RNA–Protein interactions for RNA: ENST00000558639.5

PSMA4-208, Transcript of proteasome subunit alpha 4, humanhuman

TSL 3

Gene PSMA4, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMA4-208ENST00000558639 CREBZFQ9NS37 354 aa14.39□□□□□ -0.11
PSMA4-208ENST00000558639 PLCB2Q00722 1185 aa14.38□□□□□ -0.11
PSMA4-208ENST00000558639 GSE1Q14687 1217 aa14.38□□□□□ -0.11
PSMA4-208ENST00000558639 PITPNM1O00562 1244 aa14.37□□□□□ -0.11
PSMA4-208ENST00000558639 RGL2O15211 777 aa14.35□□□□□ -0.11
PSMA4-208ENST00000558639 NCAPD3P42695 1498 aa14.32□□□□□ -0.12
PSMA4-208ENST00000558639 NUBP1P53384 320 aa14.32□□□□□ -0.12
PSMA4-208ENST00000558639 DCAF8Q5TAQ9 597 aa14.31□□□□□ -0.12
PSMA4-208ENST00000558639 DNAJC5Q9H3Z4 198 aa14.31□□□□□ -0.12
PSMA4-208ENST00000558639 ATAD2BQ9ULI0 1458 aa14.3□□□□□ -0.12
PSMA4-208ENST00000558639 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.29□□□□□ -0.12
PSMA4-208ENST00000558639 ERCC6Q03468 1493 aa14.28□□□□□ -0.12
PSMA4-208ENST00000558639 FAM212AQ96EL1 285 aa14.28□□□□□ -0.12
PSMA4-208ENST00000558639 BBXQ8WY36 941 aaPredicted RBP14.27□□□□□ -0.13
PSMA4-208ENST00000558639 NPM1P06748 294 aaKnown RBP eCLIP14.26□□□□□ -0.13
PSMA4-208ENST00000558639 MNX1P50219 401 aaPredicted RBP14.26□□□□□ -0.13
PSMA4-208ENST00000558639 SMARCA4P51532 1647 aa14.23□□□□□ -0.13
PSMA4-208ENST00000558639 SMARCA2P51531 1590 aa14.22□□□□□ -0.13
PSMA4-208ENST00000558639 HAP1P54257 671 aaPredicted RBP14.21□□□□□ -0.13
PSMA4-208ENST00000558639 CHGAP10645 457 aaKnown RBP14.18□□□□□ -0.14
PSMA4-208ENST00000558639 BAZ1AQ9NRL2 1556 aaPredicted RBP14.17□□□□□ -0.14
PSMA4-208ENST00000558639 TAOK2Q9UL54 1235 aa14.17□□□□□ -0.14
PSMA4-208ENST00000558639 BAZ1BQ9UIG0 1483 aaKnown RBP14.17□□□□□ -0.14
PSMA4-208ENST00000558639 NESP48681 1621 aa14.16□□□□□ -0.14
PSMA4-208ENST00000558639 RASEFQ8IZ41 740 aa14.16□□□□□ -0.14
PSMA4-208ENST00000558639 CUX2O14529 1486 aa14.15□□□□□ -0.14
PSMA4-208ENST00000558639 HMGXB3Q12766 1538 aa14.15□□□□□ -0.14
PSMA4-208ENST00000558639 CHADLQ6NUI6 762 aa14.13□□□□□ -0.15
PSMA4-208ENST00000558639 PAXIP1Q6ZW49 1069 aaPredicted RBP14.11□□□□□ -0.15
PSMA4-208ENST00000558639 MROH2BQ7Z745 1585 aa14.1□□□□□ -0.15
PSMA4-208ENST00000558639 RIOK3O14730 519 aaKnown RBP14.1□□□□□ -0.15
PSMA4-208ENST00000558639 CFAP44Q96MT7 982 aa14.1□□□□□ -0.15
PSMA4-208ENST00000558639 CHRM1P11229 460 aaPredicted RBP14.09□□□□□ -0.15
PSMA4-208ENST00000558639 RNF25Q96BH1 459 aaPredicted RBP14.09□□□□□ -0.15
PSMA4-208ENST00000558639 FARP1Q9Y4F1 1045 aaPredicted RBP14.07□□□□□ -0.16
PSMA4-208ENST00000558639 HS6ST3Q8IZP7 471 aa14.06□□□□□ -0.16
PSMA4-208ENST00000558639 SPRYD3Q8NCJ5 442 aa14.06□□□□□ -0.16
PSMA4-208ENST00000558639 PRKAR2AP13861 404 aaKnown RBP14.05□□□□□ -0.16
PSMA4-208ENST00000558639 PEG3Q9GZU2 1588 aa14.02□□□□□ -0.16
PSMA4-208ENST00000558639 VGFO15240 615 aaPredicted RBP14.02□□□□□ -0.17
PSMA4-208ENST00000558639 PYGBP11216 843 aa14.01□□□□□ -0.17
PSMA4-208ENST00000558639 FXR2P51116 673 aaKnown RBP eCLIP14□□□□□ -0.17
PSMA4-208ENST00000558639 TSPYL2Q9H2G4 693 aaPredicted RBP14□□□□□ -0.17
PSMA4-208ENST00000558639 VSIG10Q8N0Z9 540 aa13.99□□□□□ -0.17
PSMA4-208ENST00000558639 PDS5BQ9NTI5 1447 aa13.98□□□□□ -0.17
PSMA4-208ENST00000558639 LAMC3Q9Y6N6 1575 aa13.98□□□□□ -0.17
PSMA4-208ENST00000558639 CHRDL2Q6WN34 429 aa13.98□□□□□ -0.17
PSMA4-208ENST00000558639 STK25O00506 426 aa13.95□□□□□ -0.18
PSMA4-208ENST00000558639 CADPSQ9ULU8 1353 aa13.95□□□□□ -0.18
PSMA4-208ENST00000558639 WIZO95785 1651 aa13.94□□□□□ -0.18
PSMA4-208ENST00000558639 PAK3O75914 559 aaPredicted RBP13.91□□□□□ -0.18
PSMA4-208ENST00000558639 KIF21AQ7Z4S6 1674 aa13.91□□□□□ -0.18
PSMA4-208ENST00000558639 SGIP1Q9BQI5 828 aa13.9□□□□□ -0.18
PSMA4-208ENST00000558639 THOC2Q8NI27 1593 aaKnown RBP13.9□□□□□ -0.18
PSMA4-208ENST00000558639 ZNF467Q7Z7K2 595 aaPredicted RBP13.88□□□□□ -0.19
PSMA4-208ENST00000558639 PIP4P2Q8N4L2 257 aa13.88□□□□□ -0.19
PSMA4-208ENST00000558639 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.87□□□□□ -0.19
PSMA4-208ENST00000558639 POTEHQ6S545 545 aa13.87□□□□□ -0.19
PSMA4-208ENST00000558639 ZFP91Q96JP5 570 aaPredicted RBP13.87□□□□□ -0.19
PSMA4-208ENST00000558639 STK24Q9Y6E0 443 aa13.87□□□□□ -0.19
PSMA4-208ENST00000558639 BCL11BQ9C0K0 894 aaPredicted RBP13.85□□□□□ -0.19
PSMA4-208ENST00000558639 TSHZ2Q9NRE2 1034 aa13.83□□□□□ -0.2
PSMA4-208ENST00000558639 MRC2Q9UBG0 1479 aa13.82□□□□□ -0.2
PSMA4-208ENST00000558639 CCDC61Q9Y6R9 512 aa13.82□□□□□ -0.2
PSMA4-208ENST00000558639 RSF1Q96T23 1441 aaPredicted RBP13.81□□□□□ -0.2
PSMA4-208ENST00000558639 NKX1-1Q15270 411 aaPredicted RBP13.8□□□□□ -0.2
PSMA4-208ENST00000558639 RYDENQ9NUL5 291 aaKnown RBP13.79□□□□□ -0.2
PSMA4-208ENST00000558639 KDM2AQ9Y2K7 1162 aa13.78□□□□□ -0.2
PSMA4-208ENST00000558639 CEP164Q9UPV0 1460 aa13.78□□□□□ -0.2
PSMA4-208ENST00000558639 PDAP1Q13442 181 aaKnown RBP13.77□□□□□ -0.21
PSMA4-208ENST00000558639 FANCD2Q9BXW9 1451 aa13.77□□□□□ -0.21
PSMA4-208ENST00000558639 GTPBP6O43824 516 aaPredicted RBP13.75□□□□□ -0.21
PSMA4-208ENST00000558639 PCDHB8Q9UN66 801 aa13.75□□□□□ -0.21
PSMA4-208ENST00000558639 PCDHB13Q9Y5F0 798 aa13.75□□□□□ -0.21
PSMA4-208ENST00000558639 ZNF579Q8NAF0 562 aaKnown RBP13.74□□□□□ -0.21
PSMA4-208ENST00000558639 BCANQ96GW7 911 aa13.74□□□□□ -0.21
PSMA4-208ENST00000558639 WDR62O43379 1518 aa13.73□□□□□ -0.21
PSMA4-208ENST00000558639 CFTRP13569 1480 aa13.72□□□□□ -0.21
PSMA4-208ENST00000558639 TOP2AP11388 1531 aaKnown RBP13.7□□□□□ -0.22
PSMA4-208ENST00000558639 CD44P16070 742 aaKnown RBP13.69□□□□□ -0.22
PSMA4-208ENST00000558639 PSEN1P49768 467 aa13.69□□□□□ -0.22
PSMA4-208ENST00000558639 ZRANB1Q9UGI0 708 aa13.69□□□□□ -0.22
PSMA4-208ENST00000558639 MAP3K13O43283 966 aa13.67□□□□□ -0.22
PSMA4-208ENST00000558639 KIF12Q96FN5 646 aa13.66□□□□□ -0.22
PSMA4-208ENST00000558639 IFNL1Q8IU54 200 aa13.65□□□□□ -0.22
PSMA4-208ENST00000558639 CCDC88BA6NC98 1476 aa13.63□□□□□ -0.23
PSMA4-208ENST00000558639 URB2Q14146 1524 aaKnown RBP13.63□□□□□ -0.23
PSMA4-208ENST00000558639 PHF12Q96QT6 1004 aa13.56□□□□□ -0.24
PSMA4-208ENST00000558639 CABP2Q9NPB3 220 aa13.53□□□□□ -0.24
PSMA4-208ENST00000558639 C19orf67A6NJJ6 358 aa13.5□□□□□ -0.25
PSMA4-208ENST00000558639 PRDM2Q13029 1718 aa13.5□□□□□ -0.25
PSMA4-208ENST00000558639 ZNF608Q9ULD9 1512 aaPredicted RBP13.49□□□□□ -0.25
PSMA4-208ENST00000558639 IFT140Q96RY7 1462 aa13.49□□□□□ -0.25
PSMA4-208ENST00000558639 SOX12O15370 315 aa13.49□□□□□ -0.25
PSMA4-208ENST00000558639 MFRPQ9BY79 579 aa13.49□□□□□ -0.25
PSMA4-208ENST00000558639 TOPBP1Q92547 1522 aa13.49□□□□□ -0.25
PSMA4-208ENST00000558639 EFCAB3Q8N7B9 438 aa13.48□□□□□ -0.25
PSMA4-208ENST00000558639 NLRP6P59044 892 aa13.47□□□□□ -0.25
PSMA4-208ENST00000558639 GOLGA2Q08379 1002 aa13.47□□□□□ -0.25
PSMA4-208ENST00000558639 ABCC8Q09428 1581 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms