RNA–Protein interactions for RNA: ENST00000556063.1

TDP1-214, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 1,076 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-214ENST00000556063 KIF21BO75037 1637 aa12.48□□□□□ -0.41
TDP1-214ENST00000556063 CEP170Q5SW79 1584 aa12.47□□□□□ -0.41
TDP1-214ENST00000556063 KIAA0586Q9BVV6 1533 aa12.46□□□□□ -0.42
TDP1-214ENST00000556063 CLASP1Q7Z460 1538 aa12.45□□□□□ -0.42
TDP1-214ENST00000556063 GOLGA3Q08378 1498 aa12.45□□□□□ -0.42
TDP1-214ENST00000556063 UBTFP17480 764 aaKnown RBP12.44□□□□□ -0.42
TDP1-214ENST00000556063 DNAJC5Q9H3Z4 198 aa12.44□□□□□ -0.42
TDP1-214ENST00000556063 JPH4Q96JJ6 628 aa12.42□□□□□ -0.42
TDP1-214ENST00000556063 CTTNBP2Q8WZ74 1663 aa12.41□□□□□ -0.42
TDP1-214ENST00000556063 IQGAP2Q13576 1575 aa12.4□□□□□ -0.42
TDP1-214ENST00000556063 EHMT2Q96KQ7 1210 aa12.4□□□□□ -0.42
TDP1-214ENST00000556063 SHROOM2Q13796 1616 aa12.37□□□□□ -0.43
TDP1-214ENST00000556063 CARMIL2Q6F5E8 1435 aa12.36□□□□□ -0.43
TDP1-214ENST00000556063 PRG4Q92954 1404 aaPredicted RBP12.36□□□□□ -0.43
TDP1-214ENST00000556063 ARHGEF11O15085 1522 aa12.34□□□□□ -0.43
TDP1-214ENST00000556063 UGGT2Q9NYU1 1516 aa12.34□□□□□ -0.43
TDP1-214ENST00000556063 TNIKQ9UKE5 1360 aa12.33□□□□□ -0.44
TDP1-214ENST00000556063 RIMBP3CA6NJZ7 1639 aa12.3□□□□□ -0.44
TDP1-214ENST00000556063 RIMBP3BA6NNM3 1639 aa12.3□□□□□ -0.44
TDP1-214ENST00000556063 RIMBP3Q9UFD9 1639 aa12.3□□□□□ -0.44
TDP1-214ENST00000556063 RANGAP1P46060 587 aaPredicted RBP12.3□□□□□ -0.44
TDP1-214ENST00000556063 LOC105371045A0A1W2PR82 267 aa12.29□□□□□ -0.44
TDP1-214ENST00000556063 EFCAB5A4FU69 1503 aa12.27□□□□□ -0.45
TDP1-214ENST00000556063 DISP1Q96F81 1524 aa12.27□□□□□ -0.45
TDP1-214ENST00000556063 ERCC6L2Q5T890 1561 aa12.26□□□□□ -0.45
TDP1-214ENST00000556063 KIAA0556O60303 1618 aa12.26□□□□□ -0.45
TDP1-214ENST00000556063 CYB5RLQ6IPT4 315 aa12.26□□□□□ -0.45
TDP1-214ENST00000556063 PTPRGP23470 1445 aa12.26□□□□□ -0.45
TDP1-214ENST00000556063 SAMD9Q5K651 1589 aa12.24□□□□□ -0.45
TDP1-214ENST00000556063 P3H3Q8IVL6 736 aa12.24□□□□□ -0.45
TDP1-214ENST00000556063 ARAP1Q96P48 1450 aa12.23□□□□□ -0.45
TDP1-214ENST00000556063 CLIP1P30622 1438 aa12.23□□□□□ -0.45
TDP1-214ENST00000556063 TTBK1Q5TCY1 1321 aaPredicted RBP12.23□□□□□ -0.45
TDP1-214ENST00000556063 ARHGAP35Q9NRY4 1499 aa12.2□□□□□ -0.46
TDP1-214ENST00000556063 CEP162Q5TB80 1403 aa12.2□□□□□ -0.46
TDP1-214ENST00000556063 FHOD3Q2V2M9 1422 aa12.19□□□□□ -0.46
TDP1-214ENST00000556063 MSH5O43196 834 aa12.18□□□□□ -0.46
TDP1-214ENST00000556063 FMN1Q68DA7 1419 aa12.18□□□□□ -0.46
TDP1-214ENST00000556063 NPM1P06748 294 aaKnown RBP eCLIP12.17□□□□□ -0.46
TDP1-214ENST00000556063 UACAQ9BZF9 1416 aa12.17□□□□□ -0.46
TDP1-214ENST00000556063 UHRF1BP1LA0JNW5 1464 aa12.14□□□□□ -0.47
TDP1-214ENST00000556063 ABCC2Q92887 1545 aa12.12□□□□□ -0.47
TDP1-214ENST00000556063 PLB1Q6P1J6 1458 aa12.12□□□□□ -0.47
TDP1-214ENST00000556063 ABCA8O94911 1581 aa12.12□□□□□ -0.47
TDP1-214ENST00000556063 RAPGEF6Q8TEU7 1601 aa12.11□□□□□ -0.47
TDP1-214ENST00000556063 ATP1B4Q9UN42 357 aaPredicted RBP12.1□□□□□ -0.47
TDP1-214ENST00000556063 ADCY10Q96PN6 1610 aa12.09□□□□□ -0.47
TDP1-214ENST00000556063 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.07□□□□□ -0.48
TDP1-214ENST00000556063 HNRNPUL2Q1KMD3 747 aaKnown RBP12.07□□□□□ -0.48
TDP1-214ENST00000556063 CASKIN1Q8WXD9 1431 aa12.07□□□□□ -0.48
TDP1-214ENST00000556063 HECW1Q76N89 1606 aa12.07□□□□□ -0.48
TDP1-214ENST00000556063 KDM5BQ9UGL1 1544 aa12.06□□□□□ -0.48
TDP1-214ENST00000556063 VPS8Q8N3P4 1428 aa12.05□□□□□ -0.48
TDP1-214ENST00000556063 NUP153P49790 1475 aaKnown RBP12.05□□□□□ -0.48
TDP1-214ENST00000556063 FYCO1Q9BQS8 1478 aa12.05□□□□□ -0.48
TDP1-214ENST00000556063 ARID3CA6NKF2 412 aa12.04□□□□□ -0.48
TDP1-214ENST00000556063 CDK11AQ9UQ88 783 aaPredicted RBP12.04□□□□□ -0.48
TDP1-214ENST00000556063 ATP10BO94823 1461 aa12.03□□□□□ -0.48
TDP1-214ENST00000556063 PCF11O94913 1555 aaKnown RBP12.03□□□□□ -0.48
TDP1-214ENST00000556063 CCDC18Q5T9S5 1454 aa12.02□□□□□ -0.48
TDP1-214ENST00000556063 ZCCHC11Q5TAX3 1644 aaKnown RBP12.02□□□□□ -0.49
TDP1-214ENST00000556063 PLEKHD1A6NEE1 506 aa12.02□□□□□ -0.49
TDP1-214ENST00000556063 APLP2Q06481 763 aa12.02□□□□□ -0.49
TDP1-214ENST00000556063 MAPKBP1O60336 1514 aa12.01□□□□□ -0.49
TDP1-214ENST00000556063 EPRSP07814 1512 aaKnown RBP12.01□□□□□ -0.49
TDP1-214ENST00000556063 ASXL2Q76L83 1435 aa12□□□□□ -0.49
TDP1-214ENST00000556063 CDK13Q14004 1512 aaKnown RBP11.97□□□□□ -0.49
TDP1-214ENST00000556063 WDR7Q9Y4E6 1490 aa11.97□□□□□ -0.49
TDP1-214ENST00000556063 TRHP20396 242 aaPredicted RBP11.96□□□□□ -0.49
TDP1-214ENST00000556063 KCNH8Q96L42 1107 aa11.95□□□□□ -0.5
TDP1-214ENST00000556063 FAM69CQ0P6D2 419 aa11.94□□□□□ -0.5
TDP1-214ENST00000556063 MAP3K1Q13233 1512 aa11.94□□□□□ -0.5
TDP1-214ENST00000556063 ABCC10Q5T3U5 1492 aa11.94□□□□□ -0.5
TDP1-214ENST00000556063 LRRIQ1Q96JM4 1722 aa11.94□□□□□ -0.5
TDP1-214ENST00000556063 MTUS2Q5JR59 1369 aa11.93□□□□□ -0.5
TDP1-214ENST00000556063 TROQ12816 1431 aaPredicted RBP11.93□□□□□ -0.5
TDP1-214ENST00000556063 TIAM1Q13009 1591 aa11.92□□□□□ -0.5
TDP1-214ENST00000556063 CFAP43Q8NDM7 1665 aa11.91□□□□□ -0.5
TDP1-214ENST00000556063 GLI2P10070 1586 aa11.9□□□□□ -0.5
TDP1-214ENST00000556063 DIP2BQ9P265 1576 aa11.9□□□□□ -0.5
TDP1-214ENST00000556063 EHBP1L1Q8N3D4 1523 aa11.88□□□□□ -0.51
TDP1-214ENST00000556063 KIF14Q15058 1648 aa11.88□□□□□ -0.51
TDP1-214ENST00000556063 KIF13AQ9H1H9 1805 aa11.87□□□□□ -0.51
TDP1-214ENST00000556063 LRRC9Q6ZRR7 1453 aa11.87□□□□□ -0.51
TDP1-214ENST00000556063 ABCA9Q8IUA7 1624 aa11.86□□□□□ -0.51
TDP1-214ENST00000556063 CD109Q6YHK3 1445 aa11.86□□□□□ -0.51
TDP1-214ENST00000556063 MAGI3Q5TCQ9 1506 aa11.85□□□□□ -0.51
TDP1-214ENST00000556063 SUPT6HQ7KZ85 1726 aaKnown RBP11.84□□□□□ -0.51
TDP1-214ENST00000556063 KANK4Q5T7N3 995 aaPredicted RBP11.84□□□□□ -0.51
TDP1-214ENST00000556063 PIAS4Q8N2W9 510 aaPredicted RBP11.84□□□□□ -0.51
TDP1-214ENST00000556063 TEX14Q8IWB6 1497 aa11.83□□□□□ -0.52
TDP1-214ENST00000556063 MAP3K4Q9Y6R4 1608 aa11.83□□□□□ -0.52
TDP1-214ENST00000556063 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.83□□□□□ -0.52
TDP1-214ENST00000556063 CCNB3Q8WWL7 1395 aa11.82□□□□□ -0.52
TDP1-214ENST00000556063 TSPOAP1O95153 1857 aa11.82□□□□□ -0.52
TDP1-214ENST00000556063 MYO5CQ9NQX4 1742 aa11.8□□□□□ -0.52
TDP1-214ENST00000556063 TTC37Q6PGP7 1564 aa11.8□□□□□ -0.52
TDP1-214ENST00000556063 PLCH2O75038 1416 aa11.8□□□□□ -0.52
TDP1-214ENST00000556063 EFCAB2Q5VUJ9 269 aa11.8□□□□□ -0.52
TDP1-214ENST00000556063 NCOA2Q15596 1464 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms