RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 GOLGA3Q08378 1498 aa21.04■□□□□ 0.96
SHMT2-227ENST00000557269 DNAJC5Q9H3Z4 198 aa21.03■□□□□ 0.96
SHMT2-227ENST00000557269 UBTFP17480 764 aaKnown RBP20.99■□□□□ 0.95
SHMT2-227ENST00000557269 JPH4Q96JJ6 628 aa20.99■□□□□ 0.95
SHMT2-227ENST00000557269 CTTNBP2Q8WZ74 1663 aa20.99■□□□□ 0.95
SHMT2-227ENST00000557269 LOC105371045A0A1W2PR82 267 aa20.98■□□□□ 0.95
SHMT2-227ENST00000557269 IQGAP2Q13576 1575 aa20.97■□□□□ 0.95
SHMT2-227ENST00000557269 SHROOM2Q13796 1616 aa20.97■□□□□ 0.95
SHMT2-227ENST00000557269 ERCC6L2Q5T890 1561 aa20.93■□□□□ 0.94
SHMT2-227ENST00000557269 PRG4Q92954 1404 aaPredicted RBP20.92■□□□□ 0.94
SHMT2-227ENST00000557269 ARHGEF11O15085 1522 aa20.9■□□□□ 0.94
SHMT2-227ENST00000557269 UGGT2Q9NYU1 1516 aa20.89■□□□□ 0.94
SHMT2-227ENST00000557269 RANGAP1P46060 587 aaPredicted RBP20.89■□□□□ 0.93
SHMT2-227ENST00000557269 RIMBP3CA6NJZ7 1639 aa20.87■□□□□ 0.93
SHMT2-227ENST00000557269 RIMBP3BA6NNM3 1639 aa20.87■□□□□ 0.93
SHMT2-227ENST00000557269 RIMBP3Q9UFD9 1639 aa20.87■□□□□ 0.93
SHMT2-227ENST00000557269 DISP1Q96F81 1524 aa20.86■□□□□ 0.93
SHMT2-227ENST00000557269 TNIKQ9UKE5 1360 aa20.85■□□□□ 0.93
SHMT2-227ENST00000557269 KIAA0556O60303 1618 aa20.79■□□□□ 0.92
SHMT2-227ENST00000557269 P3H3Q8IVL6 736 aa20.79■□□□□ 0.92
SHMT2-227ENST00000557269 CARMIL2Q6F5E8 1435 aa20.78■□□□□ 0.92
SHMT2-227ENST00000557269 ARAP1Q96P48 1450 aa20.78■□□□□ 0.92
SHMT2-227ENST00000557269 SAMD9Q5K651 1589 aa20.77■□□□□ 0.92
SHMT2-227ENST00000557269 TTBK1Q5TCY1 1321 aaPredicted RBP20.75■□□□□ 0.91
SHMT2-227ENST00000557269 CYB5RLQ6IPT4 315 aa20.73■□□□□ 0.91
SHMT2-227ENST00000557269 ARHGAP35Q9NRY4 1499 aa20.73■□□□□ 0.91
SHMT2-227ENST00000557269 FHOD3Q2V2M9 1422 aa20.7■□□□□ 0.9
SHMT2-227ENST00000557269 EFCAB5A4FU69 1503 aa20.7■□□□□ 0.9
SHMT2-227ENST00000557269 PTPRGP23470 1445 aa20.7■□□□□ 0.9
SHMT2-227ENST00000557269 CLIP1P30622 1438 aa20.7■□□□□ 0.9
SHMT2-227ENST00000557269 CEP162Q5TB80 1403 aa20.7■□□□□ 0.9
SHMT2-227ENST00000557269 PLB1Q6P1J6 1458 aa20.59■□□□□ 0.89
SHMT2-227ENST00000557269 UACAQ9BZF9 1416 aa20.57■□□□□ 0.88
SHMT2-227ENST00000557269 ABCA8O94911 1581 aa20.55■□□□□ 0.88
SHMT2-227ENST00000557269 ADCY10Q96PN6 1610 aa20.55■□□□□ 0.88
SHMT2-227ENST00000557269 UHRF1BP1LA0JNW5 1464 aa20.51■□□□□ 0.87
SHMT2-227ENST00000557269 ABCC2Q92887 1545 aa20.51■□□□□ 0.87
SHMT2-227ENST00000557269 FMN1Q68DA7 1419 aa20.51■□□□□ 0.87
SHMT2-227ENST00000557269 RAPGEF6Q8TEU7 1601 aa20.49■□□□□ 0.87
SHMT2-227ENST00000557269 ARID3CA6NKF2 412 aa20.47■□□□□ 0.87
SHMT2-227ENST00000557269 NUP153P49790 1475 aaKnown RBP20.46■□□□□ 0.87
SHMT2-227ENST00000557269 PCF11O94913 1555 aaKnown RBP20.44■□□□□ 0.86
SHMT2-227ENST00000557269 ATP1B4Q9UN42 357 aaPredicted RBP20.43■□□□□ 0.86
SHMT2-227ENST00000557269 CASKIN1Q8WXD9 1431 aa20.43■□□□□ 0.86
SHMT2-227ENST00000557269 KDM5BQ9UGL1 1544 aa20.43■□□□□ 0.86
SHMT2-227ENST00000557269 ATP10BO94823 1461 aa20.41■□□□□ 0.86
SHMT2-227ENST00000557269 VPS8Q8N3P4 1428 aa20.4■□□□□ 0.86
SHMT2-227ENST00000557269 ZCCHC11Q5TAX3 1644 aaKnown RBP20.39■□□□□ 0.86
SHMT2-227ENST00000557269 NPM1P06748 294 aaKnown RBP eCLIP20.39■□□□□ 0.85
SHMT2-227ENST00000557269 HECW1Q76N89 1606 aa20.38■□□□□ 0.85
SHMT2-227ENST00000557269 FYCO1Q9BQS8 1478 aa20.37■□□□□ 0.85
SHMT2-227ENST00000557269 LRRIQ1Q96JM4 1722 aa20.37■□□□□ 0.85
SHMT2-227ENST00000557269 CDK13Q14004 1512 aaKnown RBP20.37■□□□□ 0.85
SHMT2-227ENST00000557269 EPRSP07814 1512 aaKnown RBP20.36■□□□□ 0.85
SHMT2-227ENST00000557269 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.33■□□□□ 0.85
SHMT2-227ENST00000557269 HNRNPUL2Q1KMD3 747 aaKnown RBP20.33■□□□□ 0.85
SHMT2-227ENST00000557269 ASXL2Q76L83 1435 aa20.32■□□□□ 0.84
SHMT2-227ENST00000557269 MAPKBP1O60336 1514 aa20.31■□□□□ 0.84
SHMT2-227ENST00000557269 CCDC18Q5T9S5 1454 aa20.26■□□□□ 0.83
SHMT2-227ENST00000557269 WDR7Q9Y4E6 1490 aa20.24■□□□□ 0.83
SHMT2-227ENST00000557269 MAGI3Q5TCQ9 1506 aa20.23■□□□□ 0.83
SHMT2-227ENST00000557269 PLEKHD1A6NEE1 506 aa20.23■□□□□ 0.83
SHMT2-227ENST00000557269 KCNH8Q96L42 1107 aa20.22■□□□□ 0.83
SHMT2-227ENST00000557269 TIAM1Q13009 1591 aa20.2■□□□□ 0.82
SHMT2-227ENST00000557269 ABCC10Q5T3U5 1492 aa20.19■□□□□ 0.82
SHMT2-227ENST00000557269 CDK11AQ9UQ88 783 aaPredicted RBP20.18■□□□□ 0.82
SHMT2-227ENST00000557269 CFAP43Q8NDM7 1665 aa20.18■□□□□ 0.82
SHMT2-227ENST00000557269 DIP2BQ9P265 1576 aa20.17■□□□□ 0.82
SHMT2-227ENST00000557269 KANK4Q5T7N3 995 aaPredicted RBP20.17■□□□□ 0.82
SHMT2-227ENST00000557269 TROQ12816 1431 aaPredicted RBP20.17■□□□□ 0.82
SHMT2-227ENST00000557269 TRHP20396 242 aaPredicted RBP20.16■□□□□ 0.82
SHMT2-227ENST00000557269 FAM69CQ0P6D2 419 aa20.16■□□□□ 0.82
SHMT2-227ENST00000557269 MAP3K1Q13233 1512 aa20.16■□□□□ 0.82
SHMT2-227ENST00000557269 KIF13AQ9H1H9 1805 aa20.14■□□□□ 0.81
SHMT2-227ENST00000557269 KIF14Q15058 1648 aa20.13■□□□□ 0.81
SHMT2-227ENST00000557269 APLP2Q06481 763 aa20.12■□□□□ 0.81
SHMT2-227ENST00000557269 GLI2P10070 1586 aa20.12■□□□□ 0.81
SHMT2-227ENST00000557269 LRRC9Q6ZRR7 1453 aa20.11■□□□□ 0.81
SHMT2-227ENST00000557269 MTUS2Q5JR59 1369 aa20.11■□□□□ 0.81
SHMT2-227ENST00000557269 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.09■□□□□ 0.81
SHMT2-227ENST00000557269 EHBP1L1Q8N3D4 1523 aa20.08■□□□□ 0.81
SHMT2-227ENST00000557269 TTC37Q6PGP7 1564 aa20.07■□□□□ 0.8
SHMT2-227ENST00000557269 ABCA9Q8IUA7 1624 aa20.06■□□□□ 0.8
SHMT2-227ENST00000557269 PPARGC1BQ86YN6 1023 aaKnown RBP20.06■□□□□ 0.8
SHMT2-227ENST00000557269 MAP3K4Q9Y6R4 1608 aa20.05■□□□□ 0.8
SHMT2-227ENST00000557269 CD109Q6YHK3 1445 aa20.02■□□□□ 0.8
SHMT2-227ENST00000557269 NCOA2Q15596 1464 aa20■□□□□ 0.79
SHMT2-227ENST00000557269 TSPOAP1O95153 1857 aa19.99■□□□□ 0.79
SHMT2-227ENST00000557269 PPRC1Q5VV67 1664 aaKnown RBP19.99■□□□□ 0.79
SHMT2-227ENST00000557269 SUPT6HQ7KZ85 1726 aaKnown RBP19.99■□□□□ 0.79
SHMT2-227ENST00000557269 GPATCH8Q9UKJ3 1502 aaKnown RBP19.97■□□□□ 0.79
SHMT2-227ENST00000557269 PLCH2O75038 1416 aa19.96■□□□□ 0.79
SHMT2-227ENST00000557269 CCNB3Q8WWL7 1395 aa19.95■□□□□ 0.78
SHMT2-227ENST00000557269 CDC42BPAQ5VT25 1732 aa19.93■□□□□ 0.78
SHMT2-227ENST00000557269 MYO5CQ9NQX4 1742 aa19.93■□□□□ 0.78
SHMT2-227ENST00000557269 CDC42BPBQ9Y5S2 1711 aa19.92■□□□□ 0.78
SHMT2-227ENST00000557269 PHLDB1Q86UU1 1377 aa19.92■□□□□ 0.78
SHMT2-227ENST00000557269 PREX2Q70Z35 1606 aa19.91■□□□□ 0.78
SHMT2-227ENST00000557269 FANCAO15360 1455 aa19.89■□□□□ 0.77
SHMT2-227ENST00000557269 ARHGAP5Q13017 1502 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms