
ZEB1-222	ENST00000561212	CARMIL1	Q5VZK9	1371 aa		11.83	□□□□□ -0.52
ZEB1-222	ENST00000561212	NPM3	O75607	178 aa	Known RBP	11.82	□□□□□ -0.52
ZEB1-222	ENST00000561212	EHMT2	Q96KQ7	1210 aa		11.82	□□□□□ -0.52
ZEB1-222	ENST00000561212	ZNF608	Q9ULD9	1512 aa	Predicted RBP	11.81	□□□□□ -0.52
ZEB1-222	ENST00000561212	CUL7	Q14999	1698 aa		11.81	□□□□□ -0.52
ZEB1-222	ENST00000561212	CEP162	Q5TB80	1403 aa		11.8	□□□□□ -0.52
ZEB1-222	ENST00000561212	AQR	O60306	1485 aa	Known RBP eCLIP	11.8	□□□□□ -0.52
ZEB1-222	ENST00000561212	UBTF	P17480	764 aa	Known RBP	11.78	□□□□□ -0.52
ZEB1-222	ENST00000561212	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.78	□□□□□ -0.52
ZEB1-222	ENST00000561212	PBRM1	Q86U86	1689 aa		11.78	□□□□□ -0.52
ZEB1-222	ENST00000561212	GRIN2B	Q13224	1484 aa		11.77	□□□□□ -0.53
ZEB1-222	ENST00000561212	EIF4G3	O43432	1585 aa	Known RBP	11.76	□□□□□ -0.53
ZEB1-222	ENST00000561212	PCGF6	Q9BYE7	350 aa		11.75	□□□□□ -0.53
ZEB1-222	ENST00000561212	ADAMTS12	P58397	1594 aa		11.73	□□□□□ -0.53
ZEB1-222	ENST00000561212	FHAD1	B1AJZ9	1412 aa		11.72	□□□□□ -0.53
ZEB1-222	ENST00000561212	TRIM26	Q12899	539 aa	Predicted RBP	11.72	□□□□□ -0.53
ZEB1-222	ENST00000561212	CLIP1	P30622	1438 aa		11.71	□□□□□ -0.53
ZEB1-222	ENST00000561212	MAGI1	Q96QZ7	1491 aa	Predicted RBP	11.68	□□□□□ -0.54
ZEB1-222	ENST00000561212	SNAPC4	Q5SXM2	1469 aa		11.67	□□□□□ -0.54
ZEB1-222	ENST00000561212	ARHGAP35	Q9NRY4	1499 aa		11.67	□□□□□ -0.54
ZEB1-222	ENST00000561212	CTTNBP2	Q8WZ74	1663 aa		11.67	□□□□□ -0.54
ZEB1-222	ENST00000561212	ARAP1	Q96P48	1450 aa		11.66	□□□□□ -0.54
ZEB1-222	ENST00000561212	HRC	P23327	699 aa		11.65	□□□□□ -0.54
ZEB1-222	ENST00000561212	SYNJ2	O15056	1496 aa		11.64	□□□□□ -0.55
ZEB1-222	ENST00000561212	GRIN2A	Q12879	1464 aa		11.64	□□□□□ -0.55
ZEB1-222	ENST00000561212	VPS8	Q8N3P4	1428 aa		11.63	□□□□□ -0.55
ZEB1-222	ENST00000561212	SAMD9	Q5K651	1589 aa		11.6	□□□□□ -0.55
ZEB1-222	ENST00000561212	KCNA4	P22459	653 aa		11.6	□□□□□ -0.55
ZEB1-222	ENST00000561212	EFCAB5	A4FU69	1503 aa		11.59	□□□□□ -0.55
ZEB1-222	ENST00000561212	NUP160	Q12769	1436 aa		11.59	□□□□□ -0.55
ZEB1-222	ENST00000561212	KIAA0586	Q9BVV6	1533 aa		11.58	□□□□□ -0.56
ZEB1-222	ENST00000561212	IQGAP2	Q13576	1575 aa		11.57	□□□□□ -0.56
ZEB1-222	ENST00000561212	CEP170	Q5SW79	1584 aa		11.57	□□□□□ -0.56
ZEB1-222	ENST00000561212	UGGT2	Q9NYU1	1516 aa		11.56	□□□□□ -0.56
ZEB1-222	ENST00000561212	RANGAP1	P46060	587 aa	Predicted RBP	11.54	□□□□□ -0.56
ZEB1-222	ENST00000561212	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.53	□□□□□ -0.56
ZEB1-222	ENST00000561212	FHOD3	Q2V2M9	1422 aa		11.51	□□□□□ -0.57
ZEB1-222	ENST00000561212	DISP1	Q96F81	1524 aa		11.51	□□□□□ -0.57
ZEB1-222	ENST00000561212	CHD1	O14646	1710 aa		11.51	□□□□□ -0.57
ZEB1-222	ENST00000561212	MAP3K1	Q13233	1512 aa		11.49	□□□□□ -0.57
ZEB1-222	ENST00000561212		U3KPZ7	1027 aa	Predicted RBP	11.48	□□□□□ -0.57
ZEB1-222	ENST00000561212	FMN1	Q68DA7	1419 aa		11.47	□□□□□ -0.57
ZEB1-222	ENST00000561212	CASKIN1	Q8WXD9	1431 aa		11.47	□□□□□ -0.57
ZEB1-222	ENST00000561212	KIAA0556	O60303	1618 aa		11.47	□□□□□ -0.57
ZEB1-222	ENST00000561212	P3H3	Q8IVL6	736 aa		11.46	□□□□□ -0.57
ZEB1-222	ENST00000561212	PCF11	O94913	1555 aa	Known RBP	11.46	□□□□□ -0.58
ZEB1-222	ENST00000561212	FYCO1	Q9BQS8	1478 aa		11.45	□□□□□ -0.58
ZEB1-222	ENST00000561212	FBLN2	P98095	1184 aa		11.45	□□□□□ -0.58
ZEB1-222	ENST00000561212	SHROOM2	Q13796	1616 aa		11.45	□□□□□ -0.58
ZEB1-222	ENST00000561212	PPARGC1B	Q86YN6	1023 aa	Known RBP	11.44	□□□□□ -0.58
ZEB1-222	ENST00000561212	JPH4	Q96JJ6	628 aa		11.44	□□□□□ -0.58
ZEB1-222	ENST00000561212	CLASP1	Q7Z460	1538 aa		11.43	□□□□□ -0.58
ZEB1-222	ENST00000561212	LRRIQ1	Q96JM4	1722 aa		11.43	□□□□□ -0.58
ZEB1-222	ENST00000561212	TIAM1	Q13009	1591 aa		11.42	□□□□□ -0.58
ZEB1-222	ENST00000561212	KANK4	Q5T7N3	995 aa	Predicted RBP	11.42	□□□□□ -0.58
ZEB1-222	ENST00000561212	CFAP43	Q8NDM7	1665 aa		11.41	□□□□□ -0.58
ZEB1-222	ENST00000561212	ZEB1	P37275	1124 aa	Predicted RBP	11.4	□□□□□ -0.58
ZEB1-222	ENST00000561212	LRRC9	Q6ZRR7	1453 aa		11.38	□□□□□ -0.59
ZEB1-222	ENST00000561212	CARMIL2	Q6F5E8	1435 aa		11.36	□□□□□ -0.59
ZEB1-222	ENST00000561212	PRG4	Q92954	1404 aa	Predicted RBP	11.36	□□□□□ -0.59
ZEB1-222	ENST00000561212	CAPN15	O75808	1086 aa		11.36	□□□□□ -0.59
ZEB1-222	ENST00000561212	APLP2	Q06481	763 aa		11.35	□□□□□ -0.59
ZEB1-222	ENST00000561212	NUP153	P49790	1475 aa	Known RBP	11.35	□□□□□ -0.59
ZEB1-222	ENST00000561212	HECW1	Q76N89	1606 aa		11.34	□□□□□ -0.59
ZEB1-222	ENST00000561212	EPRS	P07814	1512 aa	Known RBP	11.34	□□□□□ -0.59
ZEB1-222	ENST00000561212	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.34	□□□□□ -0.59
ZEB1-222	ENST00000561212	ABCA8	O94911	1581 aa		11.34	□□□□□ -0.59
ZEB1-222	ENST00000561212	ERCC6L2	Q5T890	1561 aa		11.34	□□□□□ -0.59
ZEB1-222	ENST00000561212	MAGI3	Q5TCQ9	1506 aa		11.33	□□□□□ -0.6
ZEB1-222	ENST00000561212	RAPGEF6	Q8TEU7	1601 aa		11.33	□□□□□ -0.6
ZEB1-222	ENST00000561212	CCDC18	Q5T9S5	1454 aa		11.32	□□□□□ -0.6
ZEB1-222	ENST00000561212	PLB1	Q6P1J6	1458 aa		11.32	□□□□□ -0.6
ZEB1-222	ENST00000561212	RRBP1	Q9P2E9	1410 aa	Known RBP	11.31	□□□□□ -0.6
ZEB1-222	ENST00000561212	SLC4A2	P04920	1241 aa		11.3	□□□□□ -0.6
ZEB1-222	ENST00000561212	ARHGEF11	O15085	1522 aa		11.3	□□□□□ -0.6
ZEB1-222	ENST00000561212	TTBK1	Q5TCY1	1321 aa	Predicted RBP	11.3	□□□□□ -0.6
ZEB1-222	ENST00000561212	CDK13	Q14004	1512 aa	Known RBP	11.29	□□□□□ -0.6
ZEB1-222	ENST00000561212	DSG3	P32926	999 aa		11.29	□□□□□ -0.6
ZEB1-222	ENST00000561212	PTPRG	P23470	1445 aa		11.28	□□□□□ -0.6
ZEB1-222	ENST00000561212	PHLDB1	Q86UU1	1377 aa		11.27	□□□□□ -0.6
ZEB1-222	ENST00000561212	OSCAR	Q8IYS5	282 aa		11.26	□□□□□ -0.61
ZEB1-222	ENST00000561212	EHBP1L1	Q8N3D4	1523 aa		11.26	□□□□□ -0.61
ZEB1-222	ENST00000561212	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.25	□□□□□ -0.61
ZEB1-222	ENST00000561212	ATP10B	O94823	1461 aa		11.25	□□□□□ -0.61
ZEB1-222	ENST00000561212	MTUS2	Q5JR59	1369 aa		11.23	□□□□□ -0.61
ZEB1-222	ENST00000561212	NCOA2	Q15596	1464 aa		11.23	□□□□□ -0.61
ZEB1-222	ENST00000561212	UACA	Q9BZF9	1416 aa		11.23	□□□□□ -0.61
ZEB1-222	ENST00000561212	UHRF1BP1L	A0JNW5	1464 aa		11.22	□□□□□ -0.61
ZEB1-222	ENST00000561212	SUPT6H	Q7KZ85	1726 aa	Known RBP	11.22	□□□□□ -0.61
ZEB1-222	ENST00000561212	CCNB3	Q8WWL7	1395 aa		11.22	□□□□□ -0.61
ZEB1-222	ENST00000561212	ABCC2	Q92887	1545 aa		11.21	□□□□□ -0.61
ZEB1-222	ENST00000561212	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
ZEB1-222	ENST00000561212	CCER1	Q8TC90	406 aa	Predicted RBP	11.2	□□□□□ -0.62
ZEB1-222	ENST00000561212	TRO	Q12816	1431 aa	Predicted RBP	11.2	□□□□□ -0.62
ZEB1-222	ENST00000561212	ADCY10	Q96PN6	1610 aa		11.2	□□□□□ -0.62
ZEB1-222	ENST00000561212	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms