RNA–Protein interactions for RNA: ENST00000558314.5

TPM1-211, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-211ENST00000558314 RUSC2Q8N2Y8 1516 aa26.9■■□□□ 1.9
TPM1-211ENST00000558314 CUL7Q14999 1698 aa26.83■■□□□ 1.89
TPM1-211ENST00000558314 TTBK1Q5TCY1 1321 aaPredicted RBP26.81■■□□□ 1.88
TPM1-211ENST00000558314 CARMIL1Q5VZK9 1371 aa26.8■■□□□ 1.88
TPM1-211ENST00000558314 KIAA0586Q9BVV6 1533 aa26.78■■□□□ 1.88
TPM1-211ENST00000558314 NPM1P06748 294 aaKnown RBP eCLIP26.77■■□□□ 1.88
TPM1-211ENST00000558314 FAM69CQ0P6D2 419 aa26.64■■□□□ 1.86
TPM1-211ENST00000558314 ADCY10Q96PN6 1610 aa26.61■■□□□ 1.85
TPM1-211ENST00000558314 PTPRGP23470 1445 aa26.6■■□□□ 1.85
TPM1-211ENST00000558314 KIF13AQ9H1H9 1805 aa26.58■■□□□ 1.85
TPM1-211ENST00000558314 CARMIL2Q6F5E8 1435 aa26.58■■□□□ 1.85
TPM1-211ENST00000558314 AEBP2Q6ZN18 517 aaPredicted RBP26.58■■□□□ 1.85
TPM1-211ENST00000558314 IQGAP2Q13576 1575 aa26.56■■□□□ 1.84
TPM1-211ENST00000558314 RAPGEF2Q9Y4G8 1499 aa26.54■■□□□ 1.84
TPM1-211ENST00000558314 TNIKQ9UKE5 1360 aa26.53■■□□□ 1.84
TPM1-211ENST00000558314 ABCC10Q5T3U5 1492 aa26.53■■□□□ 1.84
TPM1-211ENST00000558314 MAPKBP1O60336 1514 aa26.51■■□□□ 1.83
TPM1-211ENST00000558314 DIP2BQ9P265 1576 aa26.46■■□□□ 1.83
TPM1-211ENST00000558314 DISP1Q96F81 1524 aa26.41■■□□□ 1.82
TPM1-211ENST00000558314 ABCC2Q92887 1545 aa26.38■■□□□ 1.81
TPM1-211ENST00000558314 TSPOAP1O95153 1857 aa26.37■■□□□ 1.81
TPM1-211ENST00000558314 UACAQ9BZF9 1416 aa26.37■■□□□ 1.81
TPM1-211ENST00000558314 UGGT2Q9NYU1 1516 aa26.34■■□□□ 1.81
TPM1-211ENST00000558314 ASXL2Q76L83 1435 aa26.32■■□□□ 1.8
TPM1-211ENST00000558314 KIAA0556O60303 1618 aa26.31■■□□□ 1.8
TPM1-211ENST00000558314 UHRF1BP1LA0JNW5 1464 aa26.29■■□□□ 1.8
TPM1-211ENST00000558314 PLB1Q6P1J6 1458 aa26.28■■□□□ 1.8
TPM1-211ENST00000558314 CTTNBP2Q8WZ74 1663 aa26.27■■□□□ 1.8
TPM1-211ENST00000558314 KDM6BO15054 1643 aa26.26■■□□□ 1.79
TPM1-211ENST00000558314 PRXQ9BXM0 1461 aa26.23■■□□□ 1.79
TPM1-211ENST00000558314 GOLGA3Q08378 1498 aa26.2■■□□□ 1.78
TPM1-211ENST00000558314 P3H3Q8IVL6 736 aa26.19■■□□□ 1.78
TPM1-211ENST00000558314 ZCCHC11Q5TAX3 1644 aaKnown RBP26.18■■□□□ 1.78
TPM1-211ENST00000558314 KDM5BQ9UGL1 1544 aa26.18■■□□□ 1.78
TPM1-211ENST00000558314 CSRNP3Q8WYN3 585 aa26.16■■□□□ 1.78
TPM1-211ENST00000558314 FAM9AQ8IZU1 332 aaPredicted RBP26.15■■□□□ 1.78
TPM1-211ENST00000558314 EPRSP07814 1512 aaKnown RBP26.14■■□□□ 1.77
TPM1-211ENST00000558314 GLI2P10070 1586 aa26.13■■□□□ 1.77
TPM1-211ENST00000558314 ARID3CA6NKF2 412 aa26.13■■□□□ 1.77
TPM1-211ENST00000558314 RANGAP1P46060 587 aaPredicted RBP26.13■■□□□ 1.77
TPM1-211ENST00000558314 KCNH8Q96L42 1107 aa26.1■■□□□ 1.77
TPM1-211ENST00000558314 PPRC1Q5VV67 1664 aaKnown RBP26.07■■□□□ 1.76
TPM1-211ENST00000558314 WDR7Q9Y4E6 1490 aa26.05■■□□□ 1.76
TPM1-211ENST00000558314 ABCA8O94911 1581 aa26.03■■□□□ 1.76
TPM1-211ENST00000558314 MAP3K4Q9Y6R4 1608 aa26■■□□□ 1.75
TPM1-211ENST00000558314 TEX14Q8IWB6 1497 aa25.99■■□□□ 1.75
TPM1-211ENST00000558314 EHMT2Q96KQ7 1210 aa25.99■■□□□ 1.75
TPM1-211ENST00000558314 KDM4FA0A1W2PPD8 638 aa25.97■■□□□ 1.75
TPM1-211ENST00000558314 EEA1Q15075 1411 aa25.97■■□□□ 1.75
TPM1-211ENST00000558314 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.95■■□□□ 1.74
TPM1-211ENST00000558314 HNRNPUL2Q1KMD3 747 aaKnown RBP25.95■■□□□ 1.74
TPM1-211ENST00000558314 COL17A1Q9UMD9 1497 aaPredicted RBP25.95■■□□□ 1.74
TPM1-211ENST00000558314 CD109Q6YHK3 1445 aa25.93■■□□□ 1.74
TPM1-211ENST00000558314 SAMD9Q5K651 1589 aa25.87■■□□□ 1.73
TPM1-211ENST00000558314 ATP10BO94823 1461 aa25.86■■□□□ 1.73
TPM1-211ENST00000558314 FHOD3Q2V2M9 1422 aa25.86■■□□□ 1.73
TPM1-211ENST00000558314 CFAP43Q8NDM7 1665 aa25.84■■□□□ 1.73
TPM1-211ENST00000558314 RAPGEF6Q8TEU7 1601 aa25.82■■□□□ 1.72
TPM1-211ENST00000558314 MAGI3Q5TCQ9 1506 aa25.81■■□□□ 1.72
TPM1-211ENST00000558314 ADGRL1O94910 1474 aa25.79■■□□□ 1.72
TPM1-211ENST00000558314 UBTFP17480 764 aaKnown RBP25.78■■□□□ 1.72
TPM1-211ENST00000558314 CHIC1Q5VXU3 224 aa25.78■■□□□ 1.72
TPM1-211ENST00000558314 KIF21BO75037 1637 aa25.75■■□□□ 1.71
TPM1-211ENST00000558314 NUP153P49790 1475 aaKnown RBP25.72■■□□□ 1.71
TPM1-211ENST00000558314 ATP1B4Q9UN42 357 aaPredicted RBP25.69■■□□□ 1.7
TPM1-211ENST00000558314 PLEKHD1A6NEE1 506 aa25.68■■□□□ 1.7
TPM1-211ENST00000558314 ABCA9Q8IUA7 1624 aa25.66■■□□□ 1.7
TPM1-211ENST00000558314 EFCAB5A4FU69 1503 aa25.65■■□□□ 1.7
TPM1-211ENST00000558314 RAPGEF3O95398 923 aa25.62■■□□□ 1.69
TPM1-211ENST00000558314 ARAP3Q8WWN8 1544 aa25.59■■□□□ 1.69
TPM1-211ENST00000558314 PHLDB1Q86UU1 1377 aa25.56■■□□□ 1.68
TPM1-211ENST00000558314 CDK13Q14004 1512 aaKnown RBP25.55■■□□□ 1.68
TPM1-211ENST00000558314 NEO1Q92859 1461 aa25.53■■□□□ 1.68
TPM1-211ENST00000558314 ARID4BQ4LE39 1312 aaPredicted RBP25.5■■□□□ 1.67
TPM1-211ENST00000558314 ARHGAP35Q9NRY4 1499 aa25.49■■□□□ 1.67
TPM1-211ENST00000558314 FMN1Q68DA7 1419 aa25.47■■□□□ 1.67
TPM1-211ENST00000558314 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.47■■□□□ 1.67
TPM1-211ENST00000558314 FANCAO15360 1455 aa25.45■■□□□ 1.66
TPM1-211ENST00000558314 AKNAQ7Z591 1439 aa25.45■■□□□ 1.66
TPM1-211ENST00000558314 TTC37Q6PGP7 1564 aa25.44■■□□□ 1.66
TPM1-211ENST00000558314 HECW1Q76N89 1606 aa25.43■■□□□ 1.66
TPM1-211ENST00000558314 DENND4BO75064 1496 aaPredicted RBP25.42■■□□□ 1.66
TPM1-211ENST00000558314 FRMPD1Q5SYB0 1578 aa25.41■■□□□ 1.66
TPM1-211ENST00000558314 CDK11AQ9UQ88 783 aaPredicted RBP25.4■■□□□ 1.66
TPM1-211ENST00000558314 HECW2Q9P2P5 1572 aa25.39■■□□□ 1.66
TPM1-211ENST00000558314 CFAP74Q9C0B2 1584 aa25.38■■□□□ 1.65
TPM1-211ENST00000558314 PLPPR3Q6T4P5 718 aa25.33■■□□□ 1.65
TPM1-211ENST00000558314 PLCH2O75038 1416 aa25.31■■□□□ 1.64
TPM1-211ENST00000558314 RICTORQ6R327 1708 aa25.31■■□□□ 1.64
TPM1-211ENST00000558314 SCAPERQ9BY12 1400 aa25.3■■□□□ 1.64
TPM1-211ENST00000558314 ARHGEF40Q8TER5 1519 aa25.29■■□□□ 1.64
TPM1-211ENST00000558314 EFCAB2Q5VUJ9 269 aa25.29■■□□□ 1.64
TPM1-211ENST00000558314 KIF14Q15058 1648 aa25.28■■□□□ 1.64
TPM1-211ENST00000558314 CLIP1P30622 1438 aa25.28■■□□□ 1.64
TPM1-211ENST00000558314 PTPRMP28827 1452 aa25.28■■□□□ 1.64
TPM1-211ENST00000558314 MLECQ14165 292 aa25.27■■□□□ 1.64
TPM1-211ENST00000558314 TROQ12816 1431 aaPredicted RBP25.27■■□□□ 1.64
TPM1-211ENST00000558314 ADAMTSL3P82987 1691 aa25.26■■□□□ 1.63
TPM1-211ENST00000558314 MYT1LQ9UL68 1186 aa25.26■■□□□ 1.63
TPM1-211ENST00000558314 YEATS2Q9ULM3 1422 aa25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms