RNA–Protein interactions for RNA: ENST00000555880.5

TDP1-213, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5 BASIC

Gene TDP1, Length 1,894 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-213ENST00000555880 TOP2BQ02880 1626 aa10.59□□□□□ -0.71
TDP1-213ENST00000555880 BIVM-ERCC5R4GMW8 1640 aa10.56□□□□□ -0.72
TDP1-213ENST00000555880 VPS8Q8N3P4 1428 aa10.55□□□□□ -0.72
TDP1-213ENST00000555880 RAPGEF2Q9Y4G8 1499 aa10.53□□□□□ -0.72
TDP1-213ENST00000555880 ERICH3Q5RHP9 1530 aa10.51□□□□□ -0.73
TDP1-213ENST00000555880 RBM42Q9BTD8 480 aaKnown RBP10.51□□□□□ -0.73
TDP1-213ENST00000555880 CC2D2AQ9P2K1 1620 aa10.5□□□□□ -0.73
TDP1-213ENST00000555880 DIEXFQ68CQ4 756 aaKnown RBP10.5□□□□□ -0.73
TDP1-213ENST00000555880 ATXN8OSP0DMR3 200 aa10.49□□□□□ -0.73
TDP1-213ENST00000555880 POTEHQ6S545 545 aa10.47□□□□□ -0.73
TDP1-213ENST00000555880 PRXQ9BXM0 1461 aa10.45□□□□□ -0.74
TDP1-213ENST00000555880 PRDM2Q13029 1718 aa10.45□□□□□ -0.74
TDP1-213ENST00000555880 CFTRP13569 1480 aa10.45□□□□□ -0.74
TDP1-213ENST00000555880 ZBTB12Q9Y330 459 aaPredicted RBP10.44□□□□□ -0.74
TDP1-213ENST00000555880 KIF27Q86VH2 1401 aa10.44□□□□□ -0.74
TDP1-213ENST00000555880 CUX1P39880 1505 aa10.44□□□□□ -0.74
TDP1-213ENST00000555880 CENPBP07199 599 aaPredicted RBP10.44□□□□□ -0.74
TDP1-213ENST00000555880 RANGAP1P46060 587 aaPredicted RBP10.43□□□□□ -0.74
TDP1-213ENST00000555880 CADPSQ9ULU8 1353 aa10.43□□□□□ -0.74
TDP1-213ENST00000555880 ZNF316A6NFI3 1004 aaPredicted RBP10.42□□□□□ -0.74
TDP1-213ENST00000555880 PELP1Q8IZL8 1130 aaKnown RBP10.41□□□□□ -0.74
TDP1-213ENST00000555880 OSCARQ8IYS5 282 aa10.4□□□□□ -0.74
TDP1-213ENST00000555880 ACIN1Q9UKV3 1341 aaKnown RBP10.4□□□□□ -0.74
TDP1-213ENST00000555880 ARAP1Q96P48 1450 aa10.39□□□□□ -0.75
TDP1-213ENST00000555880 NEUROD1Q13562 356 aa10.34□□□□□ -0.75
TDP1-213ENST00000555880 CLSPNQ9HAW4 1339 aa10.34□□□□□ -0.75
TDP1-213ENST00000555880 CUX2O14529 1486 aa10.31□□□□□ -0.76
TDP1-213ENST00000555880 FANCD2Q9BXW9 1451 aa10.3□□□□□ -0.76
TDP1-213ENST00000555880 ARHGAP35Q9NRY4 1499 aa10.3□□□□□ -0.76
TDP1-213ENST00000555880 AKT1S1Q96B36 256 aa10.3□□□□□ -0.76
TDP1-213ENST00000555880 RRBP1Q9P2E9 1410 aaKnown RBP10.29□□□□□ -0.76
TDP1-213ENST00000555880 CHRDL2Q6WN34 429 aa10.29□□□□□ -0.76
TDP1-213ENST00000555880 KANK4Q5T7N3 995 aaPredicted RBP10.28□□□□□ -0.76
TDP1-213ENST00000555880 FGD5Q6ZNL6 1462 aa10.27□□□□□ -0.77
TDP1-213ENST00000555880 GTF3C3Q9Y5Q9 886 aa10.27□□□□□ -0.77
TDP1-213ENST00000555880 DHX57Q6P158 1386 aaKnown RBP10.27□□□□□ -0.77
TDP1-213ENST00000555880 IGF1RP08069 1367 aa10.26□□□□□ -0.77
TDP1-213ENST00000555880 CCNB3Q8WWL7 1395 aa10.26□□□□□ -0.77
TDP1-213ENST00000555880 MAP3K1Q13233 1512 aa10.25□□□□□ -0.77
TDP1-213ENST00000555880 LAMC3Q9Y6N6 1575 aa10.25□□□□□ -0.77
TDP1-213ENST00000555880 FBLN2P98095 1184 aa10.25□□□□□ -0.77
TDP1-213ENST00000555880 PDS5BQ9NTI5 1447 aa10.25□□□□□ -0.77
TDP1-213ENST00000555880 MKRN4PQ13434 485 aaPredicted RBP10.24□□□□□ -0.77
TDP1-213ENST00000555880 CARMIL1Q5VZK9 1371 aa10.24□□□□□ -0.77
TDP1-213ENST00000555880 TIAM1Q13009 1591 aa10.24□□□□□ -0.77
TDP1-213ENST00000555880 NESP48681 1621 aa10.24□□□□□ -0.77
TDP1-213ENST00000555880 REM2Q8IYK8 340 aaPredicted RBP10.23□□□□□ -0.77
TDP1-213ENST00000555880 MIER1Q8N108 512 aa10.22□□□□□ -0.77
TDP1-213ENST00000555880 YTHDC1Q96MU7 727 aaKnown RBP10.22□□□□□ -0.77
TDP1-213ENST00000555880 FHAD1B1AJZ9 1412 aa10.22□□□□□ -0.77
TDP1-213ENST00000555880 DNMBPQ6XZF7 1577 aa10.21□□□□□ -0.78
TDP1-213ENST00000555880 CFAP43Q8NDM7 1665 aa10.2□□□□□ -0.78
TDP1-213ENST00000555880 LRRC9Q6ZRR7 1453 aa10.18□□□□□ -0.78
TDP1-213ENST00000555880 CUL7Q14999 1698 aa10.18□□□□□ -0.78
TDP1-213ENST00000555880 TOPBP1Q92547 1522 aa10.17□□□□□ -0.78
TDP1-213ENST00000555880 ITGAEP38570 1179 aa10.17□□□□□ -0.78
TDP1-213ENST00000555880 EFCAB5A4FU69 1503 aa10.17□□□□□ -0.78
TDP1-213ENST00000555880 ABCA10Q8WWZ4 1543 aa10.16□□□□□ -0.78
TDP1-213ENST00000555880 PCF11O94913 1555 aaKnown RBP10.16□□□□□ -0.78
TDP1-213ENST00000555880 SPDYE2BA6NHP3 402 aa10.15□□□□□ -0.78
TDP1-213ENST00000555880 SPDYE6P0CI01 402 aa10.15□□□□□ -0.78
TDP1-213ENST00000555880 SPDYE2Q495Y8 402 aa10.15□□□□□ -0.78
TDP1-213ENST00000555880 CTTNBP2Q8WZ74 1663 aa10.15□□□□□ -0.78
TDP1-213ENST00000555880 FYCO1Q9BQS8 1478 aa10.14□□□□□ -0.79
TDP1-213ENST00000555880 RAB3GAP2Q9H2M9 1393 aa10.14□□□□□ -0.79
TDP1-213ENST00000555880 PITPNM1O00562 1244 aa10.14□□□□□ -0.79
TDP1-213ENST00000555880 POLA1P09884 1462 aaPredicted RBP10.13□□□□□ -0.79
TDP1-213ENST00000555880 SETD5Q9C0A6 1442 aa10.12□□□□□ -0.79
TDP1-213ENST00000555880 RAD54L2Q9Y4B4 1467 aa10.12□□□□□ -0.79
TDP1-213ENST00000555880 URB2Q14146 1524 aaKnown RBP10.11□□□□□ -0.79
TDP1-213ENST00000555880 AQRO60306 1485 aaKnown RBP eCLIP10.11□□□□□ -0.792e-7■■■■□ 20.2
TDP1-213ENST00000555880 PHLDB1Q86UU1 1377 aa10.11□□□□□ -0.79
TDP1-213ENST00000555880 FAM50AQ14320 339 aaKnown RBP10.1□□□□□ -0.79
TDP1-213ENST00000555880 ATP1B4Q9UN42 357 aaPredicted RBP10.1□□□□□ -0.79
TDP1-213ENST00000555880 CASKIN1Q8WXD9 1431 aa10.1□□□□□ -0.79
TDP1-213ENST00000555880 MAPKBP1O60336 1514 aa10.1□□□□□ -0.79
TDP1-213ENST00000555880 FHOD3Q2V2M9 1422 aa10.09□□□□□ -0.79
TDP1-213ENST00000555880 P3H3Q8IVL6 736 aa10.09□□□□□ -0.79
TDP1-213ENST00000555880 WDR97A6NE52 1622 aa10.09□□□□□ -0.79
TDP1-213ENST00000555880 FMN1Q68DA7 1419 aa10.09□□□□□ -0.79
TDP1-213ENST00000555880 PIP4P2Q8N4L2 257 aa10.08□□□□□ -0.8
TDP1-213ENST00000555880 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.07□□□□□ -0.8
TDP1-213ENST00000555880 ZNF692Q9BU19 519 aaPredicted RBP10.06□□□□□ -0.8
TDP1-213ENST00000555880 MRC2Q9UBG0 1479 aa10.06□□□□□ -0.8
TDP1-213ENST00000555880 SSUH2Q9Y2M2 353 aa10.05□□□□□ -0.8
TDP1-213ENST00000555880 KIF21AQ7Z4S6 1674 aa10.05□□□□□ -0.8
TDP1-213ENST00000555880 ABCA5Q8WWZ7 1642 aa10.05□□□□□ -0.8
TDP1-213ENST00000555880 ERCC6Q03468 1493 aa10.05□□□□□ -0.8
TDP1-213ENST00000555880 TDRD9Q8NDG6 1382 aaKnown RBP10.04□□□□□ -0.8
TDP1-213ENST00000555880 TIMELESSQ9UNS1 1208 aa10.04□□□□□ -0.8
TDP1-213ENST00000555880 SAMD9Q5K651 1589 aa10.03□□□□□ -0.8
TDP1-213ENST00000555880 THOC2Q8NI27 1593 aaKnown RBP10.02□□□□□ -0.8
TDP1-213ENST00000555880 GAPVD1Q14C86 1478 aa10.02□□□□□ -0.81
TDP1-213ENST00000555880 SNAPC4Q5SXM2 1469 aa10.02□□□□□ -0.81
TDP1-213ENST00000555880 MTUS2Q5JR59 1369 aa10.02□□□□□ -0.81
TDP1-213ENST00000555880 FGD6Q6ZV73 1430 aa10.01□□□□□ -0.81
TDP1-213ENST00000555880 FXR2P51116 673 aaKnown RBP eCLIP10□□□□□ -0.81
TDP1-213ENST00000555880 SUPT6HQ7KZ85 1726 aaKnown RBP10□□□□□ -0.81
TDP1-213ENST00000555880 CLEC11AQ9Y240 323 aa9.98□□□□□ -0.81
TDP1-213ENST00000555880 EHBP1L1Q8N3D4 1523 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms