RNA–Protein interactions for RNA: ENST00000560424.1

SMAD3-215, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-215ENST00000560424 JPH4Q96JJ6 628 aa16.81■□□□□ 0.28
SMAD3-215ENST00000560424 KDM4FA0A1W2PPD8 638 aa16.8■□□□□ 0.28
SMAD3-215ENST00000560424 DIP2BQ9P265 1576 aa16.79■□□□□ 0.28
SMAD3-215ENST00000560424 MAPKBP1O60336 1514 aa16.79■□□□□ 0.28
SMAD3-215ENST00000560424 ERICH3Q5RHP9 1530 aa16.79■□□□□ 0.28
SMAD3-215ENST00000560424 TSPOAP1O95153 1857 aa16.74■□□□□ 0.27
SMAD3-215ENST00000560424 TOP2BQ02880 1626 aa16.71■□□□□ 0.27
SMAD3-215ENST00000560424 BIVM-ERCC5R4GMW8 1640 aa16.71■□□□□ 0.27
SMAD3-215ENST00000560424 ADCY10Q96PN6 1610 aa16.7■□□□□ 0.26
SMAD3-215ENST00000560424 RUSC2Q8N2Y8 1516 aa16.7■□□□□ 0.26
SMAD3-215ENST00000560424 ADGRL1O94910 1474 aa16.61■□□□□ 0.25
SMAD3-215ENST00000560424 TTBK1Q5TCY1 1321 aaPredicted RBP16.59■□□□□ 0.25
SMAD3-215ENST00000560424 SUPT5HO00267 1087 aaKnown RBP16.58■□□□□ 0.24
SMAD3-215ENST00000560424 KIAA0586Q9BVV6 1533 aa16.56■□□□□ 0.24
SMAD3-215ENST00000560424 PTPRGP23470 1445 aa16.54■□□□□ 0.24
SMAD3-215ENST00000560424 HECW2Q9P2P5 1572 aa16.54■□□□□ 0.24
SMAD3-215ENST00000560424 PLB1Q6P1J6 1458 aa16.52■□□□□ 0.23
SMAD3-215ENST00000560424 ABCC2Q92887 1545 aa16.5■□□□□ 0.23
SMAD3-215ENST00000560424 ASXL2Q76L83 1435 aa16.5■□□□□ 0.23
SMAD3-215ENST00000560424 GLI2P10070 1586 aa16.49■□□□□ 0.23
SMAD3-215ENST00000560424 CARMIL2Q6F5E8 1435 aa16.49■□□□□ 0.23
SMAD3-215ENST00000560424 CUL7Q14999 1698 aa16.47■□□□□ 0.23
SMAD3-215ENST00000560424 PPRC1Q5VV67 1664 aaKnown RBP16.47■□□□□ 0.23
SMAD3-215ENST00000560424 TNIKQ9UKE5 1360 aa16.47■□□□□ 0.23
SMAD3-215ENST00000560424 TEX14Q8IWB6 1497 aa16.46■□□□□ 0.23
SMAD3-215ENST00000560424 KIF27Q86VH2 1401 aa16.42■□□□□ 0.22
SMAD3-215ENST00000560424 IGF1RP08069 1367 aa16.41■□□□□ 0.22
SMAD3-215ENST00000560424 UACAQ9BZF9 1416 aa16.39■□□□□ 0.21
SMAD3-215ENST00000560424 COL17A1Q9UMD9 1497 aaPredicted RBP16.39■□□□□ 0.21
SMAD3-215ENST00000560424 EPRSP07814 1512 aaKnown RBP16.39■□□□□ 0.21
SMAD3-215ENST00000560424 MAP3K4Q9Y6R4 1608 aa16.38■□□□□ 0.21
SMAD3-215ENST00000560424 UHRF1BP1LA0JNW5 1464 aa16.38■□□□□ 0.21
SMAD3-215ENST00000560424 FBXO41Q8TF61 875 aa16.38■□□□□ 0.21
SMAD3-215ENST00000560424 IQGAP2Q13576 1575 aa16.35■□□□□ 0.21
SMAD3-215ENST00000560424 CARMIL1Q5VZK9 1371 aa16.34■□□□□ 0.21
SMAD3-215ENST00000560424 ZCCHC11Q5TAX3 1644 aaKnown RBP16.31■□□□□ 0.2
SMAD3-215ENST00000560424 KDM5BQ9UGL1 1544 aa16.31■□□□□ 0.2
SMAD3-215ENST00000560424 DISP1Q96F81 1524 aa16.26■□□□□ 0.19
SMAD3-215ENST00000560424 WDR7Q9Y4E6 1490 aa16.26■□□□□ 0.19
SMAD3-215ENST00000560424 CD109Q6YHK3 1445 aa16.24■□□□□ 0.19
SMAD3-215ENST00000560424 KCNH8Q96L42 1107 aa16.22■□□□□ 0.19
SMAD3-215ENST00000560424 KIF21BO75037 1637 aa16.22■□□□□ 0.19
SMAD3-215ENST00000560424 CFAP43Q8NDM7 1665 aa16.21■□□□□ 0.19
SMAD3-215ENST00000560424 MAGI3Q5TCQ9 1506 aa16.2■□□□□ 0.18
SMAD3-215ENST00000560424 KIAA0556O60303 1618 aa16.2■□□□□ 0.18
SMAD3-215ENST00000560424 UGGT2Q9NYU1 1516 aa16.19■□□□□ 0.18
SMAD3-215ENST00000560424 RAPGEF2Q9Y4G8 1499 aa16.15■□□□□ 0.18
SMAD3-215ENST00000560424 PTPRMP28827 1452 aa16.13■□□□□ 0.17
SMAD3-215ENST00000560424 LMTK3Q96Q04 1460 aa16.12■□□□□ 0.17
SMAD3-215ENST00000560424 FAM9AQ8IZU1 332 aaPredicted RBP16.11■□□□□ 0.17
SMAD3-215ENST00000560424 ARID4BQ4LE39 1312 aaPredicted RBP16.1■□□□□ 0.17
SMAD3-215ENST00000560424 GOLGA3Q08378 1498 aa16.1■□□□□ 0.17
SMAD3-215ENST00000560424 ARAP3Q8WWN8 1544 aa16.09■□□□□ 0.17
SMAD3-215ENST00000560424 PCF11O94913 1555 aaKnown RBP16.08■□□□□ 0.16
SMAD3-215ENST00000560424 ADAMTSL3P82987 1691 aa16.07■□□□□ 0.16
SMAD3-215ENST00000560424 ABCA8O94911 1581 aa16.05■□□□□ 0.16
SMAD3-215ENST00000560424 CTTNBP2Q8WZ74 1663 aa16.05■□□□□ 0.16
SMAD3-215ENST00000560424 PHLDB1Q86UU1 1377 aa16.04■□□□□ 0.16
SMAD3-215ENST00000560424 ARID3CA6NKF2 412 aa16.02■□□□□ 0.16
SMAD3-215ENST00000560424 BCORL1Q5H9F3 1711 aa16.02■□□□□ 0.15
SMAD3-215ENST00000560424 MADDQ8WXG6 1647 aa16.01■□□□□ 0.15
SMAD3-215ENST00000560424 RAPGEF3O95398 923 aa16.01■□□□□ 0.15
SMAD3-215ENST00000560424 PLPPR3Q6T4P5 718 aa15.99■□□□□ 0.15
SMAD3-215ENST00000560424 ABCA9Q8IUA7 1624 aa15.97■□□□□ 0.15
SMAD3-215ENST00000560424 RIMS1Q86UR5 1692 aaKnown RBP15.96■□□□□ 0.15
SMAD3-215ENST00000560424 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.96■□□□□ 0.15
SMAD3-215ENST00000560424 HSPA2P54652 639 aa15.96■□□□□ 0.15
SMAD3-215ENST00000560424 HNRNPUL2Q1KMD3 747 aaKnown RBP15.96■□□□□ 0.15
SMAD3-215ENST00000560424 CERKQ8TCT0 537 aa15.96■□□□□ 0.15
SMAD3-215ENST00000560424 DISP3Q9P2K9 1392 aa15.96■□□□□ 0.15
SMAD3-215ENST00000560424 NEO1Q92859 1461 aa15.96■□□□□ 0.14
SMAD3-215ENST00000560424 POGZQ7Z3K3 1410 aa15.93■□□□□ 0.14
SMAD3-215ENST00000560424 ATP10BO94823 1461 aa15.92■□□□□ 0.14
SMAD3-215ENST00000560424 SOCS7O14512 581 aa15.91■□□□□ 0.14
SMAD3-215ENST00000560424 ARHGEF40Q8TER5 1519 aa15.9■□□□□ 0.14
SMAD3-215ENST00000560424 P3H3Q8IVL6 736 aa15.9■□□□□ 0.14
SMAD3-215ENST00000560424 FRMPD1Q5SYB0 1578 aa15.89■□□□□ 0.13
SMAD3-215ENST00000560424 FANCAO15360 1455 aa15.88■□□□□ 0.13
SMAD3-215ENST00000560424 AKNAQ7Z591 1439 aa15.86■□□□□ 0.13
SMAD3-215ENST00000560424 DENND4BO75064 1496 aaPredicted RBP15.86■□□□□ 0.13
SMAD3-215ENST00000560424 ILDR2Q71H61 639 aa15.86■□□□□ 0.13
SMAD3-215ENST00000560424 RAPGEF6Q8TEU7 1601 aa15.83■□□□□ 0.13
SMAD3-215ENST00000560424 MLECQ14165 292 aa15.83■□□□□ 0.12
SMAD3-215ENST00000560424 CFAP74Q9C0B2 1584 aa15.83■□□□□ 0.12
SMAD3-215ENST00000560424 EFCAB5A4FU69 1503 aa15.81■□□□□ 0.12
SMAD3-215ENST00000560424 RICTORQ6R327 1708 aa15.81■□□□□ 0.12
SMAD3-215ENST00000560424 FER1L4A9Z1Z3 1794 aa15.8■□□□□ 0.12
SMAD3-215ENST00000560424 ZFYVE16Q7Z3T8 1539 aa15.8■□□□□ 0.12
SMAD3-215ENST00000560424 DMRT2Q9Y5R5 561 aa15.8■□□□□ 0.12
SMAD3-215ENST00000560424 PRXQ9BXM0 1461 aa15.79■□□□□ 0.12
SMAD3-215ENST00000560424 FHOD3Q2V2M9 1422 aa15.79■□□□□ 0.12
SMAD3-215ENST00000560424 SPATA31D1Q6ZQQ2 1576 aa15.79■□□□□ 0.12
SMAD3-215ENST00000560424 PLEKHD1A6NEE1 506 aa15.78■□□□□ 0.12
SMAD3-215ENST00000560424 TTC37Q6PGP7 1564 aa15.76■□□□□ 0.11
SMAD3-215ENST00000560424 ZMYM4Q5VZL5 1548 aa15.76■□□□□ 0.11
SMAD3-215ENST00000560424 PREX1Q8TCU6 1659 aa15.76■□□□□ 0.11
SMAD3-215ENST00000560424 MAGI2Q86UL8 1455 aa15.75■□□□□ 0.11
SMAD3-215ENST00000560424 YEATS2Q9ULM3 1422 aa15.75■□□□□ 0.11
SMAD3-215ENST00000560424 SAMD9Q5K651 1589 aa15.74■□□□□ 0.11
SMAD3-215ENST00000560424 NUP153P49790 1475 aaKnown RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 1069.5 ms