RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 KIF13AQ9H1H9 1805 aa18.62■□□□□ 0.57
SHMT2-215ENST00000554656 IGF1RP08069 1367 aa18.61■□□□□ 0.57
SHMT2-215ENST00000554656 KIF27Q86VH2 1401 aa18.59■□□□□ 0.57
SHMT2-215ENST00000554656 KIAA0586Q9BVV6 1533 aa18.55■□□□□ 0.56
SHMT2-215ENST00000554656 ADCY10Q96PN6 1610 aa18.55■□□□□ 0.56
SHMT2-215ENST00000554656 CARMIL1Q5VZK9 1371 aa18.47■□□□□ 0.55
SHMT2-215ENST00000554656 MAPKBP1O60336 1514 aa18.47■□□□□ 0.55
SHMT2-215ENST00000554656 DIP2BQ9P265 1576 aa18.45■□□□□ 0.54
SHMT2-215ENST00000554656 ABCC10Q5T3U5 1492 aa18.44■□□□□ 0.54
SHMT2-215ENST00000554656 IQGAP2Q13576 1575 aa18.42■□□□□ 0.54
SHMT2-215ENST00000554656 PTPRGP23470 1445 aa18.35■□□□□ 0.53
SHMT2-215ENST00000554656 FAM69CQ0P6D2 419 aa18.35■□□□□ 0.53
SHMT2-215ENST00000554656 DISP1Q96F81 1524 aa18.34■□□□□ 0.53
SHMT2-215ENST00000554656 TNIKQ9UKE5 1360 aa18.33■□□□□ 0.53
SHMT2-215ENST00000554656 NPM1P06748 294 aaKnown RBP eCLIP18.33■□□□□ 0.52
SHMT2-215ENST00000554656 TSPOAP1O95153 1857 aa18.33■□□□□ 0.52
SHMT2-215ENST00000554656 RAPGEF2Q9Y4G8 1499 aa18.32■□□□□ 0.52
SHMT2-215ENST00000554656 CARMIL2Q6F5E8 1435 aa18.32■□□□□ 0.52
SHMT2-215ENST00000554656 ABCC2Q92887 1545 aa18.3■□□□□ 0.52
SHMT2-215ENST00000554656 UGGT2Q9NYU1 1516 aa18.3■□□□□ 0.52
SHMT2-215ENST00000554656 TTBK1Q5TCY1 1321 aaPredicted RBP18.28■□□□□ 0.52
SHMT2-215ENST00000554656 AEBP2Q6ZN18 517 aaPredicted RBP18.28■□□□□ 0.52
SHMT2-215ENST00000554656 KIAA0556O60303 1618 aa18.27■□□□□ 0.52
SHMT2-215ENST00000554656 CTTNBP2Q8WZ74 1663 aa18.27■□□□□ 0.52
SHMT2-215ENST00000554656 UHRF1BP1LA0JNW5 1464 aa18.26■□□□□ 0.51
SHMT2-215ENST00000554656 PPRC1Q5VV67 1664 aaKnown RBP18.25■□□□□ 0.51
SHMT2-215ENST00000554656 KDM6BO15054 1643 aa18.25■□□□□ 0.51
SHMT2-215ENST00000554656 ASXL2Q76L83 1435 aa18.23■□□□□ 0.51
SHMT2-215ENST00000554656 UACAQ9BZF9 1416 aa18.23■□□□□ 0.51
SHMT2-215ENST00000554656 GLI2P10070 1586 aa18.21■□□□□ 0.51
SHMT2-215ENST00000554656 ZCCHC11Q5TAX3 1644 aaKnown RBP18.2■□□□□ 0.5
SHMT2-215ENST00000554656 KDM5BQ9UGL1 1544 aa18.2■□□□□ 0.5
SHMT2-215ENST00000554656 PLB1Q6P1J6 1458 aa18.2■□□□□ 0.5
SHMT2-215ENST00000554656 PRXQ9BXM0 1461 aa18.17■□□□□ 0.5
SHMT2-215ENST00000554656 MAP3K4Q9Y6R4 1608 aa18.15■□□□□ 0.5
SHMT2-215ENST00000554656 EPRSP07814 1512 aaKnown RBP18.14■□□□□ 0.49
SHMT2-215ENST00000554656 ABCA8O94911 1581 aa18.11■□□□□ 0.49
SHMT2-215ENST00000554656 GOLGA3Q08378 1498 aa18.08■□□□□ 0.49
SHMT2-215ENST00000554656 COL17A1Q9UMD9 1497 aaPredicted RBP18.07■□□□□ 0.48
SHMT2-215ENST00000554656 WDR7Q9Y4E6 1490 aa18.06■□□□□ 0.48
SHMT2-215ENST00000554656 KDM4FA0A1W2PPD8 638 aa18.04■□□□□ 0.48
SHMT2-215ENST00000554656 TEX14Q8IWB6 1497 aa18■□□□□ 0.47
SHMT2-215ENST00000554656 CFAP43Q8NDM7 1665 aa17.99■□□□□ 0.47
SHMT2-215ENST00000554656 SAMD9Q5K651 1589 aa17.99■□□□□ 0.47
SHMT2-215ENST00000554656 MAGI3Q5TCQ9 1506 aa17.93■□□□□ 0.46
SHMT2-215ENST00000554656 CSRNP3Q8WYN3 585 aa17.93■□□□□ 0.46
SHMT2-215ENST00000554656 ADGRL1O94910 1474 aa17.93■□□□□ 0.46
SHMT2-215ENST00000554656 CD109Q6YHK3 1445 aa17.91■□□□□ 0.46
SHMT2-215ENST00000554656 ATP10BO94823 1461 aa17.91■□□□□ 0.46
SHMT2-215ENST00000554656 P3H3Q8IVL6 736 aa17.91■□□□□ 0.46
SHMT2-215ENST00000554656 RAPGEF6Q8TEU7 1601 aa17.9■□□□□ 0.46
SHMT2-215ENST00000554656 EEA1Q15075 1411 aa17.89■□□□□ 0.45
SHMT2-215ENST00000554656 KCNH8Q96L42 1107 aa17.88■□□□□ 0.45
SHMT2-215ENST00000554656 ARID3CA6NKF2 412 aa17.87■□□□□ 0.45
SHMT2-215ENST00000554656 ABCA9Q8IUA7 1624 aa17.87■□□□□ 0.45
SHMT2-215ENST00000554656 KIF21BO75037 1637 aa17.83■□□□□ 0.45
SHMT2-215ENST00000554656 NUP153P49790 1475 aaKnown RBP17.83■□□□□ 0.45
SHMT2-215ENST00000554656 FHOD3Q2V2M9 1422 aa17.82■□□□□ 0.44
SHMT2-215ENST00000554656 ARAP3Q8WWN8 1544 aa17.8■□□□□ 0.44
SHMT2-215ENST00000554656 FAM9AQ8IZU1 332 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-215ENST00000554656 RANGAP1P46060 587 aaPredicted RBP17.76■□□□□ 0.43
SHMT2-215ENST00000554656 EFCAB5A4FU69 1503 aa17.76■□□□□ 0.43
SHMT2-215ENST00000554656 FRMPD1Q5SYB0 1578 aa17.74■□□□□ 0.43
SHMT2-215ENST00000554656 HECW2Q9P2P5 1572 aa17.71■□□□□ 0.43
SHMT2-215ENST00000554656 NEO1Q92859 1461 aa17.7■□□□□ 0.42
SHMT2-215ENST00000554656 TTC37Q6PGP7 1564 aa17.68■□□□□ 0.42
SHMT2-215ENST00000554656 CDK13Q14004 1512 aaKnown RBP17.67■□□□□ 0.42
SHMT2-215ENST00000554656 PHLDB1Q86UU1 1377 aa17.67■□□□□ 0.42
SHMT2-215ENST00000554656 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-215ENST00000554656 HNRNPUL2Q1KMD3 747 aaKnown RBP17.67■□□□□ 0.42
SHMT2-215ENST00000554656 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.67■□□□□ 0.42
SHMT2-215ENST00000554656 RICTORQ6R327 1708 aa17.67■□□□□ 0.42
SHMT2-215ENST00000554656 RAPGEF3O95398 923 aa17.65■□□□□ 0.42
SHMT2-215ENST00000554656 ADAMTSL3P82987 1691 aa17.64■□□□□ 0.42
SHMT2-215ENST00000554656 CHIC1Q5VXU3 224 aa17.63■□□□□ 0.41
SHMT2-215ENST00000554656 ARHGEF40Q8TER5 1519 aa17.62■□□□□ 0.41
SHMT2-215ENST00000554656 ARHGAP35Q9NRY4 1499 aa17.62■□□□□ 0.41
SHMT2-215ENST00000554656 CFAP74Q9C0B2 1584 aa17.62■□□□□ 0.41
SHMT2-215ENST00000554656 EHMT2Q96KQ7 1210 aa17.61■□□□□ 0.41
SHMT2-215ENST00000554656 BCORL1Q5H9F3 1711 aa17.61■□□□□ 0.41
SHMT2-215ENST00000554656 FANCAO15360 1455 aa17.6■□□□□ 0.41
SHMT2-215ENST00000554656 LRRIQ1Q96JM4 1722 aa17.59■□□□□ 0.41
SHMT2-215ENST00000554656 HECW1Q76N89 1606 aa17.59■□□□□ 0.41
SHMT2-215ENST00000554656 PLEKHD1A6NEE1 506 aa17.59■□□□□ 0.41
SHMT2-215ENST00000554656 AKNAQ7Z591 1439 aa17.58■□□□□ 0.41
SHMT2-215ENST00000554656 SIGLEC1Q9BZZ2 1709 aa17.58■□□□□ 0.4
SHMT2-215ENST00000554656 MADDQ8WXG6 1647 aa17.57■□□□□ 0.4
SHMT2-215ENST00000554656 ZMYM4Q5VZL5 1548 aa17.57■□□□□ 0.4
SHMT2-215ENST00000554656 DENND4BO75064 1496 aaPredicted RBP17.56■□□□□ 0.4
SHMT2-215ENST00000554656 UBTFP17480 764 aaKnown RBP17.55■□□□□ 0.4
SHMT2-215ENST00000554656 PTPRMP28827 1452 aa17.55■□□□□ 0.4
SHMT2-215ENST00000554656 FMN1Q68DA7 1419 aa17.55■□□□□ 0.4
SHMT2-215ENST00000554656 KIF14Q15058 1648 aa17.54■□□□□ 0.4
SHMT2-215ENST00000554656 MYO5CQ9NQX4 1742 aa17.53■□□□□ 0.4
SHMT2-215ENST00000554656 PLCH2O75038 1416 aa17.5■□□□□ 0.39
SHMT2-215ENST00000554656 YEATS2Q9ULM3 1422 aa17.5■□□□□ 0.39
SHMT2-215ENST00000554656 RIMS1Q86UR5 1692 aaKnown RBP17.5■□□□□ 0.39
SHMT2-215ENST00000554656 ZFYVE16Q7Z3T8 1539 aa17.5■□□□□ 0.39
SHMT2-215ENST00000554656 POGZQ7Z3K3 1410 aa17.48■□□□□ 0.39
SHMT2-215ENST00000554656 PCF11O94913 1555 aaKnown RBP17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms