RNA–Protein interactions for RNA: ENST00000555535.1

SRP54-207, Transcript of signal recognition particle 54, humanhuman

TSL 4

Gene SRP54, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-207ENST00000555535 MS4A3Q96HJ5 214 aa14.47□□□□□ -0.09
SRP54-207ENST00000555535 EHMT2Q96KQ7 1210 aa14.47□□□□□ -0.09
SRP54-207ENST00000555535 POTEMA6NI47 508 aa14.46□□□□□ -0.09
SRP54-207ENST00000555535 ATMINO43313 823 aaPredicted RBP14.45□□□□□ -0.1
SRP54-207ENST00000555535 PCDH10Q9P2E7 1040 aa14.43□□□□□ -0.1
SRP54-207ENST00000555535 POTEGQ6S5H5 508 aa14.42□□□□□ -0.1
SRP54-207ENST00000555535 PROM2Q8N271 834 aa14.37□□□□□ -0.11
SRP54-207ENST00000555535 PLEKHG5O94827 1062 aa14.36□□□□□ -0.11
SRP54-207ENST00000555535 TSPYL2Q9H2G4 693 aaPredicted RBP14.36□□□□□ -0.11
SRP54-207ENST00000555535 SCUBE2Q9NQ36 999 aa14.33□□□□□ -0.12
SRP54-207ENST00000555535 CCDC61Q9Y6R9 512 aa14.33□□□□□ -0.12
SRP54-207ENST00000555535 KIF12Q96FN5 646 aa14.29□□□□□ -0.12
SRP54-207ENST00000555535 ATN1P54259 1190 aaPredicted RBP14.27□□□□□ -0.13
SRP54-207ENST00000555535 POTEJP0CG39 1038 aa14.26□□□□□ -0.13
SRP54-207ENST00000555535 TIE1P35590 1138 aa14.23□□□□□ -0.13
SRP54-207ENST00000555535 BMP2KQ9NSY1 1161 aaPredicted RBP14.2□□□□□ -0.14
SRP54-207ENST00000555535 MIER1Q8N108 512 aa14.18□□□□□ -0.14
SRP54-207ENST00000555535 FAM163AQ96GL9 167 aaPredicted RBP14.16□□□□□ -0.14
SRP54-207ENST00000555535 MAP3K13O43283 966 aa14.15□□□□□ -0.14
SRP54-207ENST00000555535 SGIP1Q9BQI5 828 aa14.12□□□□□ -0.15
SRP54-207ENST00000555535 SEC24BO95487 1268 aa14.11□□□□□ -0.15
SRP54-207ENST00000555535 RASEFQ8IZ41 740 aa14.1□□□□□ -0.15
SRP54-207ENST00000555535 ZBTB47Q9UFB7 747 aaPredicted RBP14.1□□□□□ -0.15
SRP54-207ENST00000555535 POTEFA5A3E0 1075 aa14.09□□□□□ -0.15
SRP54-207ENST00000555535 IER5LQ5T953 404 aa14.09□□□□□ -0.15
SRP54-207ENST00000555535 LCE2DQ5TA82 110 aaPredicted RBP14.08□□□□□ -0.16
SRP54-207ENST00000555535 TTLL13PA6NNM8 815 aa14.07□□□□□ -0.16
SRP54-207ENST00000555535 TRPC6Q9Y210 931 aa14.07□□□□□ -0.16
SRP54-207ENST00000555535 PLCD3Q8N3E9 789 aa14.04□□□□□ -0.16
SRP54-207ENST00000555535 PCDHB13Q9Y5F0 798 aa14□□□□□ -0.17
SRP54-207ENST00000555535 TRIM35Q9UPQ4 493 aa13.99□□□□□ -0.17
SRP54-207ENST00000555535 COLQQ9Y215 455 aaPredicted RBP13.99□□□□□ -0.17
SRP54-207ENST00000555535 FAM212AQ96EL1 285 aa13.92□□□□□ -0.18
SRP54-207ENST00000555535 NUBP1P53384 320 aa13.9□□□□□ -0.18
SRP54-207ENST00000555535 PLCG2P16885 1265 aa13.87□□□□□ -0.19
SRP54-207ENST00000555535 CDAN1Q8IWY9 1227 aa13.87□□□□□ -0.19
SRP54-207ENST00000555535 SLAIN1Q8ND83 568 aa13.87□□□□□ -0.19
SRP54-207ENST00000555535 IFNL1Q8IU54 200 aa13.86□□□□□ -0.19
SRP54-207ENST00000555535 TMEM106CQ9BVX2 250 aa13.86□□□□□ -0.19
SRP54-207ENST00000555535 ST18O60284 1047 aa13.77□□□□□ -0.21
SRP54-207ENST00000555535 IRX5P78411 483 aaPredicted RBP13.76□□□□□ -0.21
SRP54-207ENST00000555535 SNPHO15079 494 aa13.75□□□□□ -0.21
SRP54-207ENST00000555535 TMEM121BQ9BXQ6 578 aaPredicted RBP13.75□□□□□ -0.21
SRP54-207ENST00000555535 OCEL1Q9H607 264 aa13.75□□□□□ -0.21
SRP54-207ENST00000555535 DCAF8Q5TAQ9 597 aa13.68□□□□□ -0.22
SRP54-207ENST00000555535 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.68□□□□□ -0.22
SRP54-207ENST00000555535 PYGBP11216 843 aa13.61□□□□□ -0.23
SRP54-207ENST00000555535 FBXO3Q9UK99 471 aa13.61□□□□□ -0.23
SRP54-207ENST00000555535 FKBP8Q14318 412 aa13.58□□□□□ -0.24
SRP54-207ENST00000555535 ZNF467Q7Z7K2 595 aaPredicted RBP13.55□□□□□ -0.24
SRP54-207ENST00000555535 PCDHB8Q9UN66 801 aa13.55□□□□□ -0.24
SRP54-207ENST00000555535 GOLGA2Q08379 1002 aa13.54□□□□□ -0.24
SRP54-207ENST00000555535 MMRN1Q13201 1228 aa13.54□□□□□ -0.24
SRP54-207ENST00000555535 L3MBTL3Q96JM7 780 aaPredicted RBP13.54□□□□□ -0.24
SRP54-207ENST00000555535 GSE1Q14687 1217 aa13.53□□□□□ -0.24
SRP54-207ENST00000555535 C3orf67Q6ZVT6 689 aa13.53□□□□□ -0.24
SRP54-207ENST00000555535 SPNS2Q8IVW8 549 aa13.53□□□□□ -0.24
SRP54-207ENST00000555535 MKRN3Q13064 507 aaKnown RBP13.51□□□□□ -0.25
SRP54-207ENST00000555535 PDCD7Q8N8D1 485 aaKnown RBP13.47□□□□□ -0.25
SRP54-207ENST00000555535 MARVELD3Q96A59 401 aa13.47□□□□□ -0.25
SRP54-207ENST00000555535 CHRM1P11229 460 aaPredicted RBP13.44□□□□□ -0.26
SRP54-207ENST00000555535 EMP3P54852 163 aa13.43□□□□□ -0.26
SRP54-207ENST00000555535 KLHL34Q8N239 644 aa13.42□□□□□ -0.26
SRP54-207ENST00000555535 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.41□□□□□ -0.262e-8■■■□□ 16.1
SRP54-207ENST00000555535 PSEN1P49768 467 aa13.36□□□□□ -0.27
SRP54-207ENST00000555535 VASPP50552 380 aaPredicted RBP13.33□□□□□ -0.28
SRP54-207ENST00000555535 G3V3G9 751 aa13.32□□□□□ -0.28
SRP54-207ENST00000555535 PDAP1Q13442 181 aaKnown RBP13.31□□□□□ -0.28
SRP54-207ENST00000555535 ILDR1Q86SU0 546 aaPredicted RBP13.31□□□□□ -0.28
SRP54-207ENST00000555535 HS3ST6Q96QI5 342 aa13.31□□□□□ -0.28
SRP54-207ENST00000555535 FAM205CA6NFA0 338 aa13.28□□□□□ -0.28
SRP54-207ENST00000555535 KRTAP3-3Q9BYR6 98 aa13.25□□□□□ -0.29
SRP54-207ENST00000555535 KRTAP3-2Q9BYR7 98 aa13.25□□□□□ -0.29
SRP54-207ENST00000555535 BOLA1Q9Y3E2 137 aa13.23□□□□□ -0.29
SRP54-207ENST00000555535 POTEB3A0JP26 581 aa13.19□□□□□ -0.3
SRP54-207ENST00000555535 POTEBQ6S5H4 581 aa13.19□□□□□ -0.3
SRP54-207ENST00000555535 ZNF710Q8N1W2 664 aa13.19□□□□□ -0.3
SRP54-207ENST00000555535 CABP2Q9NPB3 220 aa13.18□□□□□ -0.3
SRP54-207ENST00000555535 DOK7Q18PE1 504 aa13.17□□□□□ -0.3
SRP54-207ENST00000555535 HOXB1P14653 301 aaPredicted RBP13.16□□□□□ -0.3
SRP54-207ENST00000555535 DPY19L2Q6NUT2 758 aa13.15□□□□□ -0.3
SRP54-207ENST00000555535 RIMBP2O15034 1052 aa13.14□□□□□ -0.31
SRP54-207ENST00000555535 SPOCK2Q92563 424 aa13.14□□□□□ -0.31
SRP54-207ENST00000555535 HOXB3P14651 431 aaPredicted RBP13.13□□□□□ -0.31
SRP54-207ENST00000555535 CIZ1Q9ULV3 898 aaPredicted RBP13.12□□□□□ -0.31
SRP54-207ENST00000555535 ERBB3P21860 1342 aa13.1□□□□□ -0.31
SRP54-207ENST00000555535 TRIM41Q8WV44 630 aa13.07□□□□□ -0.32
SRP54-207ENST00000555535 ZSWIM6Q9HCJ5 1215 aa13.04□□□□□ -0.32
SRP54-207ENST00000555535 RNF166Q96A37 237 aaPredicted RBP13.01□□□□□ -0.33
SRP54-207ENST00000555535 IFNLR1Q8IU57 520 aaPredicted RBP13□□□□□ -0.33
SRP54-207ENST00000555535 VARS2Q5ST30 1063 aaKnown RBP12.97□□□□□ -0.33
SRP54-207ENST00000555535 PTGER2P43116 358 aa12.96□□□□□ -0.33
SRP54-207ENST00000555535 EFCAB3Q8N7B9 438 aa12.95□□□□□ -0.34
SRP54-207ENST00000555535 MYT1LQ9UL68 1186 aa12.94□□□□□ -0.34
SRP54-207ENST00000555535 ZNF687Q8N1G0 1237 aa12.93□□□□□ -0.34
SRP54-207ENST00000555535 MICALL2Q8IY33 904 aa12.92□□□□□ -0.34
SRP54-207ENST00000555535 SOX12O15370 315 aa12.91□□□□□ -0.34
SRP54-207ENST00000555535 GPR153Q6NV75 609 aa12.86□□□□□ -0.35
SRP54-207ENST00000555535 TMEM92Q6UXU6 159 aa12.82□□□□□ -0.36
SRP54-207ENST00000555535 RIOK3O14730 519 aaKnown RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms