RNA–Protein interactions for RNA: ENST00000556737.1

SHMT2-224, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-224ENST00000556737 PRG4Q92954 1404 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-224ENST00000556737 CARMIL1Q5VZK9 1371 aa17.79■□□□□ 0.44
SHMT2-224ENST00000556737 JPH4Q96JJ6 628 aa17.74■□□□□ 0.43
SHMT2-224ENST00000556737 IQGAP2Q13576 1575 aa17.72■□□□□ 0.43
SHMT2-224ENST00000556737 RAPGEF2Q9Y4G8 1499 aa17.71■□□□□ 0.43
SHMT2-224ENST00000556737 ADCY10Q96PN6 1610 aa17.66■□□□□ 0.42
SHMT2-224ENST00000556737 CTTNBP2Q8WZ74 1663 aa17.65■□□□□ 0.42
SHMT2-224ENST00000556737 PRXQ9BXM0 1461 aa17.64■□□□□ 0.41
SHMT2-224ENST00000556737 UGGT2Q9NYU1 1516 aa17.62■□□□□ 0.41
SHMT2-224ENST00000556737 DISP1Q96F81 1524 aa17.62■□□□□ 0.41
SHMT2-224ENST00000556737 TRHP20396 242 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-224ENST00000556737 KIAA0556O60303 1618 aa17.58■□□□□ 0.41
SHMT2-224ENST00000556737 KIF13AQ9H1H9 1805 aa17.57■□□□□ 0.4
SHMT2-224ENST00000556737 MAPKBP1O60336 1514 aa17.57■□□□□ 0.4
SHMT2-224ENST00000556737 CARMIL2Q6F5E8 1435 aa17.56■□□□□ 0.4
SHMT2-224ENST00000556737 TNIKQ9UKE5 1360 aa17.54■□□□□ 0.4
SHMT2-224ENST00000556737 PTPRGP23470 1445 aa17.53■□□□□ 0.4
SHMT2-224ENST00000556737 EEA1Q15075 1411 aa17.51■□□□□ 0.39
SHMT2-224ENST00000556737 DIP2BQ9P265 1576 aa17.5■□□□□ 0.39
SHMT2-224ENST00000556737 UHRF1BP1LA0JNW5 1464 aa17.49■□□□□ 0.39
SHMT2-224ENST00000556737 ABCC2Q92887 1545 aa17.47■□□□□ 0.39
SHMT2-224ENST00000556737 ABCC10Q5T3U5 1492 aa17.46■□□□□ 0.39
SHMT2-224ENST00000556737 CSRNP3Q8WYN3 585 aa17.44■□□□□ 0.38
SHMT2-224ENST00000556737 UACAQ9BZF9 1416 aa17.44■□□□□ 0.38
SHMT2-224ENST00000556737 GOLGA3Q08378 1498 aa17.44■□□□□ 0.38
SHMT2-224ENST00000556737 KIF21BO75037 1637 aa17.43■□□□□ 0.38
SHMT2-224ENST00000556737 SAMD9Q5K651 1589 aa17.42■□□□□ 0.38
SHMT2-224ENST00000556737 TTBK1Q5TCY1 1321 aaPredicted RBP17.41■□□□□ 0.38
SHMT2-224ENST00000556737 ZCCHC11Q5TAX3 1644 aaKnown RBP17.4■□□□□ 0.38
SHMT2-224ENST00000556737 KDM5BQ9UGL1 1544 aa17.4■□□□□ 0.38
SHMT2-224ENST00000556737 ABCA8O94911 1581 aa17.4■□□□□ 0.38
SHMT2-224ENST00000556737 NPM1P06748 294 aaKnown RBP eCLIP17.39■□□□□ 0.37
SHMT2-224ENST00000556737 CHIC1Q5VXU3 224 aa17.39■□□□□ 0.37
SHMT2-224ENST00000556737 PLB1Q6P1J6 1458 aa17.37■□□□□ 0.37
SHMT2-224ENST00000556737 ASXL2Q76L83 1435 aa17.36■□□□□ 0.37
SHMT2-224ENST00000556737 GLI2P10070 1586 aa17.33■□□□□ 0.37
SHMT2-224ENST00000556737 FAM69CQ0P6D2 419 aa17.32■□□□□ 0.36
SHMT2-224ENST00000556737 FAM9AQ8IZU1 332 aaPredicted RBP17.32■□□□□ 0.36
SHMT2-224ENST00000556737 PPRC1Q5VV67 1664 aaKnown RBP17.32■□□□□ 0.36
SHMT2-224ENST00000556737 TSPOAP1O95153 1857 aa17.29■□□□□ 0.36
SHMT2-224ENST00000556737 EPRSP07814 1512 aaKnown RBP17.28■□□□□ 0.36
SHMT2-224ENST00000556737 MAP3K4Q9Y6R4 1608 aa17.28■□□□□ 0.36
SHMT2-224ENST00000556737 EFCAB5A4FU69 1503 aa17.26■□□□□ 0.35
SHMT2-224ENST00000556737 RAPGEF6Q8TEU7 1601 aa17.25■□□□□ 0.35
SHMT2-224ENST00000556737 WDR7Q9Y4E6 1490 aa17.25■□□□□ 0.35
SHMT2-224ENST00000556737 KDM6BO15054 1643 aa17.23■□□□□ 0.35
SHMT2-224ENST00000556737 FHOD3Q2V2M9 1422 aa17.22■□□□□ 0.35
SHMT2-224ENST00000556737 P3H3Q8IVL6 736 aa17.21■□□□□ 0.35
SHMT2-224ENST00000556737 ATP10BO94823 1461 aa17.18■□□□□ 0.34
SHMT2-224ENST00000556737 NUP153P49790 1475 aaKnown RBP17.18■□□□□ 0.34
SHMT2-224ENST00000556737 CFAP43Q8NDM7 1665 aa17.17■□□□□ 0.34
SHMT2-224ENST00000556737 ARHGAP35Q9NRY4 1499 aa17.12■□□□□ 0.33
SHMT2-224ENST00000556737 RANGAP1P46060 587 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-224ENST00000556737 TEX14Q8IWB6 1497 aa17.12■□□□□ 0.33
SHMT2-224ENST00000556737 MAGI3Q5TCQ9 1506 aa17.11■□□□□ 0.33
SHMT2-224ENST00000556737 ABCA9Q8IUA7 1624 aa17.1■□□□□ 0.33
SHMT2-224ENST00000556737 ARID3CA6NKF2 412 aa17.09■□□□□ 0.33
SHMT2-224ENST00000556737 EHMT2Q96KQ7 1210 aa17.09■□□□□ 0.33
SHMT2-224ENST00000556737 COL17A1Q9UMD9 1497 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-224ENST00000556737 UBTFP17480 764 aaKnown RBP17.07■□□□□ 0.32
SHMT2-224ENST00000556737 CD109Q6YHK3 1445 aa17.06■□□□□ 0.32
SHMT2-224ENST00000556737 HECW1Q76N89 1606 aa17.05■□□□□ 0.32
SHMT2-224ENST00000556737 CDK13Q14004 1512 aaKnown RBP17.04■□□□□ 0.32
SHMT2-224ENST00000556737 FMN1Q68DA7 1419 aa17.03■□□□□ 0.32
SHMT2-224ENST00000556737 LRRIQ1Q96JM4 1722 aa17.02■□□□□ 0.32
SHMT2-224ENST00000556737 KCNH8Q96L42 1107 aa17.02■□□□□ 0.32
SHMT2-224ENST00000556737 PCF11O94913 1555 aaKnown RBP16.98■□□□□ 0.31
SHMT2-224ENST00000556737 TTC37Q6PGP7 1564 aa16.98■□□□□ 0.31
SHMT2-224ENST00000556737 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.96■□□□□ 0.31
SHMT2-224ENST00000556737 ARAP3Q8WWN8 1544 aa16.96■□□□□ 0.3
SHMT2-224ENST00000556737 FRMPD1Q5SYB0 1578 aa16.94■□□□□ 0.3
SHMT2-224ENST00000556737 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-224ENST00000556737 HNRNPUL2Q1KMD3 747 aaKnown RBP16.93■□□□□ 0.3
SHMT2-224ENST00000556737 NEO1Q92859 1461 aa16.93■□□□□ 0.3
SHMT2-224ENST00000556737 KIF14Q15058 1648 aa16.91■□□□□ 0.3
SHMT2-224ENST00000556737 CFAP74Q9C0B2 1584 aa16.9■□□□□ 0.3
SHMT2-224ENST00000556737 CLIP1P30622 1438 aa16.9■□□□□ 0.3
SHMT2-224ENST00000556737 CASKIN1Q8WXD9 1431 aa16.9■□□□□ 0.3
SHMT2-224ENST00000556737 PLEKHD1A6NEE1 506 aa16.89■□□□□ 0.29
SHMT2-224ENST00000556737 FYCO1Q9BQS8 1478 aa16.88■□□□□ 0.29
SHMT2-224ENST00000556737 PHLDB1Q86UU1 1377 aa16.87■□□□□ 0.29
SHMT2-224ENST00000556737 RICTORQ6R327 1708 aa16.87■□□□□ 0.29
SHMT2-224ENST00000556737 CCDC18Q5T9S5 1454 aa16.86■□□□□ 0.29
SHMT2-224ENST00000556737 MYO5CQ9NQX4 1742 aa16.86■□□□□ 0.29
SHMT2-224ENST00000556737 FANCAO15360 1455 aa16.86■□□□□ 0.29
SHMT2-224ENST00000556737 ADGRL1O94910 1474 aa16.86■□□□□ 0.29
SHMT2-224ENST00000556737 KDM4FA0A1W2PPD8 638 aa16.85■□□□□ 0.29
SHMT2-224ENST00000556737 TROQ12816 1431 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-224ENST00000556737 AEBP2Q6ZN18 517 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-224ENST00000556737 AKNAQ7Z591 1439 aa16.81■□□□□ 0.28
SHMT2-224ENST00000556737 ATP1B4Q9UN42 357 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-224ENST00000556737 PLCH2O75038 1416 aa16.8■□□□□ 0.28
SHMT2-224ENST00000556737 CEP162Q5TB80 1403 aa16.8■□□□□ 0.28
SHMT2-224ENST00000556737 ZMYM4Q5VZL5 1548 aa16.8■□□□□ 0.28
SHMT2-224ENST00000556737 ARHGEF40Q8TER5 1519 aa16.8■□□□□ 0.28
SHMT2-224ENST00000556737 PREX2Q70Z35 1606 aa16.78■□□□□ 0.28
SHMT2-224ENST00000556737 DENND4BO75064 1496 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-224ENST00000556737 CDC42BPBQ9Y5S2 1711 aa16.76■□□□□ 0.27
SHMT2-224ENST00000556737 RAPGEF3O95398 923 aa16.76■□□□□ 0.27
SHMT2-224ENST00000556737 CDK11AQ9UQ88 783 aaPredicted RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms