RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 TNNT3P45378 269 aaPredicted RBP18.07■□□□□ 0.48
CSPG4P12-202ENST00000559989 NCBP3Q53F19 620 aaKnown RBP18.07■□□□□ 0.48
CSPG4P12-202ENST00000559989 KIAA2012Q0VF49 1180 aa18.06■□□□□ 0.48
CSPG4P12-202ENST00000559989 NOC3LQ8WTT2 800 aaKnown RBP18.03■□□□□ 0.48
CSPG4P12-202ENST00000559989 RTN4Q9NQC3 1192 aaKnown RBP18.02■□□□□ 0.47
CSPG4P12-202ENST00000559989 FBLN2P98095 1184 aa18.01■□□□□ 0.47
CSPG4P12-202ENST00000559989 ZNF777Q9ULD5 760 aaPredicted RBP18.01■□□□□ 0.47
CSPG4P12-202ENST00000559989 CLSTN1O94985 981 aa18■□□□□ 0.47
CSPG4P12-202ENST00000559989 CALRP27797 417 aaKnown RBP17.99■□□□□ 0.47
CSPG4P12-202ENST00000559989 DRC7Q8IY82 874 aa17.99■□□□□ 0.47
CSPG4P12-202ENST00000559989 HSP90AB1P08238 724 aaKnown RBP17.98■□□□□ 0.47
CSPG4P12-202ENST00000559989 PNNQ9H307 717 aaKnown RBP17.98■□□□□ 0.47
CSPG4P12-202ENST00000559989 DDX10Q13206 875 aaKnown RBP17.98■□□□□ 0.47
CSPG4P12-202ENST00000559989 MRS2Q9HD23 443 aa17.94■□□□□ 0.46
CSPG4P12-202ENST00000559989 USP35Q9P2H5 1018 aa17.94■□□□□ 0.46
CSPG4P12-202ENST00000559989 GOLGA6L4A6NEF3 574 aa17.94■□□□□ 0.46
CSPG4P12-202ENST00000559989 FGD1P98174 961 aa17.93■□□□□ 0.46
CSPG4P12-202ENST00000559989 GOLGA6L1Q8N7Z2 621 aa17.93■□□□□ 0.46
CSPG4P12-202ENST00000559989 PLPPR3Q6T4P5 718 aa17.92■□□□□ 0.46
CSPG4P12-202ENST00000559989 PRM3Q9NNZ6 103 aa17.92■□□□□ 0.46
CSPG4P12-202ENST00000559989 FTSJ3Q8IY81 847 aaKnown RBP17.92■□□□□ 0.46
CSPG4P12-202ENST00000559989 IRX6P78412 446 aaPredicted RBP17.91■□□□□ 0.46
CSPG4P12-202ENST00000559989 SETQ01105 290 aaPredicted RBP17.9■□□□□ 0.46
CSPG4P12-202ENST00000559989 TAOK2Q9UL54 1235 aa17.88■□□□□ 0.45
CSPG4P12-202ENST00000559989 ZBTB7CA1YPR0 619 aa17.88■□□□□ 0.45
CSPG4P12-202ENST00000559989 A0A0U1RQG5 324 aaPredicted RBP17.87■□□□□ 0.45
CSPG4P12-202ENST00000559989 NAP1L2Q9ULW6 460 aaPredicted RBP17.86■□□□□ 0.45
CSPG4P12-202ENST00000559989 NOP58Q9Y2X3 529 aaKnown RBP17.85■□□□□ 0.45
CSPG4P12-202ENST00000559989 CHMP4BQ9H444 224 aaKnown RBP17.84■□□□□ 0.45
CSPG4P12-202ENST00000559989 KCNJ4P48050 445 aa17.84■□□□□ 0.45
CSPG4P12-202ENST00000559989 LAS1LQ9Y4W2 734 aaKnown RBP17.83■□□□□ 0.44
CSPG4P12-202ENST00000559989 PTMSP20962 102 aa17.83■□□□□ 0.44
CSPG4P12-202ENST00000559989 GOLGA2Q08379 1002 aa17.81■□□□□ 0.44
CSPG4P12-202ENST00000559989 C14orf37Q86TY3 774 aa17.81■□□□□ 0.44
CSPG4P12-202ENST00000559989 NPHP1O15259 732 aa17.81■□□□□ 0.44
CSPG4P12-202ENST00000559989 ARID3CA6NKF2 412 aa17.81■□□□□ 0.44
CSPG4P12-202ENST00000559989 HSCBQ8IWL3 235 aa17.81■□□□□ 0.44
CSPG4P12-202ENST00000559989 MCCP23508 829 aa17.78■□□□□ 0.44
CSPG4P12-202ENST00000559989 CFAP53Q96M91 514 aa17.78■□□□□ 0.44
CSPG4P12-202ENST00000559989 OS9Q13438 667 aaPredicted RBP17.77■□□□□ 0.44
CSPG4P12-202ENST00000559989 P3H3Q8IVL6 736 aa17.76■□□□□ 0.43
CSPG4P12-202ENST00000559989 GNL2Q13823 731 aaKnown RBP17.75■□□□□ 0.43
CSPG4P12-202ENST00000559989 CFAP44Q96MT7 982 aa17.75■□□□□ 0.43
CSPG4P12-202ENST00000559989 TPM4P67936 248 aa17.74■□□□□ 0.43
CSPG4P12-202ENST00000559989 ARID4BQ4LE39 1312 aaPredicted RBP17.73■□□□□ 0.43
CSPG4P12-202ENST00000559989 HAP1P54257 671 aaPredicted RBP17.73■□□□□ 0.43
CSPG4P12-202ENST00000559989 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.72■□□□□ 0.43
CSPG4P12-202ENST00000559989 MS4A1P11836 297 aa17.72■□□□□ 0.43
CSPG4P12-202ENST00000559989 KDM2AQ9Y2K7 1162 aa17.7■□□□□ 0.42
CSPG4P12-202ENST00000559989 NPM1P06748 294 aaKnown RBP eCLIP17.67■□□□□ 0.42
CSPG4P12-202ENST00000559989 HTATSF1O43719 755 aaKnown RBP17.66■□□□□ 0.42
CSPG4P12-202ENST00000559989 ARID3AQ99856 593 aa17.66■□□□□ 0.42
CSPG4P12-202ENST00000559989 SYAP1Q96A49 352 aaPredicted RBP17.65■□□□□ 0.42
CSPG4P12-202ENST00000559989 PLEKHG5O94827 1062 aa17.65■□□□□ 0.42
CSPG4P12-202ENST00000559989 DEKP35659 375 aaKnown RBP17.64■□□□□ 0.41
CSPG4P12-202ENST00000559989 MAPK8IP3Q9UPT6 1336 aa17.63■□□□□ 0.41
CSPG4P12-202ENST00000559989 GBP4Q96PP9 640 aa17.62■□□□□ 0.41
CSPG4P12-202ENST00000559989 ISY1Q9ULR0 285 aaKnown RBP17.62■□□□□ 0.41
CSPG4P12-202ENST00000559989 EIF4G2P78344 907 aaKnown RBP eCLIP17.62■□□□□ 0.41
CSPG4P12-202ENST00000559989 CEP89Q96ST8 783 aa17.61■□□□□ 0.41
CSPG4P12-202ENST00000559989 RGS3P49796 1198 aa17.61■□□□□ 0.41
CSPG4P12-202ENST00000559989 CDCA8Q53HL2 280 aa17.6■□□□□ 0.41
CSPG4P12-202ENST00000559989 CCDC34Q96HJ3 373 aa17.6■□□□□ 0.41
CSPG4P12-202ENST00000559989 PPP4R2Q9NY27 417 aa17.6■□□□□ 0.41
CSPG4P12-202ENST00000559989 PPP1R15AO75807 674 aaPredicted RBP17.58■□□□□ 0.41
CSPG4P12-202ENST00000559989 KNSTRNQ9Y448 316 aa17.57■□□□□ 0.4
CSPG4P12-202ENST00000559989 SUPT16HQ9Y5B9 1047 aaKnown RBP17.56■□□□□ 0.4
CSPG4P12-202ENST00000559989 NUDCQ9Y266 331 aa17.55■□□□□ 0.4
CSPG4P12-202ENST00000559989 CSPP1Q1MSJ5 1256 aa17.54■□□□□ 0.4
CSPG4P12-202ENST00000559989 RRP12Q5JTH9 1297 aaKnown RBP17.54■□□□□ 0.4
CSPG4P12-202ENST00000559989 TPM3P06753 285 aa17.53■□□□□ 0.4
CSPG4P12-202ENST00000559989 PDE4CQ08493 712 aa17.53■□□□□ 0.4
CSPG4P12-202ENST00000559989 KIAA1211Q6ZU35 1233 aa17.53■□□□□ 0.4
CSPG4P12-202ENST00000559989 FRAT1Q92837 279 aaPredicted RBP17.52■□□□□ 0.4
CSPG4P12-202ENST00000559989 MIER1Q8N108 512 aa17.52■□□□□ 0.39
CSPG4P12-202ENST00000559989 TSPY4P0CV99 314 aa17.51■□□□□ 0.39
CSPG4P12-202ENST00000559989 TSPY10P0CW01 314 aa17.51■□□□□ 0.39
CSPG4P12-202ENST00000559989 GPS2Q13227 327 aa17.51■□□□□ 0.39
CSPG4P12-202ENST00000559989 SPRYD3Q8NCJ5 442 aa17.51■□□□□ 0.39
CSPG4P12-202ENST00000559989 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.51■□□□□ 0.39
CSPG4P12-202ENST00000559989 PHF14O94880 888 aa17.48■□□□□ 0.39
CSPG4P12-202ENST00000559989 CCDC70Q6NSX1 233 aa17.48■□□□□ 0.39
CSPG4P12-202ENST00000559989 PATL2C9JE40 543 aaKnown RBP17.48■□□□□ 0.39
CSPG4P12-202ENST00000559989 HSP90AA2PQ14568 343 aaPredicted RBP17.48■□□□□ 0.39
CSPG4P12-202ENST00000559989 CHIC2Q9UKJ5 165 aa17.48■□□□□ 0.39
CSPG4P12-202ENST00000559989 KRI1Q8N9T8 703 aaKnown RBP17.44■□□□□ 0.38
CSPG4P12-202ENST00000559989 GOLGA6L3A6NEY3 463 aa17.43■□□□□ 0.38
CSPG4P12-202ENST00000559989 HSP90B1P14625 803 aaKnown RBP17.43■□□□□ 0.38
CSPG4P12-202ENST00000559989 NEUROD2Q15784 382 aa17.42■□□□□ 0.38
CSPG4P12-202ENST00000559989 TSR1Q2NL82 804 aaKnown RBP17.42■□□□□ 0.38
CSPG4P12-202ENST00000559989 ZNF771Q7L3S4 317 aaPredicted RBP17.41■□□□□ 0.38
CSPG4P12-202ENST00000559989 CSRNP3Q8WYN3 585 aa17.41■□□□□ 0.38
CSPG4P12-202ENST00000559989 GZF1Q9H116 711 aaPredicted RBP17.4■□□□□ 0.38
CSPG4P12-202ENST00000559989 TEX35Q5T0J7 233 aa17.4■□□□□ 0.38
CSPG4P12-202ENST00000559989 CREBRFQ8IUR6 639 aa17.39■□□□□ 0.37
CSPG4P12-202ENST00000559989 RASSF8Q8NHQ8 419 aa17.38■□□□□ 0.37
CSPG4P12-202ENST00000559989 NOM1Q5C9Z4 860 aaKnown RBP17.38■□□□□ 0.37
CSPG4P12-202ENST00000559989 RSPH6AQ9H0K4 717 aa17.37■□□□□ 0.37
CSPG4P12-202ENST00000559989 HIRIP3Q9BW71 556 aaPredicted RBP17.37■□□□□ 0.37
CSPG4P12-202ENST00000559989 TPM2P07951 284 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms